http://identifiers.org/exac.variant/16-547266-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 547266
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 547266
    reference: chr 16
allele count: 2
allele frequency: 1.219363492257042e-4
allele num: 16402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000412502
  ensembl transcript: ENST00000412256
  gene symbol: RAB11FIP3
  hgvsc: ENST00000412256.1:c.402-26C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.371+407C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.413+407C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.413+407C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1064+407C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1436+407C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1301+407C>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

16-547272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 547272
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 547272
    reference: chr 16
allele count: 4
allele frequency: 2.434570906877663e-4
allele num: 16430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1436+413A>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.413+413A>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.413+413A>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000412502
  ensembl transcript: ENST00000412256
  gene symbol: RAB11FIP3
  hgvsc: ENST00000412256.1:c.402-20A>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.371+413A>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1301+413A>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1064+413A>G
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

16-547297-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 547297
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 547297
    reference: chr 16
allele count: 1054
allele frequency: 6.390977443609022e-2
allele num: 16492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000412502
  ensembl transcript: ENST00000412256
  gene symbol: RAB11FIP3
  hgvsc: ENST00000412256.1:c.407T>C
  hgvsp: ENSP00000412502.1:p.Val136Ala
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1436+438T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1301+438T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.413+438T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.371+438T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1064+438T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.413+438T>C
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 2.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 2.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 7.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 8
hgvs: p.Val136Ala
num of homozygotes: 65
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

16-547302-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 547302
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 547302
    reference: chr 16
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1064+443A>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.371+443A>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.413+443A>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1301+443A>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.413+443A>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1436+443A>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000412502
  ensembl transcript: ENST00000412256
  gene symbol: RAB11FIP3
  hgvsc: ENST00000412256.1:c.*1A>T
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ

16-547309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 547309
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 547309
    reference: chr 16
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.371+450G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000412502
  ensembl transcript: ENST00000412256
  gene symbol: RAB11FIP3
  hgvsc: ENST00000412256.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1436+450G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1064+450G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1301+450G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.413+450G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.413+450G>A
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

16-552953-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 552953
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 552953
    reference: chr 16
allele count: 3
allele frequency: 2.501167211365304e-5
allele num: 119944
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.414-51T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1437-51T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1302-51T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1065-51T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.204T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.372-51T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.414-51T>C
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22931
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9331
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28364
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5394
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3972
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS

16-552957-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 552957
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 552957
    reference: chr 16
allele count: 1
allele frequency: 8.337085021593051e-6
allele num: 119946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.372-47C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1437-47C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.208C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1065-47C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1302-47C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.414-47C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.414-47C>G
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30258
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5374
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

16-552962-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 552962
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 552962
    reference: chr 16
allele count: 4
allele frequency: 3.333166674999583e-5
allele num: 120006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.213G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.372-42G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.414-42G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1437-42G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.414-42G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1065-42G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1302-42G>T
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10606
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8617
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-552977-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 552977
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 552977
    reference: chr 16
allele count: 1
allele frequency: 8.320990530712775e-6
allele num: 120178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.414-27C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1065-27C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.372-27C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1302-27C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1437-27C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.228C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.414-27C>A
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-552977-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 552977
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 552977
    reference: chr 16
allele count: 1
allele frequency: 8.320990530712775e-6
allele num: 120178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.414-27C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.372-27C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1302-27C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.414-27C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.228C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1065-27C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1437-27C>G
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-552981-CTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 552981
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 552978
    reference: chr 16
allele count: 131
allele frequency: 1.089578308242535e-3
allele num: 120230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.239_241delTGT
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.414-16_414-14delTGT
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1437-16_1437-14delTGT
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.372-16_372-14delTGT
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1065-16_1065-14delTGT
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1302-16_1302-14delTGT
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.414-16_414-14delTGT
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 13349
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23858
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11543
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: CTGT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

16-552981-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 552981
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 552981
    reference: chr 16
allele count: 4
allele frequency: 3.32695666638942e-5
allele num: 120230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.232C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1437-23C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.372-23C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.414-23C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1302-23C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1065-23C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.414-23C>T
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3762
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

16-552982-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 552982
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 552982
    reference: chr 16
allele count: 1
allele frequency: 8.333472224537076e-6
allele num: 119998
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.233T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.414-22T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1437-22T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.372-22T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.414-22T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1065-22T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1302-22T>C
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5333
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2446
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

16-552989-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 552989
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 552989
    reference: chr 16
allele count: 13
allele frequency: 1.080254607701384e-4
allele num: 120342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.414-15G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.372-15G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.414-15G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1302-15G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.240G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1065-15G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1437-15G>T
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-552992-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 552992
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 552992
    reference: chr 16
allele count: 2
allele frequency: 1.661488361274029e-5
allele num: 120374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.243C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.414-12C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.414-12C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1302-12C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1437-12C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.372-12C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1065-12C>G
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34020
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5353
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

16-552994-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 552994
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 552994
    reference: chr 16
allele count: 1
allele frequency: 8.306199747491528e-6
allele num: 120392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.372-10T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.414-10T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.414-10T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1065-10T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.245T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1302-10T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1437-10T>C
  variant of: http://identifiers.org/hgnc/17224
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5351
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

16-553005-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553005
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553005
    reference: chr 16
allele count: 19
allele frequency: 1.577287066246057e-4
allele num: 120460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.373T>C
  hgvsp: ENSP00000399614.1:p.Tyr125His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1066T>C
  hgvsp: ENSP00000399644.1:p.Tyr356His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.256T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1438T>C
  hgvsp: ENSP00000398730.1:p.Tyr480His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.415T>C
  hgvsp: ENSP00000415919.1:p.Tyr139His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.415T>C
  hgvsp: ENSP00000404331.1:p.Tyr139His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1303T>C
  hgvsp: ENSP00000262305.4:p.Tyr435His
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr435His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-553013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553013
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553013
    reference: chr 16
allele count: 1
allele frequency: 8.299995020002988e-6
allele num: 120482
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1311C>T
  hgvsp: ENST00000262305.4:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.381C>T
  hgvsp: ENST00000452814.1:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1074C>T
  hgvsp: ENST00000434585.1:c.1074C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1446C>T
  hgvsp: ENST00000457159.1:c.1446C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.423C>T
  hgvsp: ENST00000449879.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.423C>T
  hgvsp: ENST00000450428.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.264C>T
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34182
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5347
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His437His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/16-553015-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553015
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553015
    reference: chr 16
allele count: 1
allele frequency: 8.300132802124834e-6
allele num: 120480
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1076A>C
  hgvsp: ENSP00000399644.1:p.Gln359Pro
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.383A>C
  hgvsp: ENSP00000399614.1:p.Gln128Pro
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1448A>C
  hgvsp: ENSP00000398730.1:p.Gln483Pro
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1313A>C
  hgvsp: ENSP00000262305.4:p.Gln438Pro
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.266A>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.425A>C
  hgvsp: ENSP00000404331.1:p.Gln142Pro
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.425A>C
  hgvsp: ENSP00000415919.1:p.Gln142Pro
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34178
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln438Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

16-553026-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553026
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553026
    reference: chr 16
allele count: 9
allele frequency: 7.469251580991585e-5
allele num: 120494
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1324C>G
  hgvsp: ENSP00000262305.4:p.Leu442Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.394C>G
  hgvsp: ENSP00000399614.1:p.Leu132Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.436C>G
  hgvsp: ENSP00000415919.1:p.Leu146Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.277C>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1459C>G
  hgvsp: ENSP00000398730.1:p.Leu487Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.436C>G
  hgvsp: ENSP00000404331.1:p.Leu146Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1087C>G
  hgvsp: ENSP00000399644.1:p.Leu363Val
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5350
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8819
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu442Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

16-553035-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553035
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553035
    reference: chr 16
allele count: 27
allele frequency: 2.240440785979819e-4
allele num: 120512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.445G>A
  hgvsp: ENSP00000404331.1:p.Glu149Lys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.445G>A
  hgvsp: ENSP00000415919.1:p.Glu149Lys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1468G>A
  hgvsp: ENSP00000398730.1:p.Glu490Lys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1333G>A
  hgvsp: ENSP00000262305.4:p.Glu445Lys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1096G>A
  hgvsp: ENSP00000399644.1:p.Glu366Lys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.403G>A
  hgvsp: ENSP00000399614.1:p.Glu135Lys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.286G>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8810
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu445Lys
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-553037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553037
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553037
    reference: chr 16
allele count: 4
allele frequency: 3.319061369444721e-5
allele num: 120516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1098G>A
  hgvsp: ENST00000434585.1:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1470G>A
  hgvsp: ENST00000457159.1:c.1470G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.447G>A
  hgvsp: ENST00000449879.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.405G>A
  hgvsp: ENST00000452814.1:c.405G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.288G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1335G>A
  hgvsp: ENST00000262305.4:c.1335G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.447G>A
  hgvsp: ENST00000450428.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13467
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu445Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

16-553038-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553038
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553038
    reference: chr 16
allele count: 1
allele frequency: 8.297791128001726e-6
allele num: 120514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.406G>T
  hgvsp: ENSP00000399614.1:p.Ala136Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1471G>T
  hgvsp: ENSP00000398730.1:p.Ala491Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.448G>T
  hgvsp: ENSP00000415919.1:p.Ala150Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1336G>T
  hgvsp: ENSP00000262305.4:p.Ala446Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1099G>T
  hgvsp: ENSP00000399644.1:p.Ala367Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.289G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.448G>T
  hgvsp: ENSP00000404331.1:p.Ala150Ser
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala446Ser
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

16-553039-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553039
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553039
    reference: chr 16
allele count: 1
allele frequency: 8.298066550493736e-6
allele num: 120510
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.449C>G
  hgvsp: ENSP00000404331.1:p.Ala150Gly
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.407C>G
  hgvsp: ENSP00000399614.1:p.Ala136Gly
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.449C>G
  hgvsp: ENSP00000415919.1:p.Ala150Gly
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1337C>G
  hgvsp: ENSP00000262305.4:p.Ala446Gly
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1472C>G
  hgvsp: ENSP00000398730.1:p.Ala491Gly
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1100C>G
  hgvsp: ENSP00000399644.1:p.Ala367Gly
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.290C>G
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5330
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala446Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS

16-553043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553043
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553043
    reference: chr 16
allele count: 1
allele frequency: 8.29737802854298e-6
allele num: 120520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.453G>A
  hgvsp: ENST00000449879.1:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1341G>A
  hgvsp: ENST00000262305.4:c.1341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.411G>A
  hgvsp: ENST00000452814.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1476G>A
  hgvsp: ENST00000457159.1:c.1476G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.453G>A
  hgvsp: ENST00000450428.1:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1104G>A
  hgvsp: ENST00000434585.1:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.294G>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu447Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

16-553049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553049
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553049
    reference: chr 16
allele count: 2
allele frequency: 1.659751037344398e-5
allele num: 120500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1110C>T
  hgvsp: ENST00000434585.1:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.300C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.417C>T
  hgvsp: ENST00000452814.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1482C>T
  hgvsp: ENST00000457159.1:c.1482C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.459C>T
  hgvsp: ENST00000449879.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.459C>T
  hgvsp: ENST00000450428.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1347C>T
  hgvsp: ENST00000262305.4:c.1347C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8809
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5332
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp449Asp
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

16-553052-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553052
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553052
    reference: chr 16
allele count: 2
allele frequency: 1.65977858553669e-5
allele num: 120498
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1113T>C
  hgvsp: ENST00000434585.1:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1350T>C
  hgvsp: ENST00000262305.4:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.462T>C
  hgvsp: ENST00000450428.1:c.462T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1485T>C
  hgvsp: ENST00000457159.1:c.1485T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.420T>C
  hgvsp: ENST00000452814.1:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.303T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.462T>C
  hgvsp: ENST00000449879.1:c.462T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8808
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5332
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro450Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

16-553054-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553054
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553054
    reference: chr 16
allele count: 2
allele frequency: 1.659806134643474e-5
allele num: 120496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.422C>T
  hgvsp: ENSP00000399614.1:p.Ser141Phe
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1487C>T
  hgvsp: ENSP00000398730.1:p.Ser496Phe
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1352C>T
  hgvsp: ENSP00000262305.4:p.Ser451Phe
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.305C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.464C>T
  hgvsp: ENSP00000404331.1:p.Ser155Phe
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.464C>T
  hgvsp: ENSP00000415919.1:p.Ser155Phe
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1115C>T
  hgvsp: ENSP00000399644.1:p.Ser372Phe
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser451Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

16-553058-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553058
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553058
    reference: chr 16
allele count: 2
allele frequency: 1.659999004000598e-5
allele num: 120482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.426C>T
  hgvsp: ENST00000452814.1:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1119C>T
  hgvsp: ENST00000434585.1:c.1119C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.309C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.468C>T
  hgvsp: ENST00000450428.1:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1491C>T
  hgvsp: ENST00000457159.1:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1356C>T
  hgvsp: ENST00000262305.4:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000404331
  ensembl transcript: ENST00000449879
  gene symbol: RAB11FIP3
  hgvsc: ENST00000449879.1:c.468C>T
  hgvsp: ENST00000449879.1:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro452Pro
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/16-553073-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553073
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553073
    reference: chr 16
allele count: 1
allele frequency: 8.304406317992327e-6
allele num: 120418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1134C>A
  hgvsp: ENST00000434585.1:c.1134C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1371C>A
  hgvsp: ENST00000262305.4:c.1371C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.483C>A
  hgvsp: ENST00000450428.1:c.483C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.324C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1506C>A
  hgvsp: ENST00000457159.1:c.1506C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.441C>A
  hgvsp: ENST00000452814.1:c.441C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5323
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly457Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

16-553074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553074
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553074
    reference: chr 16
allele count: 1
allele frequency: 8.304820117596252e-6
allele num: 120412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.325C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1507C>T
  hgvsp: ENSP00000398730.1:p.Pro503Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.484C>T
  hgvsp: ENSP00000415919.1:p.Pro162Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1372C>T
  hgvsp: ENSP00000262305.4:p.Pro458Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1135C>T
  hgvsp: ENSP00000399644.1:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.442C>T
  hgvsp: ENSP00000399614.1:p.Pro148Ser
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3767
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro458Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

16-553086-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553086
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553086
    reference: chr 16
allele count: 1
allele frequency: 8.307579835842223e-6
allele num: 120372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.454A>G
  hgvsp: ENSP00000399614.1:p.Ile152Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1384A>G
  hgvsp: ENSP00000262305.4:p.Ile462Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.337A>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1519A>G
  hgvsp: ENSP00000398730.1:p.Ile507Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1147A>G
  hgvsp: ENSP00000399644.1:p.Ile383Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.496A>G
  hgvsp: ENSP00000415919.1:p.Ile166Val
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2446
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile462Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

16-553087-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553087
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553087
    reference: chr 16
allele count: 2
allele frequency: 1.661571181709424e-5
allele num: 120368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.455T>C
  hgvsp: ENSP00000399614.1:p.Ile152Thr
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1520T>C
  hgvsp: ENSP00000398730.1:p.Ile507Thr
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.338T>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1385T>C
  hgvsp: ENSP00000262305.4:p.Ile462Thr
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1148T>C
  hgvsp: ENSP00000399644.1:p.Ile383Thr
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.497T>C
  hgvsp: ENSP00000415919.1:p.Ile166Thr
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8762
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile462Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

16-553095-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553095
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553095
    reference: chr 16
allele count: 1
allele frequency: 8.319190709127816e-6
allele num: 120204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.463A>G
  hgvsp: ENSP00000399614.1:p.Lys155Glu
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.346A>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.505A>G
  hgvsp: ENSP00000415919.1:p.Lys169Glu
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1528A>G
  hgvsp: ENSP00000398730.1:p.Lys510Glu
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1156A>G
  hgvsp: ENSP00000399644.1:p.Lys386Glu
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1393A>G
  hgvsp: ENSP00000262305.4:p.Lys465Glu
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys465Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-553102-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553102
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553102
    reference: chr 16
allele count: 1
allele frequency: 8.335695113615524e-6
allele num: 119966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.348+5G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1158+5G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1395+5G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.465+5G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.507+5G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1530+5G>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10760
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33097
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1395+5G>A
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/16-553103-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553103
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553103
    reference: chr 16
allele count: 1
allele frequency: 8.336807002917883e-6
allele num: 119950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.507+6C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.348+6C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1530+6C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.465+6C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1395+6C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1158+6C>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8607
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1395+6C>A
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/16-553104-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553104
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553104
    reference: chr 16
allele count: 1
allele frequency: 8.337919188887221e-6
allele num: 119934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1530+7C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1158+7C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.507+7C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.465+7C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.348+7C>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1395+7C>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8610
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1395+7C>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-553109-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553109
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553109
    reference: chr 16
allele count: 1
allele frequency: 8.358548287333457e-6
allele num: 119638
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1395+12A>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.507+12A>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.348+12A>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1530+12A>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.465+12A>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1158+12A>C
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3691
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-553111-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553111
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553111
    reference: chr 16
allele count: 1
allele frequency: 8.360085607276618e-6
allele num: 119616
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1530+14G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1158+14G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.507+14G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.348+14G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.465+14G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1395+14G>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32042
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5304
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum

16-553113-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553113
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553113
    reference: chr 16
allele count: 4
allele frequency: 3.345824411134904e-5
allele num: 119552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.465+16C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.507+16C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1530+16C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1158+16C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.348+16C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1395+16C>T
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8270
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

16-553116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553116
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553116
    reference: chr 16
allele count: 7782
allele frequency: 6.520427656936019e-2
allele num: 119348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1158+19G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1530+19G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.348+19G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1395+19G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.465+19G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.507+19G>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 1.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 4.25e1
  variant carriers: 1115
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 12474
  bin: 3.25e1
  variant carriers: 875
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.25e1
  variant carriers: 739
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 360
genotype depth: GenotypeDepth
  all individuals: 22485
  bin: 2.75e1
  variant carriers: 567
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 3.75e1
  variant carriers: 1041
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 2.25e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 982
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.75e1
  variant carriers: 539
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 8.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2450
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 8.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 9.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 30183
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 6
num of homozygotes: 313
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

16-553121-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553121
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553121
    reference: chr 16
allele count: 7
allele frequency: 5.881759822538904e-5
allele num: 119012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1158+24G>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.465+24G>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.348+24G>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.507+24G>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1530+24G>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1395+24G>C
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12899
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23929
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9176
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8242
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

16-553142-ACACAGC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553142
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553136
    reference: chr 16
allele count: 3
allele frequency: 2.556062981391861e-5
allele num: 117368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.465+49_465+54delAGCCAC
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.507+49_507+54delAGCCAC
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1395+49_1395+54delAGCCAC
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.348+49_348+54delAGCCAC
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1530+49_1530+54delAGCCAC
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1158+49_1158+54delAGCCAC
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12315
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2778
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4941
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: ACACAGC
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-553144-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553144
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553144
    reference: chr 16
allele count: 11
allele frequency: 9.46431951542684e-5
allele num: 116226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1158+47A>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1395+47A>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.348+47A>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.507+47A>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1530+47A>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.465+47A>C
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11425
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13566
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13076
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3506
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5664
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4655
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5811
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12645
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2685
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

16-553149-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 553149
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 553149
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 116096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1158+52C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.465+52C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1395+52C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.348+52C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1530+52C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.507+52C>T
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6514
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5764
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

16-555492-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555492
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555492
    reference: chr 16
allele count: 1
allele frequency: 1.965872454195172e-5
allele num: 50868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.466-32G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1396-32G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.508-32G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1531-32G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1159-32G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.349-32G>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13991
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4711
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

16-555498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555498
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555498
    reference: chr 16
allele count: 1
allele frequency: 1.851440420647264e-5
allele num: 54012
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1396-26C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1531-26C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.466-26C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.349-26C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.508-26C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1159-26C>T
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12145
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5354
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3354
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10685
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

16-555505-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555505
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555505
    reference: chr 16
allele count: 3244
allele frequency: 5.235973916973336e-2
allele num: 61956
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1396-19G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.508-19G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.466-19G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.349-19G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1531-19G>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1159-19G>T
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 1.75e1
  variant carriers: 930
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 26599
  bin: 7.5e0
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 10051
  bin: 1.25e1
  variant carriers: 965
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 2.75e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 13983
  bin: 2.25e1
  variant carriers: 565
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 9.75e1
  variant carriers: 3023
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 25714
  bin: 2.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 3525
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 6.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 3.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 4.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 1.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 3.25e1
  variant carriers: 12
num of homozygotes: 85
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

16-555527-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555527
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555527
    reference: chr 16
allele count: 2
allele frequency: 2.286445948417779e-5
allele num: 87472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.352G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.469G>A
  hgvsp: ENSP00000399614.1:p.Val157Ile
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1162G>A
  hgvsp: ENSP00000399644.1:p.Val388Ile
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.511G>A
  hgvsp: ENSP00000415919.1:p.Val171Ile
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1399G>A
  hgvsp: ENSP00000262305.4:p.Val467Ile
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1534G>A
  hgvsp: ENSP00000398730.1:p.Val512Ile
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30757
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val467Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

16-555542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555542
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555542
    reference: chr 16
allele count: 1
allele frequency: 1.020949891779311e-5
allele num: 97948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.367C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1177C>T
  hgvsp: ENSP00000399644.1:p.Arg393Cys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1414C>T
  hgvsp: ENSP00000262305.4:p.Arg472Cys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1549C>T
  hgvsp: ENSP00000398730.1:p.Arg517Cys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.484C>T
  hgvsp: ENSP00000399614.1:p.Arg162Cys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.526C>T
  hgvsp: ENSP00000415919.1:p.Arg176Cys
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6860
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11577
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg472Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-555543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555543
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555543
    reference: chr 16
allele count: 1
allele frequency: 1.013253353868601e-5
allele num: 98692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.368G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.527G>A
  hgvsp: ENSP00000415919.1:p.Arg176His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1415G>A
  hgvsp: ENSP00000262305.4:p.Arg472His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1178G>A
  hgvsp: ENSP00000399644.1:p.Arg393His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1550G>A
  hgvsp: ENSP00000398730.1:p.Arg517His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.485G>A
  hgvsp: ENSP00000399614.1:p.Arg162His
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg472His
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

16-555547-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555547
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555547
    reference: chr 16
allele count: 5
allele frequency: 4.989123710311521e-5
allele num: 100218
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1419G>A
  hgvsp: ENST00000262305.4:c.1419G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1182G>A
  hgvsp: ENST00000434585.1:c.1182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.372G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1554G>A
  hgvsp: ENST00000457159.1:c.1554G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.531G>A
  hgvsp: ENST00000450428.1:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.489G>A
  hgvsp: ENST00000452814.1:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37175
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val473Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

16-555562-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555562
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555562
    reference: chr 16
allele count: 8
allele frequency: 7.829780570399515e-5
allele num: 102174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1569G>A
  hgvsp: ENST00000457159.1:c.1569G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1434G>A
  hgvsp: ENST00000262305.4:c.1434G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.546G>A
  hgvsp: ENST00000450428.1:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.504G>A
  hgvsp: ENST00000452814.1:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1197G>A
  hgvsp: ENST00000434585.1:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.387G>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8485
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36196
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys478Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

16-555566-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555566
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555566
    reference: chr 16
allele count: 1
allele frequency: 9.838065442811326e-6
allele num: 101646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1573A>T
  hgvsp: ENSP00000398730.1:p.Thr525Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.508A>T
  hgvsp: ENSP00000399614.1:p.Thr170Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1438A>T
  hgvsp: ENSP00000262305.4:p.Thr480Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.550A>T
  hgvsp: ENSP00000415919.1:p.Thr184Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1201A>T
  hgvsp: ENSP00000399644.1:p.Thr401Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.391A>T
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr480Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

16-555567-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555567
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555567
    reference: chr 16
allele count: 2
allele frequency: 1.984323841650957e-5
allele num: 100790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.509C>T
  hgvsp: ENSP00000399614.1:p.Thr170Met
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1439C>T
  hgvsp: ENSP00000262305.4:p.Thr480Met
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1202C>T
  hgvsp: ENSP00000399644.1:p.Thr401Met
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.392C>T
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.551C>T
  hgvsp: ENSP00000415919.1:p.Thr184Met
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1574C>T
  hgvsp: ENSP00000398730.1:p.Thr525Met
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8789
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34469
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10749
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr480Met
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

16-555568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555568
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555568
    reference: chr 16
allele count: 4
allele frequency: 3.963692576003805e-5
allele num: 100916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.393G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.510G>A
  hgvsp: ENST00000452814.1:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.552G>A
  hgvsp: ENST00000450428.1:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1575G>A
  hgvsp: ENST00000457159.1:c.1575G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1440G>A
  hgvsp: ENST00000262305.4:c.1440G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1203G>A
  hgvsp: ENST00000434585.1:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34514
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 38526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr480Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ

16-555569-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555569
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555569
    reference: chr 16
allele count: 15
allele frequency: 1.485001485001485e-4
allele num: 101010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1204G>A
  hgvsp: ENSP00000399644.1:p.Ala402Thr
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.553G>A
  hgvsp: ENSP00000415919.1:p.Ala185Thr
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.394G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1441G>A
  hgvsp: ENSP00000262305.4:p.Ala481Thr
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1576G>A
  hgvsp: ENSP00000398730.1:p.Ala526Thr
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.511G>A
  hgvsp: ENSP00000399614.1:p.Ala171Thr
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8813
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8937
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34500
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10845
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala481Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

16-555570-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555570
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555570
    reference: chr 16
allele count: 4
allele frequency: 3.954366609328351e-5
allele num: 101154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.554C>T
  hgvsp: ENSP00000415919.1:p.Ala185Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.512C>T
  hgvsp: ENSP00000399614.1:p.Ala171Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1442C>T
  hgvsp: ENSP00000262305.4:p.Ala481Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1577C>T
  hgvsp: ENSP00000398730.1:p.Ala526Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1205C>T
  hgvsp: ENSP00000399644.1:p.Ala402Val
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.395C>T
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala481Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-555575-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555575
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555575
    reference: chr 16
allele count: 1
allele frequency: 9.962342345932375e-6
allele num: 100378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.400A>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1447A>G
  hgvsp: ENSP00000262305.4:p.Thr483Ala
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1582A>G
  hgvsp: ENSP00000398730.1:p.Thr528Ala
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1210A>G
  hgvsp: ENSP00000399644.1:p.Thr404Ala
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.559A>G
  hgvsp: ENSP00000415919.1:p.Thr187Ala
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.517A>G
  hgvsp: ENSP00000399614.1:p.Thr173Ala
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr483Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

16-555578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555578
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555578
    reference: chr 16
allele count: 6
allele frequency: 6.002400960384154e-5
allele num: 99960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1585G>A
  hgvsp: ENSP00000398730.1:p.Gly529Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.520G>A
  hgvsp: ENSP00000399614.1:p.Gly174Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1450G>A
  hgvsp: ENSP00000262305.4:p.Gly484Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.562G>A
  hgvsp: ENSP00000415919.1:p.Gly188Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1213G>A
  hgvsp: ENSP00000399644.1:p.Gly405Ser
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.403G>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9367
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33032
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly484Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-555594-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555594
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555594
    reference: chr 16
allele count: 1
allele frequency: 1.087334725121782e-5
allele num: 91968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1229G>A
  hgvsp: ENSP00000399644.1:p.Arg410His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.578G>A
  hgvsp: ENSP00000415919.1:p.Arg193His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1601G>A
  hgvsp: ENSP00000398730.1:p.Arg534His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.419G>A
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1466G>A
  hgvsp: ENSP00000262305.4:p.Arg489His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.536G>A
  hgvsp: ENSP00000399614.1:p.Arg179His
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18818
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg489His
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

16-555600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555600
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555600
    reference: chr 16
allele count: 1
allele frequency: 1.121377949224007e-5
allele num: 89176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1235G>A
  hgvsp: ENSP00000399644.1:p.Arg412Lys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399614
  ensembl transcript: ENST00000452814
  gene symbol: RAB11FIP3
  hgvsc: ENST00000452814.1:c.542G>A
  hgvsp: ENSP00000399614.1:p.Arg181Lys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1472G>A
  hgvsp: ENSP00000262305.4:p.Arg491Lys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1607G>A
  hgvsp: ENSP00000398730.1:p.Arg536Lys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.584G>A
  hgvsp: ENSP00000415919.1:p.Arg195Lys
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.425G>A
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28686
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg491Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

16-555615-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555615
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555615
    reference: chr 16
allele count: 1
allele frequency: 1.266175390615108e-5
allele num: 78978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1250A>G
  hgvsp: ENSP00000399644.1:p.Gln417Arg
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1622A>G
  hgvsp: ENSP00000398730.1:p.Gln541Arg
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.599A>G
  hgvsp: ENSP00000415919.1:p.Gln200Arg
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.440A>G
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1487A>G
  hgvsp: ENSP00000262305.4:p.Gln496Arg
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17843
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln496Arg
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-555616-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 555616
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 555616
    reference: chr 16
allele count: 2
allele frequency: 2.552452907243861e-5
allele num: 78356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000399644
  ensembl transcript: ENST00000434585
  gene symbol: RAB11FIP3
  hgvsc: ENST00000434585.1:c.1251G>C
  hgvsp: ENSP00000399644.1:p.Gln417His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000415919
  ensembl transcript: ENST00000450428
  gene symbol: RAB11FIP3
  hgvsc: ENST00000450428.1:c.600G>C
  hgvsp: ENSP00000415919.1:p.Gln200His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090565
  ensembl transcript: ENST00000487899
  gene symbol: RAB11FIP3
  hgvsc: ENST00000487899.1:n.441G>C
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000398730
  ensembl transcript: ENST00000457159
  gene symbol: RAB11FIP3
  hgvsc: ENST00000457159.1:c.1623G>C
  hgvsp: ENSP00000398730.1:p.Gln541His
  variant of: http://identifiers.org/hgnc/17224
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090565
  ensembl protein: ENSP00000262305
  ensembl transcript: ENST00000262305
  gene symbol: RAB11FIP3
  hgvsc: ENST00000262305.4:c.1488G>C
  hgvsp: ENSP00000262305.4:p.Gln496His
  variant of: http://identifiers.org/hgnc/17224
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13714
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17048
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30821
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln496His
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-1538017-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1538017
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1538017
    reference: chr 17
allele count: 3
allele frequency: 2.698715411464143e-5
allele num: 111164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000263071
  ensembl transcript: ENST00000263071
  gene symbol: SCARF1
  hgvsc: ENST00000263071.4:c.*35G>T
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000461468
  ensembl transcript: ENST00000573852
  gene symbol: SCARF1
  hgvsc: ENST00000573852.1:c.*2415G>T
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000458174
  ensembl transcript: ENST00000571272
  gene symbol: SCARF1
  hgvsc: ENST00000571272.1:c.*781G>T
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000323964
  ensembl transcript: ENST00000348987
  gene symbol: SCARF1
  hgvsc: ENST00000348987.3:c.*35G>T
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074660
  ensembl transcript: ENST00000576012
  gene symbol: SCARF1
  hgvsc: ENST00000576012.1:n.2959G>T
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000411167
  ensembl transcript: ENST00000434376
  gene symbol: SCARF1
  hgvsc: ENST00000434376.2:c.*1429G>T
  variant of: http://identifiers.org/hgnc/16820
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

17-1538024-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1538024
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1538024
    reference: chr 17
allele count: 2
allele frequency: 1.795977011494253e-5
allele num: 111360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000411167
  ensembl transcript: ENST00000434376
  gene symbol: SCARF1
  hgvsc: ENST00000434376.2:c.*1422G>A
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074660
  ensembl transcript: ENST00000576012
  gene symbol: SCARF1
  hgvsc: ENST00000576012.1:n.2952G>A
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000458174
  ensembl transcript: ENST00000571272
  gene symbol: SCARF1
  hgvsc: ENST00000571272.1:c.*774G>A
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000323964
  ensembl transcript: ENST00000348987
  gene symbol: SCARF1
  hgvsc: ENST00000348987.3:c.*28G>A
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000461468
  ensembl transcript: ENST00000573852
  gene symbol: SCARF1
  hgvsc: ENST00000573852.1:c.*2408G>A
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000263071
  ensembl transcript: ENST00000263071
  gene symbol: SCARF1
  hgvsc: ENST00000263071.4:c.*28G>A
  variant of: http://identifiers.org/hgnc/16820
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3906
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-1538031-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1538031
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1538031
    reference: chr 17
allele count: 1
allele frequency: 8.951750067138126e-6
allele num: 111710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000323964
  ensembl transcript: ENST00000348987
  gene symbol: SCARF1
  hgvsc: ENST00000348987.3:c.*21G>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074660
  ensembl transcript: ENST00000576012
  gene symbol: SCARF1
  hgvsc: ENST00000576012.1:n.2945G>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000458174
  ensembl transcript: ENST00000571272
  gene symbol: SCARF1
  hgvsc: ENST00000571272.1:c.*767G>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000411167
  ensembl transcript: ENST00000434376
  gene symbol: SCARF1
  hgvsc: ENST00000434376.2:c.*1415G>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000263071
  ensembl transcript: ENST00000263071
  gene symbol: SCARF1
  hgvsc: ENST00000263071.4:c.*21G>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000461468
  ensembl transcript: ENST00000573852
  gene symbol: SCARF1
  hgvsc: ENST00000573852.1:c.*2401G>C
  variant of: http://identifiers.org/hgnc/16820
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18419
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12925
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-1538032-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1538032
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1538032
    reference: chr 17
allele count: 1
allele frequency: 8.948065428254411e-6
allele num: 111756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000458174
  ensembl transcript: ENST00000571272
  gene symbol: SCARF1
  hgvsc: ENST00000571272.1:c.*766T>G
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000461468
  ensembl transcript: ENST00000573852
  gene symbol: SCARF1
  hgvsc: ENST00000573852.1:c.*2400T>G
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000323964
  ensembl transcript: ENST00000348987
  gene symbol: SCARF1
  hgvsc: ENST00000348987.3:c.*20T>G
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000263071
  ensembl transcript: ENST00000263071
  gene symbol: SCARF1
  hgvsc: ENST00000263071.4:c.*20T>G
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000411167
  ensembl transcript: ENST00000434376
  gene symbol: SCARF1
  hgvsc: ENST00000434376.2:c.*1414T>G
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074660
  ensembl transcript: ENST00000576012
  gene symbol: SCARF1
  hgvsc: ENST00000576012.1:n.2944T>G
  variant of: http://identifiers.org/hgnc/16820
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4356
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

17-1538035-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1538035
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1538035
    reference: chr 17
allele count: 3
allele frequency: 2.679719879948549e-5
allele num: 111952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000323964
  ensembl transcript: ENST00000348987
  gene symbol: SCARF1
  hgvsc: ENST00000348987.3:c.*17G>A
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000461468
  ensembl transcript: ENST00000573852
  gene symbol: SCARF1
  hgvsc: ENST00000573852.1:c.*2397G>A
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000263071
  ensembl transcript: ENST00000263071
  gene symbol: SCARF1
  hgvsc: ENST00000263071.4:c.*17G>A
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000458174
  ensembl transcript: ENST00000571272
  gene symbol: SCARF1
  hgvsc: ENST00000571272.1:c.*763G>A
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000411167
  ensembl transcript: ENST00000434376
  gene symbol: SCARF1
  hgvsc: ENST00000434376.2:c.*1411G>A
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074660
  ensembl transcript: ENST00000576012
  gene symbol: SCARF1
  hgvsc: ENST00000576012.1:n.2941G>A
  variant of: http://identifiers.org/hgnc/16820
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6463
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

17-1538040-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1538040
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1538040
    reference: chr 17
allele count: 2
allele frequency: 1.779232794818874e-5
allele num: 112408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000323964
  ensembl transcript: ENST00000348987
  gene symbol: SCARF1
  hgvsc: ENST00000348987.3:c.*12T>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000411167
  ensembl transcript: ENST00000434376
  gene symbol: SCARF1
  hgvsc: ENST00000434376.2:c.*1406T>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000458174
  ensembl transcript: ENST00000571272
  gene symbol: SCARF1
  hgvsc: ENST00000571272.1:c.*758T>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000263071
  ensembl transcript: ENST00000263071
  gene symbol: SCARF1
  hgvsc: ENST00000263071.4:c.*12T>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000461468
  ensembl transcript: ENST00000573852
  gene symbol: SCARF1
  hgvsc: ENST00000573852.1:c.*2392T>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074660
  ensembl transcript: ENST00000576012
  gene symbol: SCARF1
  hgvsc: ENST00000576012.1:n.2936T>C
  variant of: http://identifiers.org/hgnc/16820
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18418
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6471
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-1538050-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1538050
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1538050
    reference: chr 17
allele count: 1
allele frequency: 8.838138334541212e-6
allele num: 113146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074660
  ensembl transcript: ENST00000576012
  gene symbol: SCARF1
  hgvsc: ENST00000576012.1:n.2926G>T
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000458174
  ensembl transcript: ENST00000571272
  gene symbol: SCARF1
  hgvsc: ENST00000571272.1:c.*748G>T
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000411167
  ensembl transcript: ENST00000434376
  gene symbol: SCARF1
  hgvsc: ENST00000434376.2:c.*1396G>T
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000323964
  ensembl transcript: ENST00000348987
  gene symbol: SCARF1
  hgvsc: ENST00000348987.3:c.*2G>T
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000263071
  ensembl transcript: ENST00000263071
  gene symbol: SCARF1
  hgvsc: ENST00000263071.4:c.*2G>T
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000461468
  ensembl transcript: ENST00000573852
  gene symbol: SCARF1
  hgvsc: ENST00000573852.1:c.*2382G>T
  variant of: http://identifiers.org/hgnc/16820
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18416
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-1538054-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1538054
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1538054
    reference: chr 17
allele count: 1
allele frequency: 8.791208791208792e-6
allele num: 113750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000323964
  ensembl transcript: ENST00000348987
  gene symbol: SCARF1
  hgvsc: ENST00000348987.3:c.2233T>C
  hgvsp: ENSP00000323964.4:p.Ter745ArgextTer1
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000458174
  ensembl transcript: ENST00000571272
  gene symbol: SCARF1
  hgvsc: ENST00000571272.1:c.*744T>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000461468
  ensembl transcript: ENST00000573852
  gene symbol: SCARF1
  hgvsc: ENST00000573852.1:c.*2378T>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000263071
  ensembl transcript: ENST00000263071
  gene symbol: SCARF1
  hgvsc: ENST00000263071.4:c.2491T>C
  hgvsp: ENSP00000263071.4:p.Ter831ArgextTer1
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074660
  ensembl transcript: ENST00000576012
  gene symbol: SCARF1
  hgvsc: ENST00000576012.1:n.2922T>C
  variant of: http://identifiers.org/hgnc/16820
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074660
  ensembl protein: ENSP00000411167
  ensembl transcript: ENST00000434376
  gene symbol: SCARF1
  hgvsc: ENST00000434376.2:c.*1392T>C
  variant of: http://identifiers.org/hgnc/16820
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18417
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ter831ArgextTer1
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-1538054-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1538054
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1538053
allele count: 1
allele frequency: 8.791208791208792e-6
allele num: 113750
alternate allele: A
canonical: true
consequence: frameshift
filter: PASS
hgvs: p.Ter831AspfsTer14
num of homozygotes: 0
reference allele: AG

GenotypeQuality
all individuals: 395
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.631578947368421e-4
allele num: 7600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.022e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.81e-2

DP
type: SiteQuality
SIO_000300: 3.25758e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e0

GenotypeQuality
all individuals: 369
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.415011037527594e-3
allele num: 906
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.26838e5

QD
type: SiteQuality
SIO_000300: 1.401e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 1.593e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.54e-2

GenotypeQuality
all individuals: 2918
bin: 9.75e1
variant carriers: 975

GenotypeQuality
all individuals: 367
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2812
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 469
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 346
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 886
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 170
allele frequency: 1.048088779284834e-1
allele num: 1622
num of homozygotes: 10

South Asian
type: Population
allele count: 358
allele frequency: 4.673629242819843e-2
allele num: 7660
num of homozygotes: 13

European (Non-Finnish)
type: Population
allele count: 231
allele frequency: 4.343738247461452e-2
allele num: 5318
num of homozygotes: 6

East Asian
type: Population
allele count: 158
allele frequency: 3.237704918032787e-1
allele num: 488
num of homozygotes: 27

Latino
type: Population
allele count: 7
allele frequency: 2.397260273972603e-2
allele num: 292
num of homozygotes: 0

Other
type: Population
allele count: 23
allele frequency: 1.116504854368932e-1
allele num: 206
num of homozygotes: 2

African
type: Population
allele count: 107
allele frequency: 1.181015452538631e-1
allele num: 906
num of homozygotes: 7

DP
type: SiteQuality
SIO_000300: 3.52008e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.01e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 7.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

QD
type: SiteQuality
SIO_000300: 1.376e1

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2323
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 973
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.305483028720627e-4
allele num: 7660
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.121e0

FS
type: SiteQuality
SIO_000300: 2.755e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e0

DP
type: SiteQuality
SIO_000300: 3.36409e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.742e0

QD
type: SiteQuality
SIO_000300: 8.539999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2322
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2069
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.88040616773223e-4
allele num: 5318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.635e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.076e0

DP
type: SiteQuality
SIO_000300: 3.3636e5

QD
type: SiteQuality
SIO_000300: 5.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 1116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8672
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.483511379470506e-4
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 6.74e-1

DP
type: SiteQuality
SIO_000300: 1.792625e6

QD
type: SiteQuality
SIO_000300: 1.322e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.851e0

GenotypeQuality
all individuals: 8651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3873
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

DP
type: SiteQuality
SIO_000300: 1.796088e6

VQSLOD
type: SiteQuality
SIO_000300: 7.47e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.44e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 6.73e0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

GenotypeQuality
all individuals: 550
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31797
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5364
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.9032006245121e-4
allele num: 10248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.802465e6

FS
type: SiteQuality
SIO_000300: 1.804e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.492e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-1

GenotypeQuality
all individuals: 33501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5362
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8711
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.748488984207447e-5
allele num: 10258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

FS
type: SiteQuality
SIO_000300: 1.245e0

DP
type: SiteQuality
SIO_000300: 1.816539e6

QD
type: SiteQuality
SIO_000300: 1.215e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.939e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-3

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8711
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5362
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2443
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3776
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65792
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.245e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

QD
type: SiteQuality
SIO_000300: 1.215e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.816539e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.939e0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33690
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5463
bin: 9.75e1
variant carriers: 129

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.803017166637767e-4
allele num: 11534
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 2.247191011235955e-3
allele num: 890
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African
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allele count: 118
allele frequency: 1.149425287356322e-2
allele num: 10266
num of homozygotes: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

VQSLOD
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ClippingRankSum
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SIO_000300: -2.1e-1

ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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MQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.820809e6

MQ
type: SiteQuality
SIO_000300: 5.754e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 890
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6580
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South Asian
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Latino
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allele frequency: 2.601005722212589e-4
allele num: 11534
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.519156564275514e-5
allele num: 65826
num of homozygotes: 0

African
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allele frequency: 0.0e0
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DP
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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FS
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SIO_000300: 5.93e-1

ReadPosRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65848
num of homozygotes: 0

East Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.683570684265369e-5
allele num: 11516
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South Asian
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Other
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allele frequency: 0.0e0
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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SIO_000300: 1.11e0

QD
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

African
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allele frequency: 1.168451801363194e-3
allele num: 10270
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Latino
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allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 894
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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VQSLOD
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MQRankSum
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.027e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.033796492931254e-5
allele num: 65924
num of homozygotes: 0

African
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Other
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num of homozygotes: 0

InbreedingCoeff
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
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QD
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DP
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.731413001167769e-5
allele num: 10276
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Other
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65936
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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FS
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QD
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InbreedingCoeff
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MQ
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SIO_000300: 5.722e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

DP
type: SiteQuality
SIO_000300: 1.821438e6

GenotypeQuality
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variant carriers: 19

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 896
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Latino
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allele count: 19
allele frequency: 1.645591546856054e-3
allele num: 11546
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65990
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MQ
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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QD
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DP
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VQSLOD
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SIO_000300: 8.110000000000001e-1

FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 896
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.723842862699339e-5
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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African
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East Asian
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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FS
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QD
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DP
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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ClippingRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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FS
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QD
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1396
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34163
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5357
bin: 9.75e1
variant carriers: 27

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.718172983479106e-5
allele num: 10290
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423654871546292e-4
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.877305630432807e-4
allele num: 66034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732201628269531e-4
allele num: 11546
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

DP
type: SiteQuality
SIO_000300: 1.825531e6

FS
type: SiteQuality
SIO_000300: 5.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.15e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.556e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

GenotypeQuality
all individuals: 5334
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3783
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.057118628668343e-5
allele num: 66038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.162e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

DP
type: SiteQuality
SIO_000300: 1.824164e6

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5331
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 148
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8813
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 8.285e0

QD
type: SiteQuality
SIO_000300: 1.266e1

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.481e0

DP
type: SiteQuality
SIO_000300: 1.824012e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3779
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8808
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.823939e6

VQSLOD
type: SiteQuality
SIO_000300: 7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 4.571e0

GenotypeQuality
all individuals: 301
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5331
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2970
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.824078e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.065e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 8.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

GenotypeQuality
all individuals: 1397
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34215
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3779
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029109744646049e-5
allele num: 66026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 1.318e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.724e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.21e-1

DP
type: SiteQuality
SIO_000300: 1.82381e6

VQSLOD
type: SiteQuality
SIO_000300: -1.508e-1

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34202
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73190162798753e-4
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.784e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

DP
type: SiteQuality
SIO_000300: 1.823654e6

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.26e-1

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2459
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8803
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5331
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514784294716432e-5
allele num: 66016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.014e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.336e0

QD
type: SiteQuality
SIO_000300: 3.236e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 4.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.52e-1

DP
type: SiteQuality
SIO_000300: 1.823743e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34190
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5327
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3772
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029568589432865e-5
allele num: 66016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.05e-1

DP
type: SiteQuality
SIO_000300: 1.823772e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.24e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 2964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8783
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.515518913676043e-5
allele num: 65984
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.652e0

MQ
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -7.0e-4

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.515610791148833e-5
allele num: 65980
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10268
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

MQRankSum
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InbreedingCoeff
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QD
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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SIO_000300: 1.821966e6

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.85e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65966
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.94e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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BaseQRankSum
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SIO_000300: 2.81e0

VQSLOD
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DP
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SIO_000300: 1.820111e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
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South Asian
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allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.515978412467406e-5
allele num: 65964
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

QD
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FS
type: SiteQuality
SIO_000300: 4.682e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.820138e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.518326197200206e-5
allele num: 65862
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10246
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

DP
type: SiteQuality
SIO_000300: 1.816193e6

QD
type: SiteQuality
SIO_000300: 1.05e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.747e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10208
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.521329033043267e-5
allele num: 65732
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.265e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

South Asian
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allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65728
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8634
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
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Other
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 886
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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allele frequency: 1.521699433927811e-5
allele num: 65716
num of homozygotes: 0

African
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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FS
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MQ
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
type: Population
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 1.526204938799182e-5
allele num: 65522
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South Asian
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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MQRankSum
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FS
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VQSLOD
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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African
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Other
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Latino
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European (Finnish)
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ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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DP
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QD
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FS
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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allele num: 8622
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 11450
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.108362348054486e-5
allele num: 65484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.551e1

VQSLOD
type: SiteQuality
SIO_000300: -2.214e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.424e0

FS
type: SiteQuality
SIO_000300: 6.957e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.788969e6

MQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
all individuals: 1766
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 565
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 226
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 264
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 9688
bin: 9.75e1
variant carriers: 7375

GenotypeQuality
all individuals: 2995
bin: 7.75e1
variant carriers: 13

GenotypeQuality
all individuals: 7468
bin: 6.75e1
variant carriers: 9

Other
type: Population
allele count: 68
allele frequency: 7.674943566591422e-2
allele num: 886
num of homozygotes: 1

Latino
type: Population
allele count: 351
allele frequency: 3.071403570178509e-2
allele num: 11428
num of homozygotes: 3

African
type: Population
allele count: 1356
allele frequency: 1.334908446544595e-1
allele num: 10158
num of homozygotes: 95

European (Finnish)
type: Population
allele count: 506
allele frequency: 7.794208256315466e-2
allele num: 6492
num of homozygotes: 21

South Asian
type: Population
allele count: 567
allele frequency: 3.449324735369266e-2
allele num: 16438
num of homozygotes: 22

East Asian
type: Population
allele count: 239
allele frequency: 2.777132233325587e-2
allele num: 8606
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 4695
allele frequency: 7.185491276400367e-2
allele num: 65340
num of homozygotes: 166

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.572e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.05e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 1.840216e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 792
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.265691651432054e-4
allele num: 16410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65164
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.98e-1

DP
type: SiteQuality
SIO_000300: 1.691675e6

QD
type: SiteQuality
SIO_000300: 1.464e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 518
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4591
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5506
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.67275162767515e-5
allele num: 64202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.049e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

DP
type: SiteQuality
SIO_000300: 1.516169e6

FS
type: SiteQuality
SIO_000300: 3.255e0

MQRankSum
type: SiteQuality
SIO_000300: -3.674e0

QD
type: SiteQuality
SIO_000300: 7.06e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

GenotypeQuality
all individuals: 547
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5235
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2767
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2431
bin: 2.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.059975520195838e-4
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.933357155619081e-5
allele num: 11194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.182312603452353e-4
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.443465122135482e-5
allele num: 63536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.122e0

DP
type: SiteQuality
SIO_000300: 1.505784e6

VQSLOD
type: SiteQuality
SIO_000300: -2.879e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.828e0

GenotypeQuality
all individuals: 2840
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.221e0

DP
type: SiteQuality
SIO_000300: 1.4961e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

GenotypeQuality
all individuals: 3134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26077
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 86
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.557705991176889e-5
allele num: 28108
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.808e0

DP
type: SiteQuality
SIO_000300: 6.75759e5

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

GenotypeQuality
all individuals: 260
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 929
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.33555703802535e-5
allele num: 29980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.2877e5

QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeQuality
all individuals: 511
bin: 4.25e1
variant carriers: 13

GenotypeQuality
all individuals: 437
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 14747
bin: 6.25e1
variant carriers: 39

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 58

GenotypeQuality
all individuals: 252
bin: 7.75e1
variant carriers: 34

GenotypeQuality
all individuals: 456
bin: 5.25e1
variant carriers: 23

GenotypeQuality
all individuals: 620
bin: 1.75e1
variant carriers: 14

European (Non-Finnish)
type: Population
allele count: 1696
allele frequency: 4.917082221964514e-2
allele num: 34492
num of homozygotes: 24

South Asian
type: Population
allele count: 136
allele frequency: 1.371520774505849e-2
allele num: 9916
num of homozygotes: 3

African
type: Population
allele count: 942
allele frequency: 1.459559962813759e-1
allele num: 6454
num of homozygotes: 52

Other
type: Population
allele count: 19
allele frequency: 4.357798165137615e-2
allele num: 436
num of homozygotes: 1

East Asian
type: Population
allele count: 35
allele frequency: 8.068234209313048e-3
allele num: 4338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 180
allele frequency: 8.057296329453895e-2
allele num: 2234
num of homozygotes: 1

Latino
type: Population
allele count: 236
allele frequency: 5.775819872736172e-2
allele num: 4086
num of homozygotes: 4

VQSLOD
type: SiteQuality
SIO_000300: 6.19e0

DP
type: SiteQuality
SIO_000300: 8.22604e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.77e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.039e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

QD
type: SiteQuality
SIO_000300: 1.414e1

GenotypeQuality
all individuals: 207
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 33462
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3308
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.621271076523995e-4
allele num: 12336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.169999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.022e1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

DP
type: SiteQuality
SIO_000300: 1.063714e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

GenotypeQuality
all individuals: 393
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 123
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40032
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.808187472877188e-5
allele num: 55304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.164852e6

MQRankSum
type: SiteQuality
SIO_000300: -1.024e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 2.5e0

FS
type: SiteQuality
SIO_000300: 1.792e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.464e0

GenotypeQuality
all individuals: 533
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.376807317792859e-5
allele num: 13556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 1.172055e6

FS
type: SiteQuality
SIO_000300: 2.384e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

QD
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -3.011e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.58e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 449
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.086418878219892e-5
allele num: 56446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.25163161711385e-5
allele num: 13790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4044
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

DP
type: SiteQuality
SIO_000300: 1.186231e6

VQSLOD
type: SiteQuality
SIO_000300: -1.518e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 5.601e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

QD
type: SiteQuality
SIO_000300: 1.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 440
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.392757660167131e-4
allele num: 57440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14066
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.666e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

DP
type: SiteQuality
SIO_000300: 1.203902e6

GenotypeQuality
all individuals: 840
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 658
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.749169144656288e-5
allele num: 57170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14026
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.39e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

MQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

FS
type: SiteQuality
SIO_000300: 1.913e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

VQSLOD
type: SiteQuality
SIO_000300: -7.171999999999999e-1

QD
type: SiteQuality
SIO_000300: 9.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.42e-1

DP
type: SiteQuality
SIO_000300: 1.197885e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.193317422434368e-4
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.764975819831268e-5
allele num: 56658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

QD
type: SiteQuality
SIO_000300: 7.55e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

FS
type: SiteQuality
SIO_000300: 6.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.03e-1

DP
type: SiteQuality
SIO_000300: 1.195777e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

GenotypeQuality
all individuals: 483
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
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GenotypeQuality
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 10846
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GenotypeQuality
all individuals: 803
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variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.287834455529312e-5
allele num: 56734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.047339757017176e-4
allele num: 9548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4122
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

FS
type: SiteQuality
SIO_000300: 1.3895e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

DP
type: SiteQuality
SIO_000300: 1.194895e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

QD
type: SiteQuality
SIO_000300: 1.241e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 418
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.256807708420612e-3
allele num: 9548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.282434145654318e-5
allele num: 56792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.425e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

FS
type: SiteQuality
SIO_000300: 1.745e0

QD
type: SiteQuality
SIO_000300: 9.91e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

DP
type: SiteQuality
SIO_000300: 1.195698e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4154
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East Asian
type: Population
allele count: 4
allele frequency: 5.344735435595938e-4
allele num: 7484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13994
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.9e0

FS
type: SiteQuality
SIO_000300: 5.334e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.089e0

MQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

DP
type: SiteQuality
SIO_000300: 1.196031e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.771479185119575e-5
allele num: 56450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9422
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4092
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13948
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

MQ
type: SiteQuality
SIO_000300: 5.923e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4052
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 694
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European (Non-Finnish)
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allele count: 3
allele frequency: 5.333143710445851e-5
allele num: 56252
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.199904007679386e-4
allele num: 8334
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Latino
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 2
allele frequency: 1.438021282714984e-4
allele num: 13908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 1.179113e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 3.308e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

ClippingRankSum
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SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.11e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 473
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GenotypeQuality
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30999
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.74423710208562e-4
allele num: 3644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.877e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

DP
type: SiteQuality
SIO_000300: 1.072526e6

VQSLOD
type: SiteQuality
SIO_000300: -1.65e0

FS
type: SiteQuality
SIO_000300: 1.921e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

QD
type: SiteQuality
SIO_000300: 5.96e0

MQRankSum
type: SiteQuality
SIO_000300: -8.62e-1

GenotypeQuality
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21607
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 7.5e0
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GenotypeQuality
all individuals: 25
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 214
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.991714467813894e-5
allele num: 50208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12964
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.041e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 1.027182e6

QD
type: SiteQuality
SIO_000300: 4.99e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 30445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2368
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variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.27541640120142e-5
allele num: 43948
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.411e0

DP
type: SiteQuality
SIO_000300: 8.66966e5

QD
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 2.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

GenotypeQuality
all individuals: 2419
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17307
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.586945552956287e-5
allele num: 43602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

FS
type: SiteQuality
SIO_000300: 2.386e0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.37e1

DP
type: SiteQuality
SIO_000300: 8.59328e5

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18423
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3907
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.955416503715291e-4
allele num: 10228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.862e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.981e0

DP
type: SiteQuality
SIO_000300: 2.209883e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

VQSLOD
type: SiteQuality
SIO_000300: -1.975e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.376e1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3488
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4357
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6459
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18421
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12897
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.740947075208914e-4
allele num: 11488
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.591e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-2

FS
type: SiteQuality
SIO_000300: 5.54e-1

DP
type: SiteQuality
SIO_000300: 2.212746e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.138e1

GenotypeQuality
all individuals: 2893
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.767532721234616e-5
allele num: 10238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 1.2668e1

MQRankSum
type: SiteQuality
SIO_000300: -1.143e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.864e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.561e0

DP
type: SiteQuality
SIO_000300: 2.216543e6

GenotypeQuality
all individuals: 2981
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18419
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12934
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variant carriers: 0

GenotypeQuality
all individuals: 6461
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554678026180778e-5
allele num: 64322
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

DP
type: SiteQuality
SIO_000300: 2.21693e6

FS
type: SiteQuality
SIO_000300: 1.792e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.363e0

QD
type: SiteQuality
SIO_000300: 1.18e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.53e0

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12957
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 223
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variant carriers: 0

GenotypeQuality
all individuals: 18419
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.610966057441253e-4
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.144e1

DP
type: SiteQuality
SIO_000300: 2.219276e6

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.46e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 3250
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GenotypeQuality
all individuals: 2519
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.700191404210893e-5
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550579916888916e-5
allele num: 64492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

FS
type: SiteQuality
SIO_000300: 5.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 2.222551e6

QD
type: SiteQuality
SIO_000300: 1.207e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 3427
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GenotypeQuality
all individuals: 3251
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GenotypeQuality
all individuals: 152
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.099e0

FS
type: SiteQuality
SIO_000300: 5.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 2.228861e6

MQRankSum
type: SiteQuality
SIO_000300: -1.112e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.325e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3912
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.976660682226212e-5
allele num: 11140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 2.233191e6

QD
type: SiteQuality
SIO_000300: 1.536e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

MQ
type: SiteQuality
SIO_000300: 6.019e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1