12-32687371-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32687371
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32687370
    reference: chr 12
allele count: 1
allele frequency: 1.058873358746294e-4
allele num: 9444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.291-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.209-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.105-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-1089-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-245-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-340-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.167-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-245-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.11-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-245-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.35delT
  hgvsp: ENSP00000433666.1:p.Leu12TyrfsTer2
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-367-22432delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-245-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-245-29695delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.303+22533delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.179-29695delT
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu12TyrfsTer2
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: CT
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

12-32687404-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32687404
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32687404
    reference: chr 12
allele count: 1
allele frequency: 1.010509296685529e-4
allele num: 9896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-245-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-245-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.167-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-245-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.11-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.105-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.209-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-1089-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.63T>C
  hgvsp: ENST00000525053.1:c.63T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.303+22561T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.291-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-367-22404T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-245-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-340-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.179-29667T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-245-29667T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser21Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

12-32687461-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32687461
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32687460
    reference: chr 12
allele count: 1
allele frequency: 1.763668430335097e-4
allele num: 5670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-367-22340delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-245-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-245-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.167-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.209-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.91+36delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.11-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.105-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-1089-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-245-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-245-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.291-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-340-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-245-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.179-29603delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.303+22625delT
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: AT
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

12-32687468-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32687468
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32687467
    reference: chr 12
allele count: 1
allele frequency: 2.016129032258065e-4
allele num: 4960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-367-22339delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.291-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.91+37delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-245-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.105-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-340-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-245-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-245-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.303+22626delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-1089-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.11-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.167-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.209-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-245-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-245-29602delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.179-29602delC
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
reference allele: TC
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

12-32687478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32687478
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32687478
    reference: chr 12
allele count: 104
allele frequency: 2.561576354679803e-2
allele num: 4060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.105-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.11-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-245-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.167-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-367-22330C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-1089-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.91+46C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-245-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-245-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.179-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.209-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-340-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-245-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.291-29593C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.303+22635C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-245-29593C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 12
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-32717112-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32717112
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32717112
    reference: chr 12
allele count: 1
allele frequency: 8.161932745674175e-5
allele num: 12252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.52T>G
  hgvsp: ENSP00000431323.1:p.Ser18Ala
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-204T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.220T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.208T>G
  hgvsp: ENSP00000449273.1:p.Ser70Ala
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-1048T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-204T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-299T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.133T>G
  hgvsp: ENSP00000433666.1:p.Ser45Ala
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-204T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-204T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.345T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-204T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-204T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.146T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.250T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.332T>G
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser45Ala
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

12-32717222-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32717222
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32717222
    reference: chr 12
allele count: 1
allele frequency: 8.547008547008547e-5
allele num: 11700
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-94A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.243A>G
  hgvsp: ENST00000525053.1:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.162A>G
  hgvsp: ENST00000531134.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.318A>G
  hgvsp: ENST00000534526.2:c.318A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.360A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-189A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.256A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-94A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.442A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-94A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-94A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-94A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-938A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-94A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.330A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.455A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-94A>G
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/12-32717231-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32717231
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32717231
    reference: chr 12
allele count: 1
allele frequency: 8.700191404210893e-5
allele num: 11494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.244+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-93+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-188+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-93+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.443+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-937+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.361+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.319+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-93+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-93+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.257+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-93+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-93+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.456+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.331+8C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.163+8C>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-93+8C>A
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

12-32717259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32717259
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32717259
    reference: chr 12
allele count: 2
allele frequency: 1.86811133943583e-4
allele num: 10706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-937+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.443+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.244+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-93+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.456+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-188+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.319+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-93+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.257+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.331+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.361+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-93+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-93+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.163+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-93+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-93+36C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

12-32729155-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729155
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729155
    reference: chr 12
allele count: 1
allele frequency: 5.50478916657492e-5
allele num: 18166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-92-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-936-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5739G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.245-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.332-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-92-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5739G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-92-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-92-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.457-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.320-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-92-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.164-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5739G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-92-45G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.505-45G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

12-32729155-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729155
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729156
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 18166
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-92-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-92-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-92-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5737dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-936-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.505-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-92-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.245-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5737dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.164-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.320-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.332-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5737dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-92-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.457-43dupA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-92-43dupA
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

12-32729160-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729160
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729160
    reference: chr 12
allele count: 1
allele frequency: 5.463286713286713e-5
allele num: 18304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-92-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.164-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5734A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-936-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.332-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-92-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.505-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.245-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.320-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5734A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-92-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-92-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-92-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5734A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-92-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.457-40A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

12-32729173-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729173
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729173
    reference: chr 12
allele count: 1
allele frequency: 5.227938101212881e-5
allele num: 19128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5721A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-92-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.332-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-92-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5721A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-92-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-92-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-92-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5721A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.457-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-92-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.245-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-936-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.164-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.505-27A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.320-27A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum

12-32729178-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729178
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729178
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 19854
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-92-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.245-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.332-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-92-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-92-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.164-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-92-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5716A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-92-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.457-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-936-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-92-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5716A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.320-22A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5716A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.505-22A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28482
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19445
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

12-32729189-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729189
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729189
    reference: chr 12
allele count: 1
allele frequency: 4.294794708812919e-5
allele num: 23284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.505-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.245-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.164-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5705T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-92-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5705T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-92-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.457-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-92-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-92-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-936-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5705T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-92-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.332-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-92-11T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.320-11T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

12-32729221-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729221
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729221
    reference: chr 12
allele count: 1
allele frequency: 1.679656006449879e-5
allele num: 59536
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.478T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-71T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.526T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-71T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-71T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-71T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.266T>C
  hgvsp: ENSP00000433666.1:p.Leu89Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.353T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-71T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.185T>C
  hgvsp: ENSP00000431323.1:p.Leu62Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5673T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5673T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-71T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.341T>C
  hgvsp: ENSP00000449273.1:p.Leu114Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5673T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-915T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16425
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu62Pro
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-32729224-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729224
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729224
    reference: chr 12
allele count: 1
allele frequency: 1.557438325442313e-5
allele num: 64208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-68A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.188A>T
  hgvsp: ENSP00000431323.1:p.Gln63Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-68A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5670A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-68A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-912A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.344A>T
  hgvsp: ENSP00000449273.1:p.Gln115Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-68A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.269A>T
  hgvsp: ENSP00000433666.1:p.Gln90Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-68A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.481A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-68A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.529A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5670A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5670A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.356A>T
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26702
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln63Leu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

12-32729232-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729232
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729232
    reference: chr 12
allele count: 2
allele frequency: 2.682979180081563e-5
allele num: 74544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-60C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-60C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5662C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-60C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-60C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.364C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000497153
  gene symbol: FGD4
  hgvsc: ENST00000497153.1:n.537C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5662C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.489C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.277C>T
  hgvsp: ENSP00000433666.1:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.352C>T
  hgvsp: ENSP00000449273.1:p.Pro118Ser
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-60C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.196C>T
  hgvsp: ENSP00000431323.1:p.Pro66Ser
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5662C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-60C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-904C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22721
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro66Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

12-32729236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729236
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729236
    reference: chr 12
allele count: 2
allele frequency: 2.485336514564072e-5
allele num: 80472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5658C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5658C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.356C>T
  hgvsp: ENSP00000449273.1:p.Ser119Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.281C>T
  hgvsp: ENSP00000433666.1:p.Ser94Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-900C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.200C>T
  hgvsp: ENSP00000431323.1:p.Ser67Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5658C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.493C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-56C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.368C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser67Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

12-32729237-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729237
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729237
    reference: chr 12
allele count: 2
allele frequency: 2.384472316276408e-5
allele num: 83876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-55G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-899G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-55G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-55G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-55G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.201G>A
  hgvsp: ENST00000531134.1:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.494G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-55G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5657G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.282G>A
  hgvsp: ENST00000525053.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.369G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.357G>A
  hgvsp: ENST00000534526.2:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-55G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5657G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5657G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser67Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

12-32729240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729240
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729240
    reference: chr 12
allele count: 1
allele frequency: 1.114081996434938e-5
allele num: 89760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.204C>T
  hgvsp: ENST00000531134.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-52C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5654C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-896C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-52C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5654C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-52C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.360C>T
  hgvsp: ENST00000534526.2:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-52C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.497C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.285C>T
  hgvsp: ENST00000525053.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-52C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.372C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5654C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-52C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29769
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser68Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-32729246-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729246
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729246
    reference: chr 12
allele count: 1
allele frequency: 1.013746401200276e-5
allele num: 98644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.366A>G
  hgvsp: ENSP00000449273.1:p.Ile122Met
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-46A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-46A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.503A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-46A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-890A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5648A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.291A>G
  hgvsp: ENSP00000433666.1:p.Ile97Met
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5648A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-46A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-46A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-46A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.210A>G
  hgvsp: ENSP00000431323.1:p.Ile70Met
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5648A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.378A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile70Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

12-32729252-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729252
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729252
    reference: chr 12
allele count: 1
allele frequency: 9.458411365227096e-6
allele num: 105726
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.384A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.297A>G
  hgvsp: ENST00000525053.1:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-884A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.372A>G
  hgvsp: ENST00000534526.2:c.372A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5642A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5642A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5642A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.216A>G
  hgvsp: ENST00000531134.1:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-40A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.509A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-40A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln72Gln
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/12-32729253-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729253
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729253
    reference: chr 12
allele count: 1
allele frequency: 9.395140833161089e-6
allele num: 106438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-39A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.373A>C
  hgvsp: ENSP00000449273.1:p.Thr125Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.298A>C
  hgvsp: ENSP00000433666.1:p.Thr100Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-39A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5641A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5641A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.510A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.385A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.217A>C
  hgvsp: ENSP00000431323.1:p.Thr73Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-39A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-39A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5641A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-39A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-883A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-39A>C
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr73Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-32729256-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729256
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729256
    reference: chr 12
allele count: 26
allele frequency: 2.373085558861649e-4
allele num: 109562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.220C>A
  hgvsp: ENSP00000431323.1:p.Pro74Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-36C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-36C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.376C>A
  hgvsp: ENSP00000449273.1:p.Pro126Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5638C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5638C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.301C>A
  hgvsp: ENSP00000433666.1:p.Pro101Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-880C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-36C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-36C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-36C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-36C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.388C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.513C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5638C>A
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7433
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro74Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/12-32729273-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729273
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729273
    reference: chr 12
allele count: 1
allele frequency: 8.505137102810097e-6
allele num: 117576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.393A>C
  hgvsp: ENSP00000449273.1:p.Leu131Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-19A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-19A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-19A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.318A>C
  hgvsp: ENSP00000433666.1:p.Leu106Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.405A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-19A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5621A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.237A>C
  hgvsp: ENSP00000431323.1:p.Leu79Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5621A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-19A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-19A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000479023
  gene symbol: FGD4
  hgvsc: ENST00000479023.1:n.530A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-863A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5621A>C
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu79Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

12-32729279-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729279
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729279
    reference: chr 12
allele count: 1
allele frequency: 8.407317729351627e-6
allele num: 118944
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.411T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-857T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-13T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-13T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-13T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.399T>C
  hgvsp: ENST00000534526.2:c.399T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5615T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.243T>C
  hgvsp: ENST00000531134.1:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.324T>C
  hgvsp: ENST00000525053.1:c.324T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-13T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-13T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5615T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-13T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5615T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9743
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser108Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

12-32729280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729280
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729280
    reference: chr 12
allele count: 1
allele frequency: 8.397574780403419e-6
allele num: 119082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.325G>A
  hgvsp: ENSP00000433666.1:p.Ala109Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-12G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5614G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5614G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.412G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.400G>A
  hgvsp: ENSP00000449273.1:p.Ala134Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.244G>A
  hgvsp: ENSP00000431323.1:p.Ala82Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-856G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5614G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9803
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala109Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

12-32729281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729281
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729281
    reference: chr 12
allele count: 1
allele frequency: 8.388558006878617e-6
allele num: 119210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-11C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.413C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5613C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.245C>T
  hgvsp: ENSP00000431323.1:p.Ala82Val
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-855C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.326C>T
  hgvsp: ENSP00000433666.1:p.Ala109Val
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.401C>T
  hgvsp: ENSP00000449273.1:p.Ala134Val
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5613C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5613C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41431
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala109Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

12-32729285-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729285
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729285
    reference: chr 12
allele count: 1
allele frequency: 8.347106058329577e-6
allele num: 119802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.405A>G
  hgvsp: ENST00000534526.2:c.405A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-851A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5609A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-7A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.417A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-7A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-7A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5609A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.330A>G
  hgvsp: ENST00000525053.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5609A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.249A>G
  hgvsp: ENST00000531134.1:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-7A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-7A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-7A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys110Lys
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

12-32729287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729287
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729287
    reference: chr 12
allele count: 4
allele frequency: 3.331889514543698e-5
allele num: 120052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.407C>T
  hgvsp: ENSP00000449273.1:p.Pro136Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.251C>T
  hgvsp: ENSP00000431323.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5607C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.-5C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.332C>T
  hgvsp: ENSP00000433666.1:p.Pro111Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.-5C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.-5C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-849C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.419C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.-5C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5607C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.-5C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.-5C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5607C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro111Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-32729293-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729293
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729293
    reference: chr 12
allele count: 1
allele frequency: 8.297102651754007e-6
allele num: 120524
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.413T>G
  hgvsp: ENSP00000449273.1:p.Met138Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.2T>G
  hgvsp: ENSP00000379089.1:p.Met1?
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5601T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5601T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.257T>G
  hgvsp: ENSP00000431323.1:p.Met86Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.2T>G
  hgvsp: ENSP00000449614.1:p.Met1?
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.2T>G
  hgvsp: ENSP00000434356.1:p.Met1?
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.338T>G
  hgvsp: ENSP00000433666.1:p.Met113Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.2T>G
  hgvsp: ENSP00000394487.2:p.Met1?
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.2T>G
  hgvsp: ENSP00000437109.1:p.Met1?
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.2T>G
  hgvsp: ENSP00000462623.1:p.Met1?
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-843T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5601T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.425T>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: start lost
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10290
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

12-32729298-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729298
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729298
    reference: chr 12
allele count: 2
allele frequency: 1.656232402530723e-5
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5596G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.7G>A
  hgvsp: ENSP00000379089.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.7G>A
  hgvsp: ENSP00000394487.2:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.7G>A
  hgvsp: ENSP00000449614.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.7G>A
  hgvsp: ENSP00000462623.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5596G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.7G>A
  hgvsp: ENSP00000437109.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.7G>A
  hgvsp: ENSP00000434356.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-838G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.262G>A
  hgvsp: ENSP00000431323.1:p.Glu88Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5596G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.430G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.418G>A
  hgvsp: ENSP00000449273.1:p.Glu140Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.343G>A
  hgvsp: ENSP00000433666.1:p.Glu115Lys
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu3Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

12-32729302-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729302
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729302
    reference: chr 12
allele count: 1
allele frequency: 8.274583788435442e-6
allele num: 120852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5592T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-834T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.347T>C
  hgvsp: ENSP00000433666.1:p.Ile116Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.11T>C
  hgvsp: ENSP00000437109.1:p.Ile4Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.11T>C
  hgvsp: ENSP00000449614.1:p.Ile4Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.11T>C
  hgvsp: ENSP00000379089.1:p.Ile4Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5592T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.11T>C
  hgvsp: ENSP00000462623.1:p.Ile4Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.11T>C
  hgvsp: ENSP00000434356.1:p.Ile4Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.11T>C
  hgvsp: ENSP00000394487.2:p.Ile4Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.266T>C
  hgvsp: ENSP00000431323.1:p.Ile89Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.422T>C
  hgvsp: ENSP00000449273.1:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5592T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.434T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile4Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/12-32729306-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729306
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729306
    reference: chr 12
allele count: 84
allele frequency: 7.017895633866359e-4
allele num: 119694
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5588A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.15A>C
  hgvsp: ENSP00000449614.1:p.Lys5Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.15A>C
  hgvsp: ENSP00000462623.1:p.Lys5Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.15A>C
  hgvsp: ENSP00000437109.1:p.Lys5Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.270A>C
  hgvsp: ENSP00000431323.1:p.Lys90Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.15A>C
  hgvsp: ENSP00000379089.1:p.Lys5Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5588A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.438A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-830A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.351A>C
  hgvsp: ENSP00000433666.1:p.Lys117Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.15A>C
  hgvsp: ENSP00000394487.2:p.Lys5Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5588A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.15A>C
  hgvsp: ENSP00000434356.1:p.Lys5Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.426A>C
  hgvsp: ENSP00000449273.1:p.Lys142Asn
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 40718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
hgvs: p.Lys5Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

12-32729307-CCTGCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729307
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729301
    reference: chr 12
allele count: 1
allele frequency: 8.274036074797286e-6
allele num: 120860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.357_362delCTCTGC
  hgvsp: ENSP00000433666.1:p.Ala121_Ser122del
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.21_26delCTCTGC
  hgvsp: ENSP00000462623.1:p.Ala9_Ser10del
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.21_26delCTCTGC
  hgvsp: ENSP00000449614.1:p.Ala9_Ser10del
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.432_437delCTCTGC
  hgvsp: ENSP00000449273.1:p.Ala146_Ser147del
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.444_449delCTCTGC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.21_26delCTCTGC
  hgvsp: ENSP00000434356.1:p.Ala9_Ser10del
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.276_281delCTCTGC
  hgvsp: ENSP00000431323.1:p.Ala94_Ser95del
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-824_-819delCTCTGC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.21_26delCTCTGC
  hgvsp: ENSP00000394487.2:p.Ala9_Ser10del
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.21_26delCTCTGC
  hgvsp: ENSP00000437109.1:p.Ala9_Ser10del
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.21_26delCTCTGC
  hgvsp: ENSP00000379089.1:p.Ala9_Ser10del
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala9_Ser10del
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: CCTGCCT
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

12-32729310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729310
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729310
    reference: chr 12
allele count: 2
allele frequency: 1.652564780539397e-5
allele num: 121024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.19G>A
  hgvsp: ENSP00000462623.1:p.Ala7Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.19G>A
  hgvsp: ENSP00000379089.1:p.Ala7Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.19G>A
  hgvsp: ENSP00000434356.1:p.Ala7Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5584G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.430G>A
  hgvsp: ENSP00000449273.1:p.Ala144Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.19G>A
  hgvsp: ENSP00000437109.1:p.Ala7Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5584G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.19G>A
  hgvsp: ENSP00000394487.2:p.Ala7Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.19G>A
  hgvsp: ENSP00000449614.1:p.Ala7Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5584G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.274G>A
  hgvsp: ENSP00000431323.1:p.Ala92Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.442G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.355G>A
  hgvsp: ENSP00000433666.1:p.Ala119Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-826G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala7Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

12-32729313-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729313
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729313
    reference: chr 12
allele count: 2
allele frequency: 1.65180046250413e-5
allele num: 121080
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.22T>C
  hgvsp: ENSP00000449614.1:p.Ser8Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.22T>C
  hgvsp: ENSP00000437109.1:p.Ser8Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.22T>C
  hgvsp: ENSP00000394487.2:p.Ser8Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.277T>C
  hgvsp: ENSP00000431323.1:p.Ser93Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.358T>C
  hgvsp: ENSP00000433666.1:p.Ser120Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.22T>C
  hgvsp: ENSP00000462623.1:p.Ser8Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.22T>C
  hgvsp: ENSP00000379089.1:p.Ser8Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5581T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.22T>C
  hgvsp: ENSP00000434356.1:p.Ser8Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5581T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.445T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.433T>C
  hgvsp: ENSP00000449273.1:p.Ser145Pro
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5581T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-823T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser8Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-32729320-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729320
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729320
    reference: chr 12
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5574C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.452C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.29C>G
  hgvsp: ENSP00000379089.1:p.Ser10Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.440C>G
  hgvsp: ENSP00000449273.1:p.Ser147Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.365C>G
  hgvsp: ENSP00000433666.1:p.Ser122Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.29C>G
  hgvsp: ENSP00000437109.1:p.Ser10Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.29C>G
  hgvsp: ENSP00000462623.1:p.Ser10Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-816C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.284C>G
  hgvsp: ENSP00000431323.1:p.Ser95Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.29C>G
  hgvsp: ENSP00000449614.1:p.Ser10Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.29C>G
  hgvsp: ENSP00000434356.1:p.Ser10Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5574C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.29C>G
  hgvsp: ENSP00000394487.2:p.Ser10Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5574C>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser10Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-32729341-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729341
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729341
    reference: chr 12
allele count: 16
allele frequency: 1.319718240155727e-4
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.50C>G
  hgvsp: ENSP00000434356.1:p.Pro17Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.473C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.50C>G
  hgvsp: ENSP00000394487.2:p.Pro17Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.305C>G
  hgvsp: ENSP00000431323.1:p.Pro102Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5553C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5553C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.50C>G
  hgvsp: ENSP00000379089.1:p.Pro17Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.50C>G
  hgvsp: ENSP00000437109.1:p.Pro17Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.461C>G
  hgvsp: ENSP00000449273.1:p.Pro154Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-795C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.50C>G
  hgvsp: ENSP00000449614.1:p.Pro17Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.386C>G
  hgvsp: ENSP00000433666.1:p.Pro129Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.50C>G
  hgvsp: ENSP00000462623.1:p.Pro17Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5553C>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro17Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

12-32729349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729349
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729349
    reference: chr 12
allele count: 9
allele frequency: 7.422068283028204e-5
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.481G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.58G>A
  hgvsp: ENSP00000449614.1:p.Val20Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.313G>A
  hgvsp: ENSP00000431323.1:p.Val105Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.469G>A
  hgvsp: ENSP00000449273.1:p.Val157Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.58G>A
  hgvsp: ENSP00000437109.1:p.Val20Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5545G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.58G>A
  hgvsp: ENSP00000394487.2:p.Val20Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.58G>A
  hgvsp: ENSP00000434356.1:p.Val20Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.394G>A
  hgvsp: ENSP00000433666.1:p.Val132Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-787G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.58G>A
  hgvsp: ENSP00000462623.1:p.Val20Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5545G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.58G>A
  hgvsp: ENSP00000379089.1:p.Val20Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5545G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val20Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/12-32729358-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729358
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729358
    reference: chr 12
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.322C>A
  hgvsp: ENSP00000431323.1:p.Leu108Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.67C>A
  hgvsp: ENSP00000434356.1:p.Leu23Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.67C>A
  hgvsp: ENSP00000462623.1:p.Leu23Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.478C>A
  hgvsp: ENSP00000449273.1:p.Leu160Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.67C>A
  hgvsp: ENSP00000449614.1:p.Leu23Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5536C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.67C>A
  hgvsp: ENSP00000437109.1:p.Leu23Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.403C>A
  hgvsp: ENSP00000433666.1:p.Leu135Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5536C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.490C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5536C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.67C>A
  hgvsp: ENSP00000379089.1:p.Leu23Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.67C>A
  hgvsp: ENSP00000394487.2:p.Leu23Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-778C>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu23Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-32729358-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729358
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729358
    reference: chr 12
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.67C>T
  hgvsp: ENSP00000434356.1:p.Leu23Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.67C>T
  hgvsp: ENSP00000462623.1:p.Leu23Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5536C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.67C>T
  hgvsp: ENSP00000449614.1:p.Leu23Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.67C>T
  hgvsp: ENSP00000437109.1:p.Leu23Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.67C>T
  hgvsp: ENSP00000379089.1:p.Leu23Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.67C>T
  hgvsp: ENSP00000394487.2:p.Leu23Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.490C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.478C>T
  hgvsp: ENSP00000449273.1:p.Leu160Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-778C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.322C>T
  hgvsp: ENSP00000431323.1:p.Leu108Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.403C>T
  hgvsp: ENSP00000433666.1:p.Leu135Phe
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5536C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5536C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40566
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu23Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

12-32729367-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729367
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729367
    reference: chr 12
allele count: 4
allele frequency: 3.298588204248581e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5527C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.76C>T
  hgvsp: ENSP00000462623.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.76C>T
  hgvsp: ENSP00000394487.2:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.487C>T
  hgvsp: ENSP00000449273.1:p.Arg163Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.499C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.76C>T
  hgvsp: ENSP00000379089.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-769C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.331C>T
  hgvsp: ENSP00000431323.1:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.76C>T
  hgvsp: ENSP00000449614.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.76C>T
  hgvsp: ENSP00000434356.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5527C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.76C>T
  hgvsp: ENSP00000437109.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.412C>T
  hgvsp: ENSP00000433666.1:p.Arg138Cys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5527C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg26Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

12-32729368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729368
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729368
    reference: chr 12
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.413G>A
  hgvsp: ENSP00000433666.1:p.Arg138His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.488G>A
  hgvsp: ENSP00000449273.1:p.Arg163His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-768G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.500G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.77G>A
  hgvsp: ENSP00000379089.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.77G>A
  hgvsp: ENSP00000462623.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5526G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.77G>A
  hgvsp: ENSP00000434356.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.332G>A
  hgvsp: ENSP00000431323.1:p.Arg111His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.77G>A
  hgvsp: ENSP00000437109.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5526G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.77G>A
  hgvsp: ENSP00000449614.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5526G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.77G>A
  hgvsp: ENSP00000394487.2:p.Arg26His
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg26His
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

12-32729368-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729368
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729368
    reference: chr 12
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5526G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.500G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5526G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.77G>T
  hgvsp: ENSP00000449614.1:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.77G>T
  hgvsp: ENSP00000437109.1:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.488G>T
  hgvsp: ENSP00000449273.1:p.Arg163Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5526G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000462623
  ensembl transcript: ENST00000583694
  gene symbol: FGD4
  hgvsc: ENST00000583694.1:c.77G>T
  hgvsp: ENSP00000462623.1:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.413G>T
  hgvsp: ENSP00000433666.1:p.Arg138Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.77G>T
  hgvsp: ENSP00000394487.2:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.77G>T
  hgvsp: ENSP00000434356.1:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.77G>T
  hgvsp: ENSP00000379089.1:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-768G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.332G>T
  hgvsp: ENSP00000431323.1:p.Arg111Leu
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg26Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

12-32729401-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729401
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729401
    reference: chr 12
allele count: 1
allele frequency: 8.274583788435442e-6
allele num: 120852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5493A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+18A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.515+18A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-753+18A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.92+18A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5493A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5493A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.428+18A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.503+18A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.92+18A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.92+18A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.347+18A>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.92+18A>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

12-32729402-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729402
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729402
    reference: chr 12
allele count: 1
allele frequency: 8.275816409288777e-6
allele num: 120834
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.428+19T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.92+19T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.503+19T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.347+19T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5492T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-753+19T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5492T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.92+19T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5492T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.92+19T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.92+19T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+19T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.515+19T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

12-32729415-GAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729415
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729412
    reference: chr 12
allele count: 1
allele frequency: 8.305371914554334e-6
allele num: 120404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-753+40_-753+42delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.92+40_92+42delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.92+40_92+42delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.347+40_347+42delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5471_444-5469delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.503+40_503+42delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5471_258-5469delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.515+40_515+42delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.92+40_92+42delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.92+40_92+42delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.428+40_428+42delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+40_92+42delGAA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5471_-187-5469delGAA
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: GAGA
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-32729420-G-GGAGAAGGCAGGAGAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729420
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729436
    reference: chr 12
allele count: 1
allele frequency: 8.327088017320342e-6
allele num: 120090
alternate allele: GGAGAAGGCAGGAGAAA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 9217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

12-32729425-A-ATAGAATAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729425
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729433
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 119792
alternate allele: ATAGAATAT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8546
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

12-32729428-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729428
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729428
    reference: chr 12
allele count: 7
allele frequency: 5.876229810953293e-5
allele num: 119124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.92+45C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.503+45C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5466C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5466C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+45C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.92+45C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.428+45C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.92+45C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.347+45C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-753+45C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.92+45C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5466C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.515+45C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29987
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

12-32729430-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729430
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729430
    reference: chr 12
allele count: 2
allele frequency: 1.687194196051966e-5
allele num: 118540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.92+47G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5464G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5464G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5464G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.92+47G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.428+47G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.503+47G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.515+47G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.347+47G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+47G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.92+47G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-753+47G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.92+47G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8384
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9184
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

12-32729432-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32729432
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32729432
    reference: chr 12
allele count: 1
allele frequency: 8.461525443807009e-6
allele num: 118182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.428+49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-5462T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-5462T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.92+49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.92+49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000473513
  gene symbol: FGD4
  hgvsc: ENST00000473513.1:n.515+49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-753+49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.92+49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-5462T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.503+49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.92+49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.347+49T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 29240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9163
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/12-32734816-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32734816
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32734816
    reference: chr 12
allele count: 1
allele frequency: 9.045517041754106e-6
allele num: 110552
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-752-78A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.429-78A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.93-78A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+5433A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.93-78A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.93-78A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.348-78A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-78A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.504-78A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-78A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-78A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.93-78A>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-32734823-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32734823
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32734823
    reference: chr 12
allele count: 2
allele frequency: 1.799953201216768e-5
allele num: 111114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.348-71A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.93-71A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.429-71A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.504-71A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.93-71A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.93-71A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+5440A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-71A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.93-71A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-71A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-752-71A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-71A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26157
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

12-32734824-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32734824
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32734824
    reference: chr 12
allele count: 1
allele frequency: 8.997822526948479e-6
allele num: 111138
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-70T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.93-70T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.429-70T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.504-70T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.93-70T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.93-70T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-752-70T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-70T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+5441T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-70T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.93-70T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.348-70T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

12-32734827-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32734827
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32734827
    reference: chr 12
allele count: 1
allele frequency: 8.972955512086571e-6
allele num: 111446
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.93-67A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.93-67A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-67A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-752-67A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+5444A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.93-67A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.348-67A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-67A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.93-67A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.429-67A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-67A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.504-67A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

12-32734830-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32734830
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32734830
    reference: chr 12
allele count: 1
allele frequency: 8.936231055190164e-6
allele num: 111904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.429-64T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-64T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.93-64T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-64T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.504-64T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.348-64T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.93-64T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-64T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+5447T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.93-64T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-752-64T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.93-64T>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30663
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

12-32734831-G-GTCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32734831
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32734834
    reference: chr 12
allele count: 2
allele frequency: 1.78491744756805e-5
allele num: 112050
alternate allele: GTCT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.93-61_93-59dupCTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.93-61_93-59dupCTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.93-61_93-59dupCTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-61_-187-59dupCTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-752-61_-752-59dupCTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.429-61_429-59dupCTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+5450_92+5452dupCTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-61_444-59dupCTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-61_258-59dupCTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.348-61_348-59dupCTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.504-61_504-59dupCTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.93-61_93-59dupCTT
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9739
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

12-32734834-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32734834
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32734834
    reference: chr 12
allele count: 2
allele frequency: 1.775851964980199e-5
allele num: 112622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.504-60T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.93-60T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.93-60T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+5451T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.348-60T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-60T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.93-60T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.93-60T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-60T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.429-60T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-60T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-752-60T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-32734855-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32734855
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32734855
    reference: chr 12
allele count: 1
allele frequency: 8.507597284374947e-6
allele num: 117542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.429-39A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.93-39A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.504-39A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-39A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.93-39A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-752-39A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.93-39A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-39A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+5472A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.348-39A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-39A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.93-39A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

12-32734860-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32734860
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32734860
    reference: chr 12
allele count: 2
allele frequency: 1.68767826101632e-5
allele num: 118506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+5477T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.93-34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.348-34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.93-34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-752-34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.504-34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.93-34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.429-34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.93-34T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

12-32734866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32734866
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32734866
    reference: chr 12
allele count: 7
allele frequency: 5.874158736552372e-5
allele num: 119166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-28C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+5483C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.93-28C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-752-28C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-28C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.93-28C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.348-28C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.93-28C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.429-28C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-28C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.93-28C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.504-28C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/12-32734867-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32734867
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32734867
    reference: chr 12
allele count: 1
allele frequency: 8.381246123673667e-6
allele num: 119314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.-187-27A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000550091
  gene symbol: FGD4
  hgvsc: ENST00000550091.1:n.258-27A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.504-27A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.429-27A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434356
  ensembl transcript: ENST00000472289
  gene symbol: FGD4
  hgvsc: ENST00000472289.1:c.93-27A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.-752-27A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.93-27A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.348-27A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.93-27A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.92+5484A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.93-27A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl transcript: ENST00000494275
  gene symbol: FGD4
  hgvsc: ENST00000494275.1:n.444-27A>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: A

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1328
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 146
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 573
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3521
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1175
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.953125e-3
allele num: 512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.482e0

VQSLOD
type: SiteQuality
SIO_000300: -1.316e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.119e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.264e0

QD
type: SiteQuality
SIO_000300: 4.58e0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-1

DP
type: SiteQuality
SIO_000300: 1.18447e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

GenotypeDepth
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 724
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3407
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.37609723160027e-4
allele num: 2962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

QD
type: SiteQuality
SIO_000300: 5.02e0

VQSLOD
type: SiteQuality
SIO_000300: -2.554e0

MQRankSum
type: SiteQuality
SIO_000300: -1.399e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.22108e5

GenotypeDepth
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 372
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2359
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1888
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 218
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.441156228492773e-4
allele num: 2906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

DP
type: SiteQuality
SIO_000300: 7.113e4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.91e0

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.65e-2

GenotypeDepth
all individuals: 2599
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2626
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.617977528089888e-4
allele num: 1780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 6.7827e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.83e-2

MQ
type: SiteQuality
SIO_000300: 6.102e1

MQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

QD
type: SiteQuality
SIO_000300: 9.08e0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 6

GenotypeDepth
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variant carriers: 6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 8

GenotypeDepth
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GenotypeDepth
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variant carriers: 6

GenotypeDepth
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 9.75e1
variant carriers: 91

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.195786864931846e-4
allele num: 1614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 5.847953216374269e-4
allele num: 1710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 99
allele frequency: 2.28110599078341e-1
allele num: 434
num of homozygotes: 12

Latino
type: Population
allele count: 2
allele frequency: 1.724137931034483e-2
allele num: 116
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.380952380952381e-2
allele num: 42
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
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SIO_000300: 6.8584e4

FS
type: SiteQuality
SIO_000300: 1.174e0

QD
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SIO_000300: 1.396e1

BaseQRankSum
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SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

VQSLOD
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SIO_000300: 4.71e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.314751511964239e-4
allele num: 7606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.50313e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.57e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
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SIO_000300: -9.684e-1

BaseQRankSum
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SIO_000300: -4.6e-2

FS
type: SiteQuality
SIO_000300: 1.378e0

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

QD
type: SiteQuality
SIO_000300: 1.226e1

MQ
type: SiteQuality
SIO_000300: 5.899e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.946375957572186e-4
allele num: 3394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.77e-1

ReadPosRankSum
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SIO_000300: 1.96e0

MQRankSum
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SIO_000300: 3.58e-1

BaseQRankSum
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SIO_000300: 1.23e0

InbreedingCoeff
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SIO_000300: -3.58e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.802e0

QD
type: SiteQuality
SIO_000300: 1.061e1

ClippingRankSum
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SIO_000300: -1.231e0

DP
type: SiteQuality
SIO_000300: 1.35895e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.40964195094446e-4
allele num: 7094
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3336
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 200
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.29726e5

InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 258
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
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African
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allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.377551020408163e-4
allele num: 3136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.92e-2

MQRankSum
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SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

VQSLOD
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SIO_000300: -8.447e-1

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.04425e5

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 2.336448598130841e-3
allele num: 428
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

FS
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DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 5.22e-2

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 1.07e0

MQRankSum
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SIO_000300: 5.5e-1

BaseQRankSum
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SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

QD
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SIO_000300: 1.203e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7374
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.203e1

DP
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SIO_000300: 4.21526e5

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 3.302e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.22e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.340482573726542e-4
allele num: 7460
num of homozygotes: 0

MQRankSum
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SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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DP
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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QD
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SIO_000300: 1.253e1

BaseQRankSum
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SIO_000300: 1.92e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.256597134958532e-4
allele num: 7958
num of homozygotes: 0

East Asian
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Other
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European (Finnish)
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South Asian
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Latino
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African
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allele frequency: 0.0e0
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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East Asian
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FS
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InbreedingCoeff
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MQ
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QD
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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East Asian
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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FS
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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South Asian
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Latino
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Other
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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East Asian
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QD
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MQRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.031037827352085e-5
allele num: 32992
num of homozygotes: 0

South Asian
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FS
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VQSLOD
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DP
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QD
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ClippingRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 39106
num of homozygotes: 0

Latino
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East Asian
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African
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VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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Latino
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East Asian
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Other
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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African
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European (Non-Finnish)
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Other
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South Asian
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BaseQRankSum
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QD
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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num of homozygotes: 0

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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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DP
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.863585538576221e-5
allele num: 53660
num of homozygotes: 0

Other
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ClippingRankSum
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ReadPosRankSum
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QD
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FS
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MQ
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.72271223814774e-5
allele num: 58048
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 5876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.320632e6

ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.938e1

ClippingRankSum
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SIO_000300: -1.716e0

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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Other
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allele frequency: 1.240694789081886e-3
allele num: 806
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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DP
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 60346
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African
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South Asian
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Latino
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East Asian
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Other
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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Other
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East Asian
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European (Non-Finnish)
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European (Finnish)
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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Other
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East Asian
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African
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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MQ
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DP
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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MQ
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InbreedingCoeff
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FS
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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East Asian
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MQ
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FS
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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FS
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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BaseQRankSum
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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European (Finnish)
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South Asian
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DP
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MQ
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ClippingRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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African
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

VQSLOD
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SIO_000300: 5.95e-1

ReadPosRankSum
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MQ
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SIO_000300: 5.943e1

QD
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SIO_000300: 1.52e1

FS
type: SiteQuality
SIO_000300: 1.545e0

MQRankSum
type: SiteQuality
SIO_000300: 5.34e-1

BaseQRankSum
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SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.481502e6

GenotypeDepth
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variant carriers: 8

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 8

East Asian
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allele count: 2
allele frequency: 2.332089552238806e-4
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.856726566294317e-4
allele num: 65888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.869158878504673e-3
allele num: 6420
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.613240418118467e-4
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.089392278650591e-5
allele num: 16422
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 3.192975454001198e-3
allele num: 10022
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.257336343115124e-3
allele num: 886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.89526e2

DP
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SIO_000300: 1.540571e6

BaseQRankSum
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SIO_000300: -5.191e0

MQ
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SIO_000300: 5.964e1

VQSLOD
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SIO_000300: -3.895e2

InbreedingCoeff
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SIO_000300: -4.6e-3

ReadPosRankSum
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SIO_000300: -2.589e0

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

QD
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SIO_000300: 4.6e-1

ClippingRankSum
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SIO_000300: 3.62e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.088650754992694e-5
allele num: 16424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.25e0

ReadPosRankSum
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SIO_000300: 4.47e-1

QD
type: SiteQuality
SIO_000300: 5.4e0

MQRankSum
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SIO_000300: -3.886e0

BaseQRankSum
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SIO_000300: 6.24e-1

DP
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SIO_000300: 1.516981e6

ClippingRankSum
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SIO_000300: -9.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.233e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002462018855461e-5
allele num: 66612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -3.36e0

MQ
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MQRankSum
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QD
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 4.395e0

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 5.46e-2

DP
type: SiteQuality
SIO_000300: 1.515218e6

VQSLOD
type: SiteQuality
SIO_000300: -2.523e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
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FS
type: SiteQuality
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QD
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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FS
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QD
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MQ
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BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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European (Non-Finnish)
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allele frequency: 2.24948261899763e-4
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East Asian
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African
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South Asian
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ClippingRankSum
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MQRankSum
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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Other
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European (Finnish)
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Latino
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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African
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East Asian
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Latino
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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BaseQRankSum
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MQRankSum
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DP
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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Other
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European (Finnish)
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ClippingRankSum
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FS
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QD
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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South Asian
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DP
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QD
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Non-Finnish)
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

FS
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SIO_000300: 5.94e-1

InbreedingCoeff
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QD
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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Latino
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African
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Other
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European (Non-Finnish)
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allele frequency: 1.504438092372499e-5
allele num: 66470
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
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African
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num of homozygotes: 0

Latino
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allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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QD
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele count: 1
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allele num: 10280
num of homozygotes: 0

European (Finnish)
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allele count: 0
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MQRankSum
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DP
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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FS
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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South Asian
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allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

African
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allele frequency: 9.761811792268645e-5
allele num: 10244
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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FS
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BaseQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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South Asian
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Latino
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

African
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.068408681583687e-4
allele num: 65518
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Other
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South Asian
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East Asian
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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DP
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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QD
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DP
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MQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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African
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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African
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South Asian
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European (Finnish)
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Latino
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MQ
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ClippingRankSum
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MQRankSum
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QD
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FS
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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Other
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East Asian
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South Asian
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African
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European (Non-Finnish)
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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FS
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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East Asian
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African
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South Asian
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European (Non-Finnish)
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MQRankSum
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DP
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FS
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MQ
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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African
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FS
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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African
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East Asian
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European (Non-Finnish)
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MQRankSum
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MQ
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QD
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9338
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.86811133943583e-4
allele num: 10706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15710
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

QD
type: SiteQuality
SIO_000300: 1.968e1

MQ
type: SiteQuality
SIO_000300: 5.649e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

DP
type: SiteQuality
SIO_000300: 1.362897e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 1.136e0

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.23e-1

GenotypeDepth
all individuals: 1441
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3133
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 344
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5592
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.254890472935586e-5
allele num: 61446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.19e0

FS
type: SiteQuality
SIO_000300: 2.899e0

VQSLOD
type: SiteQuality
SIO_000300: -9.637e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.382308e6

QD
type: SiteQuality
SIO_000300: 1.071e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeDepth
all individuals: 454
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.21036068748487e-4
allele num: 8262
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e-1

DP
type: SiteQuality
SIO_000300: 1.484568e6

MQRankSum
type: SiteQuality
SIO_000300: 9.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

QD
type: SiteQuality
SIO_000300: 1.616e1

GenotypeDepth
all individuals: 73
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3215
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38722
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.221448638084768e-4
allele num: 16374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65064
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.571e1

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

FS
type: SiteQuality
SIO_000300: 1.311e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.499777e6

GenotypeDepth
all individuals: 161
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3234
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
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variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6520
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.06880019543775e-4
allele num: 65494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.559e0

FS
type: SiteQuality
SIO_000300: 2.2681e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.510972e6

VQSLOD
type: SiteQuality
SIO_000300: -2.775e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

QD
type: SiteQuality
SIO_000300: 1.691e1

GenotypeDepth
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
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GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
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GenotypeQuality
all individuals: 39215
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6548
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3234
bin: 9.75e1
variant carriers: 1