11-118065110-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065110
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065110
    reference: chr 11
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5180G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1082G>A
  hgvsp: ENSP00000436117.1:p.Arg361Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1085G>A
  hgvsp: ENSP00000292067.7:p.Arg362Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.998G>A
  hgvsp: ENSP00000431218.1:p.Arg333Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2306G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1115G>A
  hgvsp: ENSP00000348635.5:p.Arg372Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*110G>A
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg372Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-118065117-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065117
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065117
    reference: chr 11
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.991T>C
  hgvsp: ENSP00000431218.1:p.Ser331Pro
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*103T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1075T>C
  hgvsp: ENSP00000436117.1:p.Ser359Pro
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1078T>C
  hgvsp: ENSP00000292067.7:p.Ser360Pro
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2299T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1108T>C
  hgvsp: ENSP00000348635.5:p.Ser370Pro
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5173T>C
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5710
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser370Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

11-118065127-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065127
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065127
    reference: chr 11
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*93A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1065A>G
  hgvsp: ENST00000533261.1:c.1065A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1068A>G
  hgvsp: ENST00000292067.7:c.1068A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.981A>G
  hgvsp: ENST00000526620.1:c.981A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5163A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1098A>G
  hgvsp: ENST00000356289.5:c.1098A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2289A>G
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro366Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

11-118065137-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065137
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065137
    reference: chr 11
allele count: 2
allele frequency: 1.661267547138467e-5
allele num: 120390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-5C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-5C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-5C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-5C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-5C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-5C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-5C>G
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5849
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1093-5C>G
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

11-118065138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065138
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065138
    reference: chr 11
allele count: 1
allele frequency: 8.314210648840998e-6
allele num: 120276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-6C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-6C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-6C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-6C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-6C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-6C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-6C>T
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5847
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1093-6C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

11-118065139-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065139
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065139
    reference: chr 11
allele count: 1
allele frequency: 8.331805835596807e-6
allele num: 120022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-7C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-7C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-7C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-7C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-7C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-7C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-7C>T
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5445
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1093-7C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

11-118065149-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065149
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065149
    reference: chr 11
allele count: 1
allele frequency: 8.406610958858046e-6
allele num: 118954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-17C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-17C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-17C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-17C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-17C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-17C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-17C>T
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

11-118065149-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065149
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065149
    reference: chr 11
allele count: 2
allele frequency: 1.681322191771609e-5
allele num: 118954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-17C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-17C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-17C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-17C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-17C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-17C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-17C>G
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19910
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4824
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/11-118065152-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065152
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065152
    reference: chr 11
allele count: 1
allele frequency: 8.423464402439436e-6
allele num: 118716
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-20T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-20T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-20T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-20T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-20T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-20T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-20T>G
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19445
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5850
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

11-118065152-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065152
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065152
    reference: chr 11
allele count: 5
allele frequency: 4.211732201219718e-5
allele num: 118716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-20T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-20T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-20T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-20T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-20T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-20T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-20T>C
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35272
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

11-118065153-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065153
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065153
    reference: chr 11
allele count: 2
allele frequency: 1.687735228097416e-5
allele num: 118502
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-21C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-21C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-21C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-21C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-21C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-21C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-21C>T
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4547
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34475
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

11-118065153-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065153
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065153
    reference: chr 11
allele count: 14
allele frequency: 1.181414659668191e-4
allele num: 118502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-21C>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-21C>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-21C>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-21C>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-21C>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-21C>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-21C>A
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19193
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4538
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34475
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

11-118065164-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065164
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065164
    reference: chr 11
allele count: 1
allele frequency: 8.510638297872341e-6
allele num: 117500
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-32A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-32A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-32A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-32A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-32A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-32A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-32A>G
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7377
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5839
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-118065167-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065167
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065167
    reference: chr 11
allele count: 1
allele frequency: 8.549346829902196e-6
allele num: 116968
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-35A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-35A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-35A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-35A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-35A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-35A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-35A>C
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12050
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7636
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: T
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-118065169-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118065169
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118065170
    reference: chr 11
allele count: 1
allele frequency: 8.590770076629668e-6
allele num: 116404
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2284-38dupA
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*88-38dupA
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1060-38dupA
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1063-38dupA
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.976-38dupA
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5158-38dupA
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1093-38dupA
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5836
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6504
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

11-118067399-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067399
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067399
    reference: chr 11
allele count: 2
allele frequency: 1.64774506088418e-5
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1092+51T>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2283+51T>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1059+51T>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1062+51T>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.975+51T>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5157+51T>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*87+51T>A
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18838
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50489
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

11-118067403-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067403
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067403
    reference: chr 11
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1062+47G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5157+47G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*87+47G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1059+47G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2283+47G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1092+47G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.975+47G>C
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18838
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

11-118067411-T-TCTGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067411
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067415
    reference: chr 11
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: TCTGA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5157+35_5157+38dupTCAG
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2283+35_2283+38dupTCAG
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*87+35_*87+38dupTCAG
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1062+35_1062+38dupTCAG
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1059+35_1059+38dupTCAG
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1092+35_1092+38dupTCAG
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.975+35_975+38dupTCAG
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18839
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

11-118067417-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067417
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067417
    reference: chr 11
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5157+33T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1059+33T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2283+33T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1092+33T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1062+33T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.975+33T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*87+33T>C
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18839
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

11-118067425-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067425
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067425
    reference: chr 11
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.975+25G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5157+25G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*87+25G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1062+25G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2283+25G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1092+25G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1059+25G>C
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18839
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-118067425-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067425
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067425
    reference: chr 11
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2283+25G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1059+25G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*87+25G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1092+25G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1062+25G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.975+25G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5157+25G>A
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18839
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50514
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

11-118067426-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067426
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067426
    reference: chr 11
allele count: 70939
allele frequency: 5.84379530776328e-1
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5157+24T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*87+24T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1062+24T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2283+24T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1092+24T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.975+24T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1059+24T>C
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 4.25e1
  variant carriers: 785
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 4.75e1
  variant carriers: 911
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 8.25e1
  variant carriers: 1343
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 5.25e1
  variant carriers: 959
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 5.75e1
  variant carriers: 917
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 6.25e1
  variant carriers: 894
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 3.25e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.75e1
  variant carriers: 857
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 8.75e1
  variant carriers: 1635
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 9.25e1
  variant carriers: 2054
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.25e1
  variant carriers: 907
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 525
genotype depth: GenotypeDepth
  all individuals: 36592
  bin: 9.75e1
  variant carriers: 36237
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 1167
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 2.75e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 9.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 8.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 5
num of homozygotes: 21194
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

11-118067430-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067430
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067430
    reference: chr 11
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1062+20C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1059+20C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5157+20C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*87+20C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2283+20C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.975+20C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1092+20C>G
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6043
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

11-118067434-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067434
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067434
    reference: chr 11
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5157+16G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1062+16G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2283+16G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1092+16G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1059+16G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.975+16G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*87+16G>A
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

11-118067437-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067437
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067437
    reference: chr 11
allele count: 24
allele frequency: 1.976772918211021e-4
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1092+13C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*87+13C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1059+13C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2283+13C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5157+13C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1062+13C>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.975+13C>G
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5029
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4523
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6046
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

11-118067462-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067462
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067462
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5145C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1047C>T
  hgvsp: ENST00000533261.1:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*75C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1080C>T
  hgvsp: ENST00000356289.5:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1050C>T
  hgvsp: ENST00000292067.7:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.963C>T
  hgvsp: ENST00000526620.1:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2271C>T
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22884
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6050
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5040
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr360Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

11-118067470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067470
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067470
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2263G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.955G>A
  hgvsp: ENSP00000431218.1:p.Glu319Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*67G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5137G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1072G>A
  hgvsp: ENSP00000348635.5:p.Glu358Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1039G>A
  hgvsp: ENSP00000436117.1:p.Glu347Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1042G>A
  hgvsp: ENSP00000292067.7:p.Glu348Lys
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5040
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6049
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu358Lys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

11-118067479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067479
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067479
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*58G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1063G>A
  hgvsp: ENSP00000348635.5:p.Glu355Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1030G>A
  hgvsp: ENSP00000436117.1:p.Glu344Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2254G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.946G>A
  hgvsp: ENSP00000431218.1:p.Glu316Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5128G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1033G>A
  hgvsp: ENSP00000292067.7:p.Glu345Lys
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu355Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

11-118067489-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067489
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067489
    reference: chr 11
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1023A>C
  hgvsp: ENSP00000292067.7:p.Glu341Asp
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2244A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1020A>C
  hgvsp: ENSP00000436117.1:p.Glu340Asp
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.936A>C
  hgvsp: ENSP00000431218.1:p.Glu312Asp
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5118A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1053A>C
  hgvsp: ENSP00000348635.5:p.Glu351Asp
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*48A>C
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6050
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22883
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5030
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu351Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

11-118067494-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067494
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067494
    reference: chr 11
allele count: 12
allele frequency: 9.883701775771753e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1018G>A
  hgvsp: ENSP00000292067.7:p.Glu340Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5113G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1015G>A
  hgvsp: ENSP00000436117.1:p.Glu339Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.931G>A
  hgvsp: ENSP00000431218.1:p.Glu311Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*43G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1048G>A
  hgvsp: ENSP00000348635.5:p.Glu350Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2239G>A
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 6050
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22881
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu350Lys
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

11-118067497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067497
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067497
    reference: chr 11
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1012G>A
  hgvsp: ENSP00000436117.1:p.Glu338Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5110G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1045G>A
  hgvsp: ENSP00000348635.5:p.Glu349Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1015G>A
  hgvsp: ENSP00000292067.7:p.Glu339Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2236G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.928G>A
  hgvsp: ENSP00000431218.1:p.Glu310Lys
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4528
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu349Lys
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

11-118067498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067498
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067498
    reference: chr 11
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1044C>T
  hgvsp: ENST00000356289.5:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.927C>T
  hgvsp: ENST00000526620.1:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1011C>T
  hgvsp: ENST00000533261.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1014C>T
  hgvsp: ENST00000292067.7:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2235C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5109C>T
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile348Ile
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

11-118067498-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067498
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067498
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1011C>A
  hgvsp: ENST00000533261.1:c.1011C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1014C>A
  hgvsp: ENST00000292067.7:c.1014C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5109C>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.927C>A
  hgvsp: ENST00000526620.1:c.927C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1044C>A
  hgvsp: ENST00000356289.5:c.1044C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*39C>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2235C>A
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6053
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile348Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-118067503-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067503
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067503
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*34G>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1006G>T
  hgvsp: ENSP00000436117.1:p.Val336Leu
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1039G>T
  hgvsp: ENSP00000348635.5:p.Val347Leu
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1009G>T
  hgvsp: ENSP00000292067.7:p.Val337Leu
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.922G>T
  hgvsp: ENSP00000431218.1:p.Val308Leu
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2230G>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5104G>T
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5031
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6054
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val347Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

11-118067508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067508
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067508
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1034G>A
  hgvsp: ENSP00000348635.5:p.Arg345Gln
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1004G>A
  hgvsp: ENSP00000292067.7:p.Arg335Gln
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.917G>A
  hgvsp: ENSP00000431218.1:p.Arg306Gln
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5099G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1001G>A
  hgvsp: ENSP00000436117.1:p.Arg334Gln
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2225G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*29G>A
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5041
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4528
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg345Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

11-118067509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067509
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067509
    reference: chr 11
allele count: 15
allele frequency: 1.235462721971469e-4
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.1003C>T
  hgvsp: ENSP00000292067.7:p.Arg335Trp
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1033C>T
  hgvsp: ENSP00000348635.5:p.Arg345Trp
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2224C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.916C>T
  hgvsp: ENSP00000431218.1:p.Arg306Trp
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.1000C>T
  hgvsp: ENSP00000436117.1:p.Arg334Trp
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5098C>T
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6054
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5041
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg345Trp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD

11-118067518-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067518
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067518
    reference: chr 11
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.991A>G
  hgvsp: ENSP00000436117.1:p.Ile331Val
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.907A>G
  hgvsp: ENSP00000431218.1:p.Ile303Val
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2215A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.994A>G
  hgvsp: ENSP00000292067.7:p.Ile332Val
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1024A>G
  hgvsp: ENSP00000348635.5:p.Ile342Val
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*19A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5089A>G
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22855
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5043
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile342Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-118067522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067522
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067522
    reference: chr 11
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1020C>T
  hgvsp: ENST00000356289.5:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5085C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.987C>T
  hgvsp: ENST00000533261.1:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2211C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.903C>T
  hgvsp: ENST00000526620.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.990C>T
  hgvsp: ENST00000292067.7:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22851
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11849
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6058
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5030
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser340Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

11-118067537-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067537
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067537
    reference: chr 11
allele count: 102
allele frequency: 8.402253781014202e-4
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*1-1G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1006-1G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.973-1G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.889-1G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2197-1G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.976-1G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5070G>C
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 9.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22844
  bin: 9.75e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1006-1G>C
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-118067539-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067539
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067539
    reference: chr 11
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*1-3T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2197-3T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.976-3T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5068T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.973-3T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1006-3T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.889-3T>C
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6064
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1006-3T>C
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

11-118067544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067544
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067544
    reference: chr 11
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.889-8C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5063C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*1-8C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2197-8C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.973-8C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1006-8C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.976-8C>T
  variant of: http://identifiers.org/hgnc/19084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22776
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2821
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1006-8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

11-118067547-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067547
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067547
    reference: chr 11
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*1-11T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.889-11T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2197-11T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.973-11T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.976-11T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1006-11T>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5060T>C
  variant of: http://identifiers.org/hgnc/19084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4528
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

11-118067556-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067556
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067556
    reference: chr 11
allele count: 74
allele frequency: 6.100174761763445e-4
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.976-20G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*1-20G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1006-20G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.889-20G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.973-20G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5051G>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2197-20G>C
  variant of: http://identifiers.org/hgnc/19084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5025
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

11-118067573-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067573
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067573
    reference: chr 11
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.889-37A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*1-37A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.976-37A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5034A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.973-37A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1006-37A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2197-37A>G
  variant of: http://identifiers.org/hgnc/19084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4961
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4926
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

11-118067581-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067581
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067581
    reference: chr 11
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2197-45A>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5026A>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*1-45A>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1006-45A>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.976-45A>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.973-45A>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.889-45A>T
  variant of: http://identifiers.org/hgnc/19084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10432
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8260
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4871
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

11-118067583-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118067583
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118067583
    reference: chr 11
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*1-47A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2197-47A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.973-47A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1006-47A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.5024A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.889-47A>C
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.976-47A>C
  variant of: http://identifiers.org/hgnc/19084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4961
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7321
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

11-118068635-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118068635
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118068635
    reference: chr 11
allele count: 470
allele frequency: 3.901710111240246e-3
allele num: 120460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.975+78A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.972+78A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2196+78A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.3972A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000529164
  gene symbol: AMICA1
  hgvsc: ENST00000529164.1:n.1174A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1005+78A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.888+78A>G
  variant of: http://identifiers.org/hgnc/19084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9620
  bin: 2.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 10160
  bin: 3.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 3.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6667
  bin: 2.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6680
  bin: 4.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 4.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25330
  bin: 9.75e1
  variant carriers: 458
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 7
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/11-118068639-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118068639
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118068639
    reference: chr 11
allele count: 2
allele frequency: 1.658154805332626e-5
allele num: 120616
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1005+74T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.975+74T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2196+74T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.3968T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.888+74T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.972+74T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000529164
  gene symbol: AMICA1
  hgvsc: ENST00000529164.1:n.1170T>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*44T>G
  variant of: http://identifiers.org/hgnc/19084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10298
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25176
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

11-118068642-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118068642
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118068642
    reference: chr 11
allele count: 3
allele frequency: 2.486737400530504e-5
allele num: 120640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.888+71A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.972+71A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1005+71A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*41A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.3965A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2196+71A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000529164
  gene symbol: AMICA1
  hgvsc: ENST00000529164.1:n.1167A>G
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.975+71A>G
  variant of: http://identifiers.org/hgnc/19084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9805
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3861
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

11-118068644-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118068644
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118068644
    reference: chr 11
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000529164
  gene symbol: AMICA1
  hgvsc: ENST00000529164.1:n.1165C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.972+69C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1005+69C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.888+69C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2196+69C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.3963C>T
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.975+69C>T
  variant of: http://identifiers.org/hgnc/19084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3865
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25189
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

11-118068648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118068648
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118068648
    reference: chr 11
allele count: 1
allele frequency: 8.285827919925758e-6
allele num: 120688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000529164
  gene symbol: AMICA1
  hgvsc: ENST00000529164.1:n.1161G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1005+65G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*35G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.888+65G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.972+65G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.3959G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2196+65G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.975+65G>A
  variant of: http://identifiers.org/hgnc/19084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3880
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4739
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

11-118068649-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118068649
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118068649
    reference: chr 11
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431614
  ensembl transcript: ENST00000526595
  gene symbol: AMICA1
  hgvsc: ENST00000526595.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000431218
  ensembl transcript: ENST00000526620
  gene symbol: AMICA1
  hgvsc: ENST00000526620.1:c.888+64G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000529164
  gene symbol: AMICA1
  hgvsc: ENST00000529164.1:n.1160G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000292067
  ensembl transcript: ENST00000292067
  gene symbol: AMICA1
  hgvsc: ENST00000292067.7:c.975+64G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000534294
  gene symbol: AMICA1
  hgvsc: ENST00000534294.1:n.3958G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000348635
  ensembl transcript: ENST00000356289
  gene symbol: AMICA1
  hgvsc: ENST00000356289.5:c.1005+64G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl transcript: ENST00000531530
  gene symbol: AMICA1
  hgvsc: ENST00000531530.1:n.2196+64G>A
  variant of: http://identifiers.org/hgnc/19084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160593
  ensembl protein: ENSP00000436117
  ensembl transcript: ENST00000533261
  gene symbol: AMICA1
  hgvsc: ENST00000533261.1:c.972+64G>A
  variant of: http://identifiers.org/hgnc/19084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

16-450253-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450253
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450254
    reference: chr 16
allele count: 1
allele frequency: 8.446231291597689e-6
allele num: 118396
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.268dupC
  hgvsp: ENSP00000380834.1:p.Gln90ProfsTer12
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*66dupC
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.478dupC
  hgvsp: ENSP00000219479.2:p.Gln160ProfsTer12
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.502dupC
  hgvsp: ENSP00000372398.4:p.Gln168ProfsTer12
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1275dupC
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.478dupC
  hgvsp: ENSP00000395605.1:p.Gln160ProfsTer12
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.268dupC
  hgvsp: ENSP00000389048.1:p.Gln90ProfsTer12
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*530dupC
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1368dupC
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln160ProfsTer12
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

16-450259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450259
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450259
    reference: chr 16
allele count: 64
allele frequency: 5.405496714471528e-4
allele num: 118398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1371C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1278C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.271C>T
  hgvsp: ENSP00000389048.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.505C>T
  hgvsp: ENSP00000372398.4:p.Arg169Trp
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.271C>T
  hgvsp: ENSP00000380834.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.481C>T
  hgvsp: ENSP00000219479.2:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.481C>T
  hgvsp: ENSP00000395605.1:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*69C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*533C>T
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12613
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg161Trp
num of homozygotes: 1
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

16-450260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450260
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450260
    reference: chr 16
allele count: 2
allele frequency: 1.687991627561527e-5
allele num: 118484
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.482G>A
  hgvsp: ENSP00000219479.2:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*534G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1279G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1372G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.272G>A
  hgvsp: ENSP00000389048.1:p.Arg91Gln
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*70G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.482G>A
  hgvsp: ENSP00000395605.1:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.272G>A
  hgvsp: ENSP00000380834.1:p.Arg91Gln
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.506G>A
  hgvsp: ENSP00000372398.4:p.Arg169Gln
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg161Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

16-450267-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450267
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450267
    reference: chr 16
allele count: 1
allele frequency: 8.433836552247617e-6
allele num: 118570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1286C>G
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1379C>G
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*77C>G
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.279C>G
  hgvsp: ENSP00000389048.1:p.Ile93Met
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.489C>G
  hgvsp: ENSP00000395605.1:p.Ile163Met
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.279C>G
  hgvsp: ENSP00000380834.1:p.Ile93Met
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*541C>G
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.489C>G
  hgvsp: ENSP00000219479.2:p.Ile163Met
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.513C>G
  hgvsp: ENSP00000372398.4:p.Ile171Met
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile163Met
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

16-450268-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450268
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450268
    reference: chr 16
allele count: 1
allele frequency: 8.433836552247617e-6
allele num: 118570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*542C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.514C>T
  hgvsp: ENSP00000372398.4:p.Gln172Ter
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.280C>T
  hgvsp: ENSP00000380834.1:p.Gln94Ter
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.280C>T
  hgvsp: ENSP00000389048.1:p.Gln94Ter
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1287C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*78C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.490C>T
  hgvsp: ENSP00000219479.2:p.Gln164Ter
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.490C>T
  hgvsp: ENSP00000395605.1:p.Gln164Ter
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1380C>T
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln164Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS

16-450272-TGTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450272
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450269
    reference: chr 16
allele count: 1
allele frequency: 8.428860418071477e-6
allele num: 118640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*549_*551delGGT
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.521_523delGGT
  hgvsp: ENSP00000372398.4:p.Trp174del
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.497_499delGGT
  hgvsp: ENSP00000219479.2:p.Trp166del
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.287_289delGGT
  hgvsp: ENSP00000389048.1:p.Trp96del
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1294_1296delGGT
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.497_499delGGT
  hgvsp: ENSP00000395605.1:p.Trp166del
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.287_289delGGT
  hgvsp: ENSP00000380834.1:p.Trp96del
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1387_1389delGGT
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*85_*87delGGT
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Trp166del
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: TGTG
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

16-450282-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450282
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450282
    reference: chr 16
allele count: 2
allele frequency: 1.685402726981612e-5
allele num: 118666
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1394G>C
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.504G>C
  hgvsp: ENSP00000395605.1:p.Gln168His
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.528G>C
  hgvsp: ENSP00000372398.4:p.Gln176His
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*556G>C
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1301G>C
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*92G>C
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.294G>C
  hgvsp: ENSP00000389048.1:p.Gln98His
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.294G>C
  hgvsp: ENSP00000380834.1:p.Gln98His
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.504G>C
  hgvsp: ENSP00000219479.2:p.Gln168His
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln168His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

16-450284-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450284
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450284
    reference: chr 16
allele count: 1
allele frequency: 8.427581789681268e-6
allele num: 118658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.296G>T
  hgvsp: ENSP00000380834.1:p.Ser99Ile
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*558G>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*94G>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.296G>T
  hgvsp: ENSP00000389048.1:p.Ser99Ile
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.506G>T
  hgvsp: ENSP00000395605.1:p.Ser169Ile
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.530G>T
  hgvsp: ENSP00000372398.4:p.Ser177Ile
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1303G>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1396G>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.506G>T
  hgvsp: ENSP00000219479.2:p.Ser169Ile
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser169Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

16-450285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450285
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450285
    reference: chr 16
allele count: 1
allele frequency: 8.428860418071477e-6
allele num: 118640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.507C>T
  hgvsp: ENST00000444498.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.531C>T
  hgvsp: ENST00000382940.4:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*95C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1304C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.507C>T
  hgvsp: ENST00000219479.2:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.297C>T
  hgvsp: ENST00000450036.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.297C>T
  hgvsp: ENST00000397722.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*559C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1397C>T
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32728
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser169Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

16-450285-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450285
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450285
    reference: chr 16
allele count: 1
allele frequency: 8.428860418071477e-6
allele num: 118640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1304C>G
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*95C>G
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.507C>G
  hgvsp: ENSP00000219479.2:p.Ser169Arg
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.297C>G
  hgvsp: ENSP00000380834.1:p.Ser99Arg
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.297C>G
  hgvsp: ENSP00000389048.1:p.Ser99Arg
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*559C>G
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.507C>G
  hgvsp: ENSP00000395605.1:p.Ser169Arg
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.531C>G
  hgvsp: ENSP00000372398.4:p.Ser177Arg
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1397C>G
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser169Arg
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

16-450287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450287
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450287
    reference: chr 16
allele count: 17
allele frequency: 1.433244528378242e-4
allele num: 118612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*97G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1399G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.509G>A
  hgvsp: ENSP00000395605.1:p.Ser170Asn
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.533G>A
  hgvsp: ENSP00000372398.4:p.Ser178Asn
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*561G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.299G>A
  hgvsp: ENSP00000380834.1:p.Ser100Asn
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.509G>A
  hgvsp: ENSP00000219479.2:p.Ser170Asn
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.299G>A
  hgvsp: ENSP00000389048.1:p.Ser100Asn
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1306G>A
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12552
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser170Asn
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-450292-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450292
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450292
    reference: chr 16
allele count: 2
allele frequency: 1.686084742619164e-5
allele num: 118618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*102C>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.304C>A
  hgvsp: ENSP00000380834.1:p.Leu102Met
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.538C>A
  hgvsp: ENSP00000372398.4:p.Leu180Met
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1311C>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1404C>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.514C>A
  hgvsp: ENSP00000219479.2:p.Leu172Met
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.514C>A
  hgvsp: ENSP00000395605.1:p.Leu172Met
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.304C>A
  hgvsp: ENSP00000389048.1:p.Leu102Met
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*566C>A
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32733
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu172Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

16-450305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450305
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450305
    reference: chr 16
allele count: 1
allele frequency: 8.425309630128907e-6
allele num: 118690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*115C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*579C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1417C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.551C>T
  hgvsp: ENSP00000372398.4:p.Ala184Val
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.317C>T
  hgvsp: ENSP00000389048.1:p.Ala106Val
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.516+11C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1324C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.317C>T
  hgvsp: ENSP00000380834.1:p.Ala106Val
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.527C>T
  hgvsp: ENSP00000219479.2:p.Ala176Val
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala176Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

16-450308-A-ATG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450308
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450310
    reference: chr 16
allele count: 1
allele frequency: 8.422045546422314e-6
allele num: 118736
alternate allele: ATG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.320_321insTG
  hgvsp: ENSP00000380834.1:p.Gly108AlafsTer99
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.530_531insTG
  hgvsp: ENSP00000219479.2:p.Gly178AlafsTer99
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1420_1421insTG
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.320_321insTG
  hgvsp: ENSP00000389048.1:p.Gly108AlafsTer?
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*118_*119insTG
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1327_1328insTG
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.554_555insTG
  hgvsp: ENSP00000372398.4:p.Gly186AlafsTer?
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.516+14_516+15insTG
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*582_*583insTG
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32748
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly178AlafsTer99
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS

16-450309-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450309
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450309
    reference: chr 16
allele count: 1
allele frequency: 8.399126490844953e-6
allele num: 119060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1328C>G
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1421C>G
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.321C>G
  hgvsp: ENSP00000380834.1:p.Asp107Glu
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.321C>G
  hgvsp: ENSP00000389048.1:p.Asp107Glu
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.531C>G
  hgvsp: ENSP00000219479.2:p.Asp177Glu
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.555C>G
  hgvsp: ENSP00000372398.4:p.Asp185Glu
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*583C>G
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*119C>G
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.516+15C>G
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp177Glu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-450309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450309
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450309
    reference: chr 16
allele count: 49120
allele frequency: 4.12565093230304e-1
allele num: 119060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1328C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*583C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.321C>T
  hgvsp: ENST00000397722.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.555C>T
  hgvsp: ENST00000382940.4:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*119C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.531C>T
  hgvsp: ENST00000219479.2:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1421C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.516+15C>T
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.321C>T
  hgvsp: ENST00000450036.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 8.75e1
  variant carriers: 2250
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 5.75e1
  variant carriers: 2227
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 7.25e1
  variant carriers: 2717
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 4.25e1
  variant carriers: 1594
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 2.75e1
  variant carriers: 1116
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 384
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.75e1
  variant carriers: 609
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.75e1
  variant carriers: 1726
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 3.75e1
  variant carriers: 1507
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 6.75e1
  variant carriers: 2598
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 6.25e1
  variant carriers: 2461
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.5e0
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 9.75e1
  variant carriers: 8498
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 7.75e1
  variant carriers: 2661
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 3.25e1
  variant carriers: 1329
genotype depth: GenotypeDepth
  all individuals: 10925
  bin: 2.25e1
  variant carriers: 819
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 8.25e1
  variant carriers: 2579
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 5.25e1
  variant carriers: 1899
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 9.25e1
  variant carriers: 1979
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 6.75e1
  variant carriers: 142
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 9.25e1
  variant carriers: 241
hgvs: p.Asp177Asp
num of homozygotes: 10209
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

16-450310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450310
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450310
    reference: chr 16
allele count: 9
allele frequency: 7.588660854314575e-5
allele num: 118598
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1329G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*584G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.516+16G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.556G>A
  hgvsp: ENSP00000372398.4:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1422G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.322G>A
  hgvsp: ENSP00000380834.1:p.Gly108Arg
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*120G>A
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.322G>A
  hgvsp: ENSP00000389048.1:p.Gly108Arg
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.532G>A
  hgvsp: ENSP00000219479.2:p.Gly178Arg
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9778
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15122
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly178Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-450310-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450310
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450310
    reference: chr 16
allele count: 1
allele frequency: 8.431845393682861e-6
allele num: 118598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1422G>C
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.516+16G>C
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*584G>C
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.322G>C
  hgvsp: ENSP00000380834.1:p.Gly108Arg
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*120G>C
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.532G>C
  hgvsp: ENSP00000219479.2:p.Gly178Arg
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1329G>C
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.322G>C
  hgvsp: ENSP00000389048.1:p.Gly108Arg
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.556G>C
  hgvsp: ENSP00000372398.4:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly178Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/16-450316-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 450316
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 450315
    reference: chr 16
allele count: 1
allele frequency: 8.435686327439601e-6
allele num: 118544
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000219479
  ensembl transcript: ENST00000219479
  gene symbol: NME4
  hgvsc: ENST00000219479.2:c.539delA
  hgvsp: ENSP00000219479.2:p.Gln180ArgfsTer96
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000380834
  ensembl transcript: ENST00000397722
  gene symbol: NME4
  hgvsc: ENST00000397722.1:c.329delA
  hgvsp: ENSP00000380834.1:p.Gln110ArgfsTer96
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000412039
  ensembl transcript: ENST00000448828
  gene symbol: NME4
  hgvsc: ENST00000448828.1:c.*591delA
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000372398
  ensembl transcript: ENST00000382940
  gene symbol: NME4
  hgvsc: ENST00000382940.4:c.563delA
  hgvsp: ENSP00000372398.4:p.Gln188ArgfsTer?
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000405925
  ensembl transcript: ENST00000433358
  gene symbol: NME4
  hgvsc: ENST00000433358.1:c.*127delA
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000389048
  ensembl transcript: ENST00000450036
  gene symbol: NME4
  hgvsc: ENST00000450036.1:c.329delA
  hgvsp: ENSP00000389048.1:p.Gln110ArgfsTer?
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000460297
  gene symbol: NME4
  hgvsc: ENST00000460297.1:n.1336delA
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103202
  ensembl transcript: ENST00000468031
  gene symbol: NME4
  hgvsc: ENST00000468031.1:n.1429delA
  variant of: http://identifiers.org/hgnc/7852
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103202
  ensembl protein: ENSP00000395605
  ensembl transcript: ENST00000444498
  gene symbol: NME4
  hgvsc: ENST00000444498.1:c.516+23delA
  variant of: http://identifiers.org/hgnc/7852
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln180ArgfsTer96
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: CA

GenotypeQuality
all individuals: 5735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42934
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5849
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1239
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.824334e6

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.676e0

QD
type: SiteQuality
SIO_000300: 8.93e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.237e0

DP
type: SiteQuality
SIO_000300: 1.823187e6

FS
type: SiteQuality
SIO_000300: 1.381e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 9.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.391e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -3.004e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.563e0

DP
type: SiteQuality
SIO_000300: 1.816717e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

QD
type: SiteQuality
SIO_000300: 3.89e0

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.729050279329609e-5
allele num: 11456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.805847e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.239e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.405e0

MQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 547
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.138735420503377e-5
allele num: 16290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.802485e6

VQSLOD
type: SiteQuality
SIO_000300: 2.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.162e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.569e1

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514279657167086e-5
allele num: 66038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.715e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.657e0

DP
type: SiteQuality
SIO_000300: 1.794673e6

MQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.513e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527743827914935e-5
allele num: 65456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.378e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.253e0

QD
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65456
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.351834430856068e-4
allele num: 8504
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.09e-2

MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.747441e6

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531252871099133e-5
allele num: 65306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.730087e6

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
all individuals: 542
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.656264355495667e-5
allele num: 65306
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.730087e6

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.068896731624981e-5
allele num: 65170
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.194e0

QD
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.722817e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 896
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South Asian
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allele frequency: 6.841646971016296e-4
allele num: 16078
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.068896731624981e-5
allele num: 65170
num of homozygotes: 0

Latino
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allele frequency: 8.917424647761727e-5
allele num: 11214
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -9.6e-2

FS
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.722817e6

MQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-2

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.54813140539369e-5
allele num: 64594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8382
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

QD
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MQRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 4.001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555597038143239e-5
allele num: 64284
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.541375e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e0

VQSLOD
type: SiteQuality
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FS
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QD
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MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.84e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15850
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.563574957783476e-5
allele num: 63956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8290
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10970
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.936e0

FS
type: SiteQuality
SIO_000300: 5.965e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 1.514264e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.049e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

FS
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
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DP
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SIO_000300: 4.831348e6

ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.345e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
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South Asian
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African
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Latino
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East Asian
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Other
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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Latino
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele num: 66720
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European (Finnish)
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allele num: 6614
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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VQSLOD
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MQRankSum
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QD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele num: 10406
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Other
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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FS
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MQ
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele num: 66724
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MQ
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DP
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ReadPosRankSum
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FS
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.26e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.26e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

QD
type: SiteQuality
SIO_000300: 1.601e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.09e-1

DP
type: SiteQuality
SIO_000300: 4.834642e6

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 913
bin: 8.25e1
variant carriers: 30

GenotypeQuality
all individuals: 53738
bin: 9.75e1
variant carriers: 49552

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 8
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variant carriers: 5

GenotypeQuality
all individuals: 953
bin: 7.75e1
variant carriers: 23

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 1

East Asian
type: Population
allele count: 4965
allele frequency: 5.742539902845246e-1
allele num: 8646
num of homozygotes: 1421

European (Finnish)
type: Population
allele count: 3644
allele frequency: 5.511191772534785e-1
allele num: 6612
num of homozygotes: 1015

European (Non-Finnish)
type: Population
allele count: 38421
allele frequency: 5.757335091557527e-1
allele num: 66734
num of homozygotes: 11075

African
type: Population
allele count: 5629
allele frequency: 5.409379204305208e-1
allele num: 10406
num of homozygotes: 1559

Latino
type: Population
allele count: 5469
allele frequency: 4.725246241575946e-1
allele num: 11574
num of homozygotes: 1316

South Asian
type: Population
allele count: 12317
allele frequency: 7.459423449612403e-1
allele num: 16512
num of homozygotes: 4662

Other
type: Population
allele count: 494
allele frequency: 5.440528634361234e-1
allele num: 908
num of homozygotes: 146

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

DP
type: SiteQuality
SIO_000300: 6.372532e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.045e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

QD
type: SiteQuality
SIO_000300: 2.105e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2522
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 5040
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variant carriers: 0

GenotypeQuality
all individuals: 4522
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495324862143371e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.481e0

FS
type: SiteQuality
SIO_000300: 4.917e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 2.638203e6

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.158e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.188e1

GenotypeQuality
all individuals: 22908
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 5028
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variant carriers: 0

GenotypeQuality
all individuals: 5037
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11779
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variant carriers: 0

GenotypeQuality
all individuals: 4523
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.203e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.704e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 2.209e1

DP
type: SiteQuality
SIO_000300: 2.638023e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.079e0

FS
type: SiteQuality
SIO_000300: 2.163e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.35e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 22904
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 5039
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variant carriers: 0

GenotypeQuality
all individuals: 11798
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 22
allele frequency: 2.114164904862579e-3
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

FS
type: SiteQuality
SIO_000300: 6.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.638445e6

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

QD
type: SiteQuality
SIO_000300: 1.213e1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 4524
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variant carriers: 0

GenotypeQuality
all individuals: 11835
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variant carriers: 0

GenotypeQuality
all individuals: 5031
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.094e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.215e-1

QD
type: SiteQuality
SIO_000300: 2.12e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.573e0

DP
type: SiteQuality
SIO_000300: 2.636136e6

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 5031
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22884
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2524
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

FS
type: SiteQuality
SIO_000300: 1.336e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

DP
type: SiteQuality
SIO_000300: 2.636208e6

GenotypeQuality
all individuals: 6050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4524
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5040
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variant carriers: 0

GenotypeQuality
all individuals: 22884
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

DP
type: SiteQuality
SIO_000300: 2.636041e6

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.667e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

QD
type: SiteQuality
SIO_000300: 8.07e0

FS
type: SiteQuality
SIO_000300: 2.424e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.079e-1

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11842
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.636047e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.01e-1

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 4526
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5040
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GenotypeQuality
all individuals: 5030
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.648856428983279e-4
allele num: 10406
num of homozygotes: 0

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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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FS
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BaseQRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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East Asian
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QD
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MQ
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Latino
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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African
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South Asian
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Other
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VQSLOD
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MQ
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QD
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FS
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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South Asian
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African
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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South Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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MQRankSum
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Latino
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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African
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South Asian
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Latino
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European (Finnish)
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DP
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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FS
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DP
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MQ
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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Other
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MQRankSum
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VQSLOD
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FS
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DP
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QD
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MQ
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SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.465e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5049
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e0

DP
type: SiteQuality
SIO_000300: 2.624727e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

FS
type: SiteQuality
SIO_000300: 5.212e0

VQSLOD
type: SiteQuality
SIO_000300: 7.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.429e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6059
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.395e1

MQRankSum
type: SiteQuality
SIO_000300: -7.61e-1

FS
type: SiteQuality
SIO_000300: 7.146e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.624232e6

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

GenotypeQuality
all individuals: 5028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22775
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variant carriers: 2

GenotypeQuality
all individuals: 2814
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

FS
type: SiteQuality
SIO_000300: 7.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: -2.666e-1

DP
type: SiteQuality
SIO_000300: 2.62278e6

QD
type: SiteQuality
SIO_000300: 1.543e1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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GenotypeQuality
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variant carriers: 74

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11719
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 47
allele frequency: 7.048801703710369e-4
allele num: 66678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 27
allele frequency: 4.083484573502722e-3
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

DP
type: SiteQuality
SIO_000300: 2.619862e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.563e1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.417e0

GenotypeQuality
all individuals: 2510
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5567
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variant carriers: 0

GenotypeQuality
all individuals: 4488
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

DP
type: SiteQuality
SIO_000300: 2.582718e6

QD
type: SiteQuality
SIO_000300: 1.42e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4956
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 973
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variant carriers: 0

GenotypeQuality
all individuals: 4486
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.73e-1

QD
type: SiteQuality
SIO_000300: 7.79e0

FS
type: SiteQuality
SIO_000300: 2.007e0

MQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.05e-1

DP
type: SiteQuality
SIO_000300: 2.551646e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.929e0

VQSLOD
type: SiteQuality
SIO_000300: -6.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 22701
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

DP
type: SiteQuality
SIO_000300: 2.543867e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4266
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 438
allele frequency: 4.221279876638397e-2
allele num: 10376
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.059338668277215e-5
allele num: 66230
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.080804577770071e-3
allele num: 11534
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.3256e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

VQSLOD
type: SiteQuality
SIO_000300: 6.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.43e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 1.598e1

GenotypeQuality
all individuals: 2694
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variant carriers: 0

GenotypeQuality
all individuals: 7889
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3859
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016227302889546e-5
allele num: 66308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.407e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.58e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

DP
type: SiteQuality
SIO_000300: 2.333006e6

GenotypeQuality
all individuals: 25183
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
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variant carriers: 0

GenotypeQuality
all individuals: 8675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 565
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GenotypeQuality
all individuals: 704
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variant carriers: 0

GenotypeQuality
all individuals: 2701
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variant carriers: 0

GenotypeQuality
all individuals: 4370
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variant carriers: 0

GenotypeQuality
all individuals: 146
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GenotypeQuality
all individuals: 4657
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variant carriers: 0

GenotypeQuality
all individuals: 4402
bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.179801793298726e-4
allele num: 8476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.01568154402895e-5
allele num: 66320
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.338294e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.516e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507658907248824e-5
allele num: 66328
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.621e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.342526e6

QD
type: SiteQuality
SIO_000300: 1.289e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.348e0

DP
type: SiteQuality
SIO_000300: 2.351744e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.743e1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66342
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.307e0

VQSLOD
type: SiteQuality
SIO_000300: -4.709e-1

QD
type: SiteQuality
SIO_000300: 1.59e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

DP
type: SiteQuality
SIO_000300: 2.355933e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.127e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1885
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548562933597621e-5
allele num: 64576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.060119e6

MQ
type: SiteQuality
SIO_000300: 6.043e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.48e-1

QD
type: SiteQuality
SIO_000300: 1.03e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

FS
type: SiteQuality
SIO_000300: 8.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.47041471455839e-4
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.968102073365231e-5
allele num: 10032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 46
allele frequency: 7.121404464810973e-4
allele num: 64594
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.80187979223349e-4
allele num: 16172
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 3.061939e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.43e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 2.419e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 3.060459e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64674
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Other
type: Population
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allele num: 886
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.851e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546216408448527e-5
allele num: 64674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 3.062e6

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.249e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 1.038e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.912767644726408e-5
allele num: 10088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.575e0

QD
type: SiteQuality
SIO_000300: 2.188e1

DP
type: SiteQuality
SIO_000300: 3.062359e6

MQRankSum
type: SiteQuality
SIO_000300: -5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.88e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 3.471e0

MQ
type: SiteQuality
SIO_000300: 5.718e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.494e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.090139365285374e-5
allele num: 64722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.063276e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

FS
type: SiteQuality
SIO_000300: 2.74e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e-1

QD
type: SiteQuality
SIO_000300: 3.095e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545069682642687e-5
allele num: 64722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.123e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.613e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

DP
type: SiteQuality
SIO_000300: 3.063136e6

VQSLOD
type: SiteQuality
SIO_000300: -2.407e0

QD
type: SiteQuality
SIO_000300: 1.343e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 5.797e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
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variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54526068547764e-5
allele num: 64714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

QD
type: SiteQuality
SIO_000300: 1.226e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.063744e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e0

FS
type: SiteQuality
SIO_000300: 5.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 865
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GenotypeQuality
all individuals: 1626
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54526068547764e-5
allele num: 64714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 3.063744e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

QD
type: SiteQuality
SIO_000300: 1.226e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546312045770837e-5
allele num: 64670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.852216748768472e-4
allele num: 16240
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 1.295e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 1.738e0

VQSLOD
type: SiteQuality
SIO_000300: 7.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.916e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.232893601282209e-4
allele num: 16222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.547e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.24e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.901e1

MQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.202e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.545308443565336e-5
allele num: 64712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.068234e6

ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2014
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GenotypeQuality
all individuals: 157
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GenotypeQuality
all individuals: 360
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variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3560
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13713
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.140243153628883e-5
allele num: 16286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.689e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

DP
type: SiteQuality
SIO_000300: 3.069435e6

QD
type: SiteQuality
SIO_000300: 1.167e1

FS
type: SiteQuality
SIO_000300: 8.231999999999999e0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2520
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10640
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64964
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110975311659741e-5
allele num: 16364
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 3.228e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

QD
type: SiteQuality
SIO_000300: 1.55e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 3.438759e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 163

GenotypeQuality
all individuals: 166
bin: 4.75e1
variant carriers: 112

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 127

GenotypeQuality
all individuals: 132
bin: 3.75e1
variant carriers: 65

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 43

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 75

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 46

GenotypeQuality
all individuals: 40205
bin: 9.75e1
variant carriers: 37276

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 56

GenotypeQuality
all individuals: 177
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 1436
bin: 7.75e1
variant carriers: 217

GenotypeQuality
all individuals: 481
bin: 2.25e1
variant carriers: 46

GenotypeQuality
all individuals: 183
bin: 7.5e0
variant carriers: 25

GenotypeQuality
all individuals: 1196
bin: 8.25e1
variant carriers: 230

GenotypeQuality
all individuals: 10640
bin: 6.25e1
variant carriers: 126

GenotypeQuality
all individuals: 1115
bin: 7.25e1
variant carriers: 130

European (Finnish)
type: Population
allele count: 2877
allele frequency: 4.359090909090909e-1
allele num: 6600
num of homozygotes: 613

South Asian
type: Population
allele count: 7844
allele frequency: 4.793449034465901e-1
allele num: 16364
num of homozygotes: 1915

African
type: Population
allele count: 4827
allele frequency: 4.747246262785209e-1
allele num: 10168
num of homozygotes: 1122

European (Non-Finnish)
type: Population
allele count: 25297
allele frequency: 3.89400283233791e-1
allele num: 64964
num of homozygotes: 4906

Latino
type: Population
allele count: 5003
allele frequency: 4.345145040819872e-1
allele num: 11514
num of homozygotes: 1097

East Asian
type: Population
allele count: 2929
allele frequency: 3.419332243754378e-1
allele num: 8566
num of homozygotes: 491

Other
type: Population
allele count: 343
allele frequency: 3.880090497737557e-1
allele num: 884
num of homozygotes: 65

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
SIO_000300: 1.55e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

DP
type: SiteQuality
SIO_000300: 3.438759e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

FS
type: SiteQuality
SIO_000300: 3.228e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

GenotypeQuality
all individuals: 4445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.50795593635251e-4
allele num: 16340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.468e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 7.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

DP
type: SiteQuality
SIO_000300: 2.082684e6

QD
type: SiteQuality
SIO_000300: 1.349e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e-1

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15122
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2072
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54659902873581e-5
allele num: 64658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.349e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.468e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 2.082684e6

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.84e-1

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15094
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3148
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6734
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19007
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64640
num of homozygotes: 0