15-56657883-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657883
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657883
    reference: chr 15
allele count: 24
allele frequency: 2.002302648045252e-4
allele num: 119862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.235G>A
  hgvsp: ENSP00000453431.1:p.Gly79Ser
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+15G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+15G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+15G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7756G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-315G>A
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22692
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26128
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46599
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly79Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

15-56657883-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657883
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657883
    reference: chr 15
allele count: 1
allele frequency: 8.342927700188551e-6
allele num: 119862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+15G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7756G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+15G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.235G>C
  hgvsp: ENSP00000453431.1:p.Gly79Arg
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-315G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+15G>C
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
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genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
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genotype quality: GenotypeQuality
  all individuals: 6895
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly79Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-56657890-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657890
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657890
    reference: chr 15
allele count: 1
allele frequency: 8.445090024659663e-6
allele num: 118412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+22C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+22C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+22C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*2C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-308C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7749C>A
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 524
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1162
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3680
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genotype quality: GenotypeQuality
  all individuals: 732
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

15-56657897-TTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657897
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657895
    reference: chr 15
allele count: 2
allele frequency: 1.700420003740924e-5
allele num: 117618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-299_-298delCT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+31_119+32delCT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*11_*12delCT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7740_-106-7739delCT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+31_119+32delCT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+31_-107+32delCT
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: TTC
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

15-56657901-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657901
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657901
    reference: chr 15
allele count: 6
allele frequency: 5.131801775603414e-5
allele num: 116918
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+33T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-297T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+33T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7738T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*13T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+33T>G
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22751
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
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genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 2022
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genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6495
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 88
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 366
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
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genotype depth: GenotypeDepth
  all individuals: 18331
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genotype depth: GenotypeDepth
  all individuals: 21
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genotype depth: GenotypeDepth
  all individuals: 1008
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genotype depth: GenotypeDepth
  all individuals: 6
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genotype depth: GenotypeDepth
  all individuals: 5
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genotype depth: GenotypeDepth
  all individuals: 19
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genotype quality: GenotypeQuality
  all individuals: 50
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genotype quality: GenotypeQuality
  all individuals: 6544
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 858
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 224
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genotype quality: GenotypeQuality
  all individuals: 5982
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 844
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genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

15-56657912-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657912
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657912
    reference: chr 15
allele count: 1
allele frequency: 8.696559641006019e-6
allele num: 114988
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7727G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-286G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+44G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+44G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*24G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+44G>C
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 353
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 460
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 782
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

15-56657926-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657926
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657926
    reference: chr 15
allele count: 1
allele frequency: 8.980530210503629e-6
allele num: 111352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7713A>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*38A>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+58A>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-272A>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+58A>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+58A>T
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 17778
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 734
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-56657931-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657931
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657931
    reference: chr 15
allele count: 2
allele frequency: 1.843997787202656e-5
allele num: 108460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+63T>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-267T>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7708T>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+63T>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*43T>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+63T>A
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6617
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-56657932-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657932
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657931
    reference: chr 15
allele count: 30
allele frequency: 2.777006387114691e-4
allele num: 108030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-265delC
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+65delC
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+65delC
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*45delC
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7706delC
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+65delC
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17534
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13247
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4760
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8727
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 9.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6095
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3886
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8387
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 2
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: AC
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

15-56657933-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657933
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657934
    reference: chr 15
allele count: 12
allele frequency: 1.11590537122452e-4
allele num: 107536
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7700dupT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-259dupT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+71dupT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+71dupT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*51dupT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+71dupT
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17483
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13231
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6070
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

15-56657933-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657933
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657933
    reference: chr 15
allele count: 1
allele frequency: 9.299211426871001e-6
allele num: 107536
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7706C>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+65C>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-265C>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*45C>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+65C>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+65C>G
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6070
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8392
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

15-56657934-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56657934
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56657934
    reference: chr 15
allele count: 1
allele frequency: 9.346143781075928e-6
allele num: 106996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-107+66T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-7705T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.119+66T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-264T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.119+66T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*46T>G
  variant of: http://identifiers.org/hgnc/29585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8612
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8074
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

15-56665599-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665599
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665599
    reference: chr 15
allele count: 46
allele frequency: 4.498953504293567e-4
allele num: 102246
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.120-40T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-40T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*204-40T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.120-40T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-106-40T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-106-40T>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15086
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15628
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7921
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6727
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6170
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

15-56665601-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665601
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665601
    reference: chr 15
allele count: 1
allele frequency: 9.771732332707942e-6
allele num: 102336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-106-38A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-106-38A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.120-38A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-38A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*204-38A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.120-38A>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7314
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6454
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
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genotype quality: GenotypeQuality
  all individuals: 316
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genotype quality: GenotypeQuality
  all individuals: 425
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2071
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/15-56665609-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665609
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665609
    reference: chr 15
allele count: 2
allele frequency: 1.923779842634809e-5
allele num: 103962
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.120-30C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*204-30C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-106-30C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-106-30C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-30C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.120-30C>A
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

15-56665613-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665613
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665613
    reference: chr 15
allele count: 1
allele frequency: 9.49162838376552e-6
allele num: 105356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-106-26A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-106-26A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.120-26A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*204-26A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-26A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.120-26A>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8526
  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32553
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8097
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

15-56665616-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665616
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665616
    reference: chr 15
allele count: 1
allele frequency: 9.413005007718664e-6
allele num: 106236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-106-23T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-106-23T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.120-23T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-23T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*204-23T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.120-23T>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34494
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 778
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-56665617-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665617
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665617
    reference: chr 15
allele count: 1
allele frequency: 9.3905531035778e-6
allele num: 106490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-106-22C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.120-22C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-22C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*204-22C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-106-22C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.120-22C>A
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8941
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29578
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7037
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genotype depth: GenotypeDepth
  all individuals: 258
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genotype depth: GenotypeDepth
  all individuals: 63
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
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genotype depth: GenotypeDepth
  all individuals: 81
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genotype depth: GenotypeDepth
  all individuals: 94
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
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genotype quality: GenotypeQuality
  all individuals: 7539
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genotype quality: GenotypeQuality
  all individuals: 575
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genotype quality: GenotypeQuality
  all individuals: 277
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genotype quality: GenotypeQuality
  all individuals: 1956
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genotype quality: GenotypeQuality
  all individuals: 37
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genotype quality: GenotypeQuality
  all individuals: 551
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genotype quality: GenotypeQuality
  all individuals: 295
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genotype quality: GenotypeQuality
  all individuals: 114
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genotype quality: GenotypeQuality
  all individuals: 35304
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

15-56665618-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665618
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665618
    reference: chr 15
allele count: 2
allele frequency: 1.871047412341429e-5
allele num: 106892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*204-21C>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-106-21C>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.120-21C>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.120-21C>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-106-21C>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-21C>T
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1601
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9140
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-56665628-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665628
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665628
    reference: chr 15
allele count: 1
allele frequency: 9.044208089139715e-6
allele num: 110568
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-106-11T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*204-11T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.120-11T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-106-11T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-106-11T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.120-11T>C
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

15-56665640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665640
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665640
    reference: chr 15
allele count: 3
allele frequency: 2.630194634402946e-5
allele num: 114060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-105C>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-105C>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.121C>T
  hgvsp: ENSP00000456593.1:p.Arg41Cys
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.121C>T
  hgvsp: ENSP00000342169.2:p.Arg41Cys
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-105C>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.5C>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*205C>T
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37501
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg41Cys
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

15-56665641-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665641
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665641
    reference: chr 15
allele count: 16
allele frequency: 1.398283606872564e-4
allele num: 114426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.6G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*206G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.122G>A
  hgvsp: ENSP00000342169.2:p.Arg41His
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-104G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-104G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-104G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.122G>A
  hgvsp: ENSP00000456593.1:p.Arg41His
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11168
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37640
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3837
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg41His
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-56665644-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665644
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665644
    reference: chr 15
allele count: 1
allele frequency: 8.693233187287017e-6
allele num: 115032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.125T>G
  hgvsp: ENSP00000456593.1:p.Leu42Ter
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.125T>G
  hgvsp: ENSP00000342169.2:p.Leu42Ter
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-101T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-101T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*209T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-101T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.9T>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu42Ter
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-56665657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665657
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665657
    reference: chr 15
allele count: 1
allele frequency: 8.585607088277212e-6
allele num: 116474
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.138G>A
  hgvsp: ENST00000352903.2:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-88G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-88G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-88G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.22G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.138G>A
  hgvsp: ENST00000561221.2:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*222G>A
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11638
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu46Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-56665659-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665659
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665659
    reference: chr 15
allele count: 2
allele frequency: 1.717121417655442e-5
allele num: 116474
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.140A>G
  hgvsp: ENSP00000456593.1:p.Gln47Arg
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.140A>G
  hgvsp: ENSP00000342169.2:p.Gln47Arg
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-86A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-86A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.24A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*224A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-86A>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38274
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4340
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln47Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

15-56665663-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665663
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665663
    reference: chr 15
allele count: 7
allele frequency: 6.009821765857344e-5
allele num: 116476
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-82A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*228A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-82A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.144A>G
  hgvsp: ENST00000561221.2:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.144A>G
  hgvsp: ENST00000352903.2:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-82A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.28A>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12009
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala48Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-56665669-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665669
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665669
    reference: chr 15
allele count: 1
allele frequency: 8.592837011067574e-6
allele num: 116376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.34A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-76A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.150A>C
  hgvsp: ENST00000352903.2:c.150A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-76A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-76A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.150A>C
  hgvsp: ENST00000561221.2:c.150A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*234A>C
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr50Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-56665671-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665671
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665671
    reference: chr 15
allele count: 2
allele frequency: 1.720163759589913e-5
allele num: 116268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-74C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*236C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.152C>A
  hgvsp: ENSP00000342169.2:p.Ala51Asp
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-74C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.36C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-74C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.152C>A
  hgvsp: ENSP00000456593.1:p.Ala51Asp
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala51Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

15-56665676-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665676
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665676
    reference: chr 15
allele count: 1
allele frequency: 8.628127696289906e-6
allele num: 115900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-69G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.41G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*241G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.157G>A
  hgvsp: ENSP00000456593.1:p.Val53Met
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.157G>A
  hgvsp: ENSP00000342169.2:p.Val53Met
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12107
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4456
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val53Met
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-56665677-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665677
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665677
    reference: chr 15
allele count: 1
allele frequency: 8.633192900062159e-6
allele num: 115832
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.158T>G
  hgvsp: ENSP00000342169.2:p.Val53Gly
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.158T>G
  hgvsp: ENSP00000456593.1:p.Val53Gly
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-68T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*242T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-68T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-68T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.42T>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36253
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
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genotype quality: GenotypeQuality
  all individuals: 483
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genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val53Gly
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-56665683-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665683
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665683
    reference: chr 15
allele count: 1
allele frequency: 8.689154197730393e-6
allele num: 115086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-62A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.164A>C
  hgvsp: ENSP00000342169.2:p.Gln55Pro
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-62A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.164A>C
  hgvsp: ENSP00000456593.1:p.Gln55Pro
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-62A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.48A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*248A>C
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12150
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5924
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln55Pro
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

15-56665688-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665688
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665688
    reference: chr 15
allele count: 1
allele frequency: 8.759635599159075e-6
allele num: 114160
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*253G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-57G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.169G>C
  hgvsp: ENSP00000342169.2:p.Ala57Pro
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.53G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-57G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-57G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.169G>C
  hgvsp: ENSP00000456593.1:p.Ala57Pro
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala57Pro
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

15-56665701-TAGTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665701
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665697
    reference: chr 15
allele count: 6
allele frequency: 5.533115697449233e-5
allele num: 108438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: 5_prime_UTR_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+4_-43+7delAGTA
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: 5_prime_UTR_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+4_-43+7delAGTA
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: 5_prime_UTR_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+4_-43+7delAGTA
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+4_183+7delAGTA
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+4_183+7delAGTA
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+4_*267+7delAGTA
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+4_67+7delAGTA
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23603
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 7.5e0
  variant carriers: 0
hgvs: c.183+4_183+7delAGTA
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: TAGTA
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

15-56665705-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665705
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665705
    reference: chr 15
allele count: 1
allele frequency: 9.498299804335023e-6
allele num: 105282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+3A>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+3A>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+3A>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+3A>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+3A>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+3A>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+3A>T
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19897
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.25e1
  variant carriers: 0
hgvs: c.183+3A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

15-56665707-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665707
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665707
    reference: chr 15
allele count: 2
allele frequency: 1.917582312220752e-5
allele num: 104298
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+5G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+5G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+5G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+5G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+5G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+5G>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+5G>C
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20832
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 3.25e1
  variant carriers: 0
hgvs: c.183+5G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

15-56665711-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665711
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665711
    reference: chr 15
allele count: 2
allele frequency: 2.077015743779338e-5
allele num: 96292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+9A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+9A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+9A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+9A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+9A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+9A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+9A>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17848
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
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genotype depth: GenotypeDepth
  all individuals: 2301
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genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 149
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genotype depth: GenotypeDepth
  all individuals: 7416
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genotype depth: GenotypeDepth
  all individuals: 13341
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genotype depth: GenotypeDepth
  all individuals: 605
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 95
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genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 24471
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 378
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genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3681
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-56665713-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665713
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665713
    reference: chr 15
allele count: 1
allele frequency: 1.039565877289644e-5
allele num: 96194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+11G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+11G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+11G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+11G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+11G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+11G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+11G>A
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7436
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
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genotype depth: GenotypeDepth
  all individuals: 9402
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
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genotype depth: GenotypeDepth
  all individuals: 17907
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
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genotype depth: GenotypeDepth
  all individuals: 2681
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 532
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genotype quality: GenotypeQuality
  all individuals: 715
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2116
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

15-56665715-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665715
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665715
    reference: chr 15
allele count: 1
allele frequency: 1.094379268079146e-5
allele num: 91376
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+13A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+13A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+13A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+13A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+13A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+13A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+13A>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2119
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 246
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 272
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

15-56665716-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665716
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665716
    reference: chr 15
allele count: 5
allele frequency: 5.485824629158255e-5
allele num: 91144
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+14C>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+14C>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+14C>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+14C>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+14C>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+14C>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+14C>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5347
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2261
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

15-56665718-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665718
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665718
    reference: chr 15
allele count: 1
allele frequency: 1.198465963566635e-5
allele num: 83440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+16A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+16A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+16A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+16A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+16A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+16A>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+16A>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25728
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

15-56665722-TTAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665722
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665719
    reference: chr 15
allele count: 1
allele frequency: 1.250781738586617e-5
allele num: 79950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+25_*267+27delAAT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+25_-43+27delAAT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+25_67+27delAAT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+25_-43+27delAAT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+25_-43+27delAAT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+25_183+27delAAT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+25_183+27delAAT
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8946
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: TTAA
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

15-56665722-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665722
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665722
    reference: chr 15
allele count: 1
allele frequency: 1.250781738586617e-5
allele num: 79950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+20T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+20T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+20T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+20T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+20T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+20T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+20T>C
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2916
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8946
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25533
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

15-56665726-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665726
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665726
    reference: chr 15
allele count: 1
allele frequency: 1.40964195094446e-5
allele num: 70940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+24T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+24T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+24T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+24T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+24T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+24T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+24T>C
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20367
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3523
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23690
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-56665727-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665727
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665727
    reference: chr 15
allele count: 27
allele frequency: 3.803459739674311e-4
allele num: 70988
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+25A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+25A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+25A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+25A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+25A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+25A>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+25A>C
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12588
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 20327
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-56665736-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665736
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665736
    reference: chr 15
allele count: 1
allele frequency: 1.596984892522917e-5
allele num: 62618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+34T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+34T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+34T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+34T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+34T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+34T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+34T>C
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4171
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

15-56665745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665745
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665745
    reference: chr 15
allele count: 201
allele frequency: 3.598796820167586e-3
allele num: 55852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+43G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+43G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+43G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+43G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+43G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+43G>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+43G>A
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 1.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 16475
  bin: 7.5e0
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 15203
  bin: 1.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 12665
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 15796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 9.75e1
  variant carriers: 190
genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13042
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 2
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

15-56665745-GTTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665745
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665742
    reference: chr 15
allele count: 11
allele frequency: 1.969490797106639e-4
allele num: 55852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+47_-43+49delTTT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+47_183+49delTTT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+47_67+49delTTT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+47_-43+49delTTT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+47_*267+49delTTT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+47_-43+49delTTT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+47_183+49delTTT
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15203
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16475
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2991
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4031
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13042
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GTTT
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-56665754-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56665754
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56665754
    reference: chr 15
allele count: 1
allele frequency: 2.105706464518846e-5
allele num: 47490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.183+52C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-43+52C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.183+52C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*267+52C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl transcript: ENST00000559142
  gene symbol: TEX9
  hgvsc: ENST00000559142.1:n.67+52C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-43+52C>A
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-43+52C>A
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8059
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9924
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11359
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-56676106-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56676106
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56676107
    reference: chr 15
allele count: 1
allele frequency: 8.664460117490079e-6
allele num: 115414
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.184-36dupT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-42-36dupT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-42-36dupT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.184-36dupT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*268-7327dupT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-42-36dupT
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
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genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
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genotype quality: GenotypeQuality
  all individuals: 373
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genotype quality: GenotypeQuality
  all individuals: 6137
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

15-56676106-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56676106
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56676106
    reference: chr 15
allele count: 29
allele frequency: 2.512693434072123e-4
allele num: 115414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*268-7335G>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.184-44G>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-42-44G>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.184-44G>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-42-44G>T
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-42-44G>T
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8237
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12396
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
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genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 551
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genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 17532
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-56676106-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56676106
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56676105
    reference: chr 15
allele count: 1
allele frequency: 8.664460117490079e-6
allele num: 115414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*268-7327delT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.184-36delT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-42-36delT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-42-36delT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.184-36delT
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-42-36delT
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 355
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 373
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8744
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 2610
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genotype quality: GenotypeQuality
  all individuals: 17532
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: GT
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

15-56676107-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56676107
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56676107
    reference: chr 15
allele count: 3
allele frequency: 2.585716502042716e-5
allele num: 116022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-42-43T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.184-43T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-42-43T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.184-43T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-42-43T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*268-7334T>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4990
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 15022
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

15-56676114-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56676114
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56676114
    reference: chr 15
allele count: 1
allele frequency: 8.479318941102651e-6
allele num: 117934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.184-36T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-42-36T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.184-36T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-42-36T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-42-36T>C
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*268-7327T>C
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18322
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

15-56676114-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56676114
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56676114
    reference: chr 15
allele count: 6
allele frequency: 5.087591364661591e-5
allele num: 117934
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000452791
  ensembl transcript: ENST00000560827
  gene symbol: TEX9
  hgvsc: ENST00000560827.1:c.-42-36T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453398
  ensembl transcript: ENST00000558083
  gene symbol: TEX9
  hgvsc: ENST00000558083.2:c.-42-36T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000342169
  ensembl transcript: ENST00000352903
  gene symbol: TEX9
  hgvsc: ENST00000352903.2:c.184-36T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000453431
  ensembl transcript: ENST00000558127
  gene symbol: TEX9
  hgvsc: ENST00000558127.1:c.*268-7327T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000456593
  ensembl transcript: ENST00000561221
  gene symbol: TEX9
  hgvsc: ENST00000561221.2:c.184-36T>G
  variant of: http://identifiers.org/hgnc/29585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151575
  ensembl protein: ENSP00000438745
  ensembl transcript: ENST00000537232
  gene symbol: TEX9
  hgvsc: ENST00000537232.1:c.-42-36T>G
  variant of: http://identifiers.org/hgnc/29585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1845
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

17-27023928-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27023928
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27023928
    reference: chr 17
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4037T>C
  hgvsp: ENSP00000319104.6:p.Met1346Thr
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4037T>C
  hgvsp: ENSP00000338143.4:p.Met1346Thr
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met1346Thr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11576
  num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

17-27023942-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27023942
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27023942
    reference: chr 17
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4051G>C
  hgvsp: ENSP00000338143.4:p.Asp1351His
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4051G>C
  hgvsp: ENSP00000319104.6:p.Asp1351His
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12781
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11709
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 34997
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp1351His
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-27023944-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27023944
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27023944
    reference: chr 17
allele count: 6
allele frequency: 4.94274651948266e-5
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4053C>T
  hgvsp: ENST00000314616.6:c.4053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4053C>T
  hgvsp: ENST00000347486.4:c.4053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35006
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10260
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1178
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2502
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp1351Asp
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-27023995-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27023995
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27023995
    reference: chr 17
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4104A>G
  hgvsp: ENST00000347486.4:c.4104A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4104A>G
  hgvsp: ENST00000314616.6:c.4104A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11696
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr1368Thr
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.155802126675913e-4
  allele num: 8652
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

17-27023997-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27023997
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27023997
    reference: chr 17
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4106T>C
  hgvsp: ENSP00000319104.6:p.Val1369Ala
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4106T>C
  hgvsp: ENSP00000338143.4:p.Val1369Ala
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3188
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val1369Ala
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10398
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-27024015-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024015
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024015
    reference: chr 17
allele count: 3
allele frequency: 2.471699045924168e-5
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4124A>G
  hgvsp: ENSP00000338143.4:p.Asp1375Gly
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4124A>G
  hgvsp: ENSP00000319104.6:p.Asp1375Gly
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35000
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp1375Gly
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

17-27024018-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024018
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024018
    reference: chr 17
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4127G>C
  hgvsp: ENSP00000338143.4:p.Gly1376Ala
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4127G>C
  hgvsp: ENSP00000319104.6:p.Gly1376Ala
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34980
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly1376Ala
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66712
  num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

17-27024022-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024022
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024022
    reference: chr 17
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4131C>T
  hgvsp: ENST00000314616.6:c.4131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4131C>T
  hgvsp: ENST00000347486.4:c.4131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34990
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 3183
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genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2503
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10251
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile1377Ile
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8650
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

17-27024024-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024024
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024024
    reference: chr 17
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4133A>G
  hgvsp: ENSP00000319104.6:p.Tyr1378Cys
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4133A>G
  hgvsp: ENSP00000338143.4:p.Tyr1378Cys
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10250
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2503
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr1378Cys
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 6.056201550387597e-5
  allele num: 16512
  num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

17-27024038-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024038
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024038
    reference: chr 17
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4147G>A
  hgvsp: ENSP00000338143.4:p.Val1383Met
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4147G>A
  hgvsp: ENSP00000319104.6:p.Val1383Met
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10235
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3178
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2501
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 34924
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 998
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val1383Met
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 8.641548565502938e-5
  allele num: 11572
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/17-27024041-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024041
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024041
    reference: chr 17
allele count: 7
allele frequency: 5.770245317858085e-5
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4150C>A
  hgvsp: ENST00000347486.4:c.4150C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4150C>A
  hgvsp: ENST00000314616.6:c.4150C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 97
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3175
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 10229
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg1384Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

17-27024043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024043
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024043
    reference: chr 17
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4152G>A
  hgvsp: ENST00000314616.6:c.4152G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4152G>A
  hgvsp: ENST00000347486.4:c.4152G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10235
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 107
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genotype quality: GenotypeQuality
  all individuals: 13
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2495
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3366
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg1384Arg
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8648
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

17-27024062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024062
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024062
    reference: chr 17
allele count: 4
allele frequency: 3.302019184731463e-5
allele num: 121138
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4171G>A
  hgvsp: ENSP00000319104.6:p.Ala1391Thr
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4171G>A
  hgvsp: ENSP00000338143.4:p.Ala1391Thr
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 11815
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 34240
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 3311
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala1391Thr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11548
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

17-27024072-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024072
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024072
    reference: chr 17
allele count: 58
allele frequency: 4.883963757620667e-4
allele num: 118756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4181T>G
  hgvsp: ENSP00000338143.4:p.Leu1394Arg
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4181T>G
  hgvsp: ENSP00000319104.6:p.Leu1394Arg
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 12048
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 27374
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12180
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 32995
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9411
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3868
  bin: 7.75e1
  variant carriers: 3
hgvs: p.Leu1394Arg
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16478
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-27024078-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024078
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024078
    reference: chr 17
allele count: 4
allele frequency: 3.309614429918914e-5
allele num: 120860
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4187C>A
  hgvsp: ENSP00000319104.6:p.Ala1396Asp
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4187C>A
  hgvsp: ENSP00000338143.4:p.Ala1396Asp
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27994
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 208
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9810
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 934
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 1062
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genotype quality: GenotypeQuality
  all individuals: 34803
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genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3958
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala1396Asp
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6588
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

17-27024081-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024081
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024081
    reference: chr 17
allele count: 2
allele frequency: 1.655930715858849e-5
allele num: 120778
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4190C>T
  hgvsp: ENSP00000319104.6:p.Thr1397Ile
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4190C>T
  hgvsp: ENSP00000338143.4:p.Thr1397Ile
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12451
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 247
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2851
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 921
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr1397Ile
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11524
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum

17-27024096-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024096
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024096
    reference: chr 17
allele count: 1
allele frequency: 8.30827005200977e-6
allele num: 120362
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4205G>A
  hgvsp: ENSP00000319104.6:p.Ser1402Asn
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4205G>A
  hgvsp: ENSP00000338143.4:p.Ser1402Asn
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser1402Asn
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11492
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

17-27024105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024105
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024105
    reference: chr 17
allele count: 1
allele frequency: 8.33694600993764e-6
allele num: 119948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4209+5G>A
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4209+5G>A
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9015
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32983
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3576
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2931
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
hgvs: c.4209+5G>A
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 888
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

17-27024125-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024125
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024125
    reference: chr 17
allele count: 1
allele frequency: 8.399973120086016e-6
allele num: 119048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4209+25C>G
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4209+25C>G
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8648
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8558
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

17-27024129-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27024129
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 27024129
    reference: chr 17
allele count: 1
allele frequency: 8.410146000134562e-6
allele num: 118904
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000319104
  ensembl transcript: ENST00000314616
  gene symbol: SUPT6H
  hgvsc: ENST00000314616.6:c.4209+29T>A
  variant of: http://identifiers.org/hgnc/11470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109111
  ensembl protein: ENSP00000338143
  ensembl transcript: ENST00000347486
  gene symbol: SUPT6H
  hgvsc: ENST00000347486.4:c.4209+29T>A
  variant of: http://identifiers.org/hgnc/11470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6895
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.906875371507826e-5
allele num: 10094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.272520679938187e-4
allele num: 66006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.972285166463308e-4
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.557815e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.445e1

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46599
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515013786625458e-5
allele num: 66006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.445e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

DP
type: SiteQuality
SIO_000300: 1.557815e6

VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

GenotypeQuality
all individuals: 716
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43479
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533130960046607e-5
allele num: 65226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.602e0

QD
type: SiteQuality
SIO_000300: 1.441e1

FS
type: SiteQuality
SIO_000300: 5.452e0

VQSLOD
type: SiteQuality
SIO_000300: -8.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.344e0

DP
type: SiteQuality
SIO_000300: 1.514776e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 856
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 41006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.254862592546116e-4
allele num: 15938
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.019e1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 3.133e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

DP
type: SiteQuality
SIO_000300: 1.478085e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

QD
type: SiteQuality
SIO_000300: 1.693e1

GenotypeQuality
all individuals: 1106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.316770186335404e-5
allele num: 64400
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.442949e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

QD
type: SiteQuality
SIO_000300: 1.485e1

FS
type: SiteQuality
SIO_000300: 9.457000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.184e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

GenotypeQuality
all individuals: 10214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 683
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578880889225717e-5
allele num: 63336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

DP
type: SiteQuality
SIO_000300: 1.301896e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

FS
type: SiteQuality
SIO_000300: 3.59e0

MQ
type: SiteQuality
SIO_000300: 5.886e1

VQSLOD
type: SiteQuality
SIO_000300: -1.222e0

QD
type: SiteQuality
SIO_000300: 1.674e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

GenotypeQuality
all individuals: 128
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8351
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7738
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.102049812651532e-4
allele num: 9074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15092
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.972e1

MQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.401e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 1.147049e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.637e0

GenotypeQuality
all individuals: 2083
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 170
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variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.350644999162338e-5
allele num: 59690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.121211e6

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 1.114e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 1859
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8594
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6728
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

South Asian
type: Population
allele count: 30
allele frequency: 2.053388090349076e-3
allele num: 14610
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59448
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.99e0

MQ
type: SiteQuality
SIO_000300: 6.057e1

DP
type: SiteQuality
SIO_000300: 1.12093e6

QD
type: SiteQuality
SIO_000300: 1.547e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 6239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8392
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14482
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.846840007591573e-4
allele num: 10538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.148897058823529e-4
allele num: 8704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.351031850575877e-4
allele num: 59214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

FS
type: SiteQuality
SIO_000300: 2.051e0

DP
type: SiteQuality
SIO_000300: 1.119522e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-2

QD
type: SiteQuality
SIO_000300: 1.153e1

MQ
type: SiteQuality
SIO_000300: 6.042e1

GenotypeQuality
all individuals: 3903
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
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variant carriers: 0

GenotypeQuality
all individuals: 210
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variant carriers: 0

GenotypeQuality
all individuals: 6239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3749
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
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variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.688789813219847e-5
allele num: 59214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

MQ
type: SiteQuality
SIO_000300: 6.042e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-2

QD
type: SiteQuality
SIO_000300: 1.153e1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

FS
type: SiteQuality
SIO_000300: 2.051e0

DP
type: SiteQuality
SIO_000300: 1.119522e6

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

GenotypeQuality
all individuals: 426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
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variant carriers: 0

GenotypeQuality
all individuals: 3927
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variant carriers: 0

GenotypeQuality
all individuals: 8402
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5066
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.697504668137837e-5
allele num: 58910
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

DP
type: SiteQuality
SIO_000300: 1.11999e6

QD
type: SiteQuality
SIO_000300: 1.13e1

MQRankSum
type: SiteQuality
SIO_000300: -5.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 44

GenotypeQuality
all individuals: 718
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 4.384843059158841e-4
allele num: 54734
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.811061163329247e-5
allele num: 14682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.815968841285297e-4
allele num: 10270
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.620745542949757e-3
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

FS
type: SiteQuality
SIO_000300: 1.543e0

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

DP
type: SiteQuality
SIO_000300: 1.222188e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

QD
type: SiteQuality
SIO_000300: 1.38e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 190
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GenotypeQuality
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GenotypeQuality
all individuals: 22252
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GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54800
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 1.241143e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 1.326e1

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

GenotypeQuality
all individuals: 752
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2127
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4916
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.58487184083169e-5
allele num: 55790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.466e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.64e-1

DP
type: SiteQuality
SIO_000300: 1.306904e6

FS
type: SiteQuality
SIO_000300: 1.696e0

MQRankSum
type: SiteQuality
SIO_000300: -1.181e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

QD
type: SiteQuality
SIO_000300: 8.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.293e0

GenotypeQuality
all individuals: 312
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 734
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 3.25e1
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GenotypeQuality
all individuals: 767
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GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.764975819831268e-5
allele num: 56658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14880
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.341823e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 1.362e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.46e-1

FS
type: SiteQuality
SIO_000300: 8.120000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 3662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7708
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.749536372861192e-5
allele num: 57158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10554
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.364514e6

QD
type: SiteQuality
SIO_000300: 1.18e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 2.327e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.64e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.678e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.48e-1

GenotypeQuality
all individuals: 2261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3660
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57318
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.458948164964057e-5
allele num: 10572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8970
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.034e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 1.807e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.963e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

QD
type: SiteQuality
SIO_000300: 4.55e0

DP
type: SiteQuality
SIO_000300: 1.373351e6

GenotypeQuality
all individuals: 343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35780
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 793
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variant carriers: 0

GenotypeQuality
all individuals: 766
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variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10596
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.331735251032095e-4
allele num: 15018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8998
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 6.3e0

FS
type: SiteQuality
SIO_000300: 4.435e0

MQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

DP
type: SiteQuality
SIO_000300: 1.382441e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -2.832e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.003e0

GenotypeQuality
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41706
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
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variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1491
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.267840593141798e-5
allele num: 10790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15310
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.541e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.583e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

DP
type: SiteQuality
SIO_000300: 1.447748e6

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44948
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variant carriers: 0

GenotypeQuality
all individuals: 3978
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variant carriers: 0

GenotypeQuality
all individuals: 853
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variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
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variant carriers: 0

GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 832
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.822220793416061e-5
allele num: 62212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.502506e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2139
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variant carriers: 16

GenotypeQuality
all individuals: 364
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 197
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GenotypeQuality
all individuals: 605
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variant carriers: 0

GenotypeQuality
all individuals: 105
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4277
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GenotypeQuality
all individuals: 841
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.35623869801085e-3
allele num: 11060
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.390593047034765e-5
allele num: 15648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62438
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.1e1

VQSLOD
type: SiteQuality
SIO_000300: 7.32e-1

DP
type: SiteQuality
SIO_000300: 1.507428e6

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e-1

FS
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2124
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GenotypeQuality
all individuals: 4358
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15700
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11106
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

QD
type: SiteQuality
SIO_000300: 1.675e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: -5.098e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.445e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.513244e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566170712607674e-5
allele num: 63850
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.266e0

DP
type: SiteQuality
SIO_000300: 1.528357e6

MQRankSum
type: SiteQuality
SIO_000300: 7.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e-1

FS
type: SiteQuality
SIO_000300: 1.974e0

QD
type: SiteQuality
SIO_000300: 9.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.209e0

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
all individuals: 844
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.130870381966187e-5
allele num: 63880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 15770
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.052e1

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

DP
type: SiteQuality
SIO_000300: 1.529378e6

FS
type: SiteQuality
SIO_000300: 2.587e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.659e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.14e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 123
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 341
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GenotypeQuality
all individuals: 191
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GenotypeQuality
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GenotypeQuality
all individuals: 246
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.095976201659621e-4
allele num: 63870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15766
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.0e0

FS
type: SiteQuality
SIO_000300: 1.786e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

DP
type: SiteQuality
SIO_000300: 1.532263e6

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 8.25e1
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GenotypeQuality
all individuals: 201
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.360513929525506e-5
allele num: 15722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.522893e6

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.037e0

FS
type: SiteQuality
SIO_000300: 1.485e0

QD
type: SiteQuality
SIO_000300: 1.098e1

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.244e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.274372371606984e-4
allele num: 15694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

DP
type: SiteQuality
SIO_000300: 1.521198e6

QD
type: SiteQuality
SIO_000300: 1.464e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573217544522056e-5
allele num: 63564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 1.623e0

QD
type: SiteQuality
SIO_000300: 7.54e0

MQ
type: SiteQuality
SIO_000300: 5.695e1

DP
type: SiteQuality
SIO_000300: 1.513028e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.169e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: -1.305e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.224e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2120
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573960399156357e-5
allele num: 63534
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.51043e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 5.226e0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.506e0

QD
type: SiteQuality
SIO_000300: 9.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 298
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.449116471043467e-5
allele num: 15506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

DP
type: SiteQuality
SIO_000300: 1.493472e6

QD
type: SiteQuality
SIO_000300: 1.264e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180916391119509e-4
allele num: 8468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62516
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.916e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.473009e6

MQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.608e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 2.875e0

QD
type: SiteQuality
SIO_000300: 1.052e1

VQSLOD
type: SiteQuality
SIO_000300: -2.171e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.017811704834606e-4
allele num: 58950
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

FS
type: SiteQuality
SIO_000300: 6.99e-1

MQ
type: SiteQuality
SIO_000300: 5.643e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

DP
type: SiteQuality
SIO_000300: 1.344589e6

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

QD
type: SiteQuality
SIO_000300: 1.132e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.755864587722995e-5
allele num: 56952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14552
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.241e1

MQ
type: SiteQuality
SIO_000300: 5.906e1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 1.285813e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

FS
type: SiteQuality
SIO_000300: 2.168e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2896
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.568053415511043e-4
allele num: 7788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5762
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.267117e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.871767074492799e-5
allele num: 51656
num of homozygotes: 0

FS
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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VQSLOD
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DP
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SIO_000300: 1.158203e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.68e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.938209869364655e-5
allele num: 51594
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 13710
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQ
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FS
type: SiteQuality
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ClippingRankSum
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QD
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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SIO_000300: -7.8e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.338688085676038e-4
allele num: 7470
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4934
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48944
num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.83e0

BaseQRankSum
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ClippingRankSum
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DP
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MQ
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.156e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

South Asian
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allele frequency: 3.788452795878163e-4
allele num: 13198
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6458
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48802
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

VQSLOD
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SIO_000300: 2.21e-1

ClippingRankSum
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FS
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

DP
type: SiteQuality
SIO_000300: 1.099717e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 6680
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.856665428889714e-4
allele num: 5386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44644
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

VQSLOD
type: SiteQuality
SIO_000300: -9.12e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.103e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.368e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.628e0

DP
type: SiteQuality
SIO_000300: 1.014849e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.579778830963665e-4
allele num: 6330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42782
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4094
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8914
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 1.06e-1

ReadPosRankSum
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MQ
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.74485e5

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.712e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 8.152616990053807e-5
allele num: 12266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8914
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4094
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42782
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

ClippingRankSum
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MQ
type: SiteQuality
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FS
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QD
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.74485e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3654
num of homozygotes: 0

Other
type: Population
allele count: 0
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South Asian
type: Population
allele count: 1
allele frequency: 8.594018563080097e-5
allele num: 11636
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37828
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.408e0

VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 21
allele frequency: 6.616257088846881e-3
allele num: 3174
num of homozygotes: 1

Other
type: Population
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allele frequency: 5.190311418685121e-3
allele num: 578
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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South Asian
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allele count: 0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 7.920582954905481e-5
allele num: 37876
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.55e-1

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.11e-2

MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32850
num of homozygotes: 0

Latino
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allele frequency: 1.287664177182591e-4
allele num: 7766
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2602
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ReadPosRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

FS
type: SiteQuality
SIO_000300: 4.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.88e-1

DP
type: SiteQuality
SIO_000300: 8.08175e5

GenotypeQuality
all individuals: 4031
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4254
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2991
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 12

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 2512
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 912
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 2402
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 373
bin: 7.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2324
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.109704641350211e-3
allele num: 474
num of homozygotes: 0

African
type: Population
allele count: 157
allele frequency: 3.308048883270122e-2
allele num: 4746
num of homozygotes: 2

South Asian
type: Population
allele count: 29
allele frequency: 2.79383429672447e-3
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.443280977312391e-4
allele num: 28650
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.002290950744559e-3
allele num: 6984
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

DP
type: SiteQuality
SIO_000300: 7.64838e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

QD
type: SiteQuality
SIO_000300: 1.233e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

FS
type: SiteQuality
SIO_000300: 8.92e-1

GenotypeQuality
all individuals: 817
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 768
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 264
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 11
allele frequency: 1.575028636884307e-3
allele num: 6984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28650
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

FS
type: SiteQuality
SIO_000300: 8.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 7.64838e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

GenotypeQuality
all individuals: 5069
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4543
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.220121539500338e-5
allele num: 23696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.208e1

VQSLOD
type: SiteQuality
SIO_000300: -1.313e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 7.44072e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.99e-2

GenotypeQuality
all individuals: 551
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8744
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17532
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560305819940709e-5
allele num: 64090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.921e0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

FS
type: SiteQuality
SIO_000300: 1.205e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

DP
type: SiteQuality
SIO_000300: 1.7858e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

QD
type: SiteQuality
SIO_000300: 1.107e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 340
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6137
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8744
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 2610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.808550475893275e-4
allele num: 64090
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.095801059926621e-4
allele num: 9812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14622
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.52112676056338e-3
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.687208885704049e-4
allele num: 11164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.205e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

DP
type: SiteQuality
SIO_000300: 1.7858e6

QD
type: SiteQuality
SIO_000300: 1.107e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.921e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

GenotypeQuality
all individuals: 340
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2988
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14622
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.195314367678699e-4
allele num: 8366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.921e0

FS
type: SiteQuality
SIO_000300: 1.205e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

DP
type: SiteQuality
SIO_000300: 1.7858e6

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

QD
type: SiteQuality
SIO_000300: 1.107e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

GenotypeQuality
all individuals: 18208
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.105782967886204e-5
allele num: 64396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14788
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.911067545891998e-5
allele num: 11222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 1.788124e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.556e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1718
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531581204435459e-5
allele num: 65292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.259e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

DP
type: SiteQuality
SIO_000300: 1.812253e6

QD
type: SiteQuality
SIO_000300: 1.598e1

GenotypeQuality
all individuals: 1019
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.067137809187279e-4
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65292
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 1.259e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.812253e6

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

QD
type: SiteQuality
SIO_000300: 1.598e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

DP
type: SiteQuality
SIO_000300: 1.812222e6

VQSLOD
type: SiteQuality
SIO_000300: 2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

QD
type: SiteQuality
SIO_000300: 1.168e1

MQ
type: SiteQuality
SIO_000300: 5.918e1

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.379e1

FS
type: SiteQuality
SIO_000300: 6.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.213e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.812467e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.49e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.934812760055479e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.21e-1

FS
type: SiteQuality
SIO_000300: 1.152e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.812511e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

QD
type: SiteQuality
SIO_000300: 1.223e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.952e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.316e1

MQRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 9.041e0

DP
type: SiteQuality
SIO_000300: 1.812119e6

MQ
type: SiteQuality
SIO_000300: 5.761e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.812025e6

QD
type: SiteQuality
SIO_000300: 1.175e1

FS
type: SiteQuality
SIO_000300: 2.423e0

VQSLOD
type: SiteQuality
SIO_000300: -1.467e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.442e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.895e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.467406380027739e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
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African
type: Population
allele count: 0
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allele num: 10394
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DP
type: SiteQuality
SIO_000300: 1.811722e6

FS
type: SiteQuality
SIO_000300: 2.904e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

QD
type: SiteQuality
SIO_000300: 1.436e1

VQSLOD
type: SiteQuality
SIO_000300: 9.72e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.811267e6

QD
type: SiteQuality
SIO_000300: 1.471e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.147e0

VQSLOD
type: SiteQuality
SIO_000300: -9.706e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.775e0

FS
type: SiteQuality
SIO_000300: 1.122e0

DP
type: SiteQuality
SIO_000300: 1.8112e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

DP
type: SiteQuality
SIO_000300: 1.811128e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

QD
type: SiteQuality
SIO_000300: 1.115e1

MQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.022e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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QD
type: SiteQuality
SIO_000300: 1.18e1

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.237e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.810255e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.158e0

FS
type: SiteQuality
SIO_000300: 9.97e-1

MQ
type: SiteQuality
SIO_000300: 5.839e1

South Asian
type: Population
allele count: 7
allele frequency: 4.239854633555421e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 6.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

DP
type: SiteQuality
SIO_000300: 1.810366e6

QD
type: SiteQuality
SIO_000300: 1.341e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 904
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 7.119e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.318e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.06e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.602e-1

DP
type: SiteQuality
SIO_000300: 1.808769e6

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.007629689705926e-5
allele num: 66582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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African
type: Population
allele count: 0
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East Asian
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allele count: 0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.019e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.225e0

DP
type: SiteQuality
SIO_000300: 1.794918e6

QD
type: SiteQuality
SIO_000300: 1.197e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.359300476947536e-4
allele num: 6290
num of homozygotes: 0

Other
type: Population
allele count: 1
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Latino
type: Population
allele count: 1
allele frequency: 8.707767328456984e-5
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 5.370074874186817e-4
allele num: 65176
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.723438767234388e-3
allele num: 9864
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.786213e6

FS
type: SiteQuality
SIO_000300: 4.6652e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.13e1

QD
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.085e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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allele num: 8632
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African
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 4
allele frequency: 3.46860908775581e-4
allele num: 11532
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.937e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.917e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

DP
type: SiteQuality
SIO_000300: 1.765554e6

QD
type: SiteQuality
SIO_000300: 1.262e1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e-1

South Asian
type: Population
allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 894
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506387081224391e-5
allele num: 66384
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.264e0

MQRankSum
type: SiteQuality
SIO_000300: -3.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: 7.53e-1

DP
type: SiteQuality
SIO_000300: 1.761064e6

QD
type: SiteQuality
SIO_000300: 1.291e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511395925276585e-5
allele num: 66164
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South Asian
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allele count: 0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
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African
type: Population
allele count: 0
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allele num: 10240
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MQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

QD
type: SiteQuality
SIO_000300: 1.75e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.204e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.612e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.73549e6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65942
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.113964294448521e-5
allele num: 16356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.109e0

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

DP
type: SiteQuality
SIO_000300: 1.703831e6

FS
type: SiteQuality
SIO_000300: 1.643e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528023959415684e-5
allele num: 65444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

QD
type: SiteQuality
SIO_000300: 1.887e1

VQSLOD
type: SiteQuality
SIO_000300: -1.274e0

FS
type: SiteQuality
SIO_000300: 1.1067e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

DP
type: SiteQuality
SIO_000300: 1.591849e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1