11-64606910-C-CCTGGTCCCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606910
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606919
    reference: chr 11
allele count: 32
allele frequency: 3.105168164263396e-4
allele num: 103054
alternate allele: CCTGGTCCCA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14168
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 13515
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14042
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24664
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7750
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14600
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8080
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 744
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

11-64606910-C-CCTTCTCCCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606910
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606919
    reference: chr 11
allele count: 2
allele frequency: 1.940730102664623e-5
allele num: 103054
alternate allele: CCTTCTCCCA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13515
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14168
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24664
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4922
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8570
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10272
  num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

11-64606916-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606916
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606916
    reference: chr 11
allele count: 2
allele frequency: 2.739425816348893e-5
allele num: 73008
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.675+34T>C
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15870
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 5.622715771717739e-5
  allele num: 35570
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 488
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3494
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

11-64606921-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606921
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606921
    reference: chr 11
allele count: 7
allele frequency: 8.051900248458637e-5
allele num: 86936
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.675+29G>C
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19584
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9648
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9245
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19311
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5808
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8232
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.401536983669548e-4
  allele num: 4164
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11862
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

11-64606921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606921
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606921
    reference: chr 11
allele count: 1
allele frequency: 1.150271464065519e-5
allele num: 86936
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.675+29G>A
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19311
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9245
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5808
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9810
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11862
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7446
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

11-64606938-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606938
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606938
    reference: chr 11
allele count: 3
allele frequency: 2.629964057157885e-5
allele num: 114070
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.675+12G>A
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40264
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5668
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15786
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8530
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

11-64606939-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606939
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606939
    reference: chr 11
allele count: 6
allele frequency: 5.247966413014957e-5
allele num: 114330
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.675+11C>T
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16020
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41506
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 3801
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 4872
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genotype quality: GenotypeQuality
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  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 836
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.17343346632246e-4
  allele num: 8522
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 1.263264274886306e-4
  allele num: 15832
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

11-64606939-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606939
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606939
    reference: chr 11
allele count: 1
allele frequency: 8.746610688358261e-6
allele num: 114330
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.675+11C>G
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
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genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3801
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 41506
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 823
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genotype quality: GenotypeQuality
  all individuals: 1270
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genotype quality: GenotypeQuality
  all individuals: 562
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genotype quality: GenotypeQuality
  all individuals: 179
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genotype quality: GenotypeQuality
  all individuals: 446
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genotype quality: GenotypeQuality
  all individuals: 1607
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8522
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 62820
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9480
  num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

11-64606949-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606949
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606949
    reference: chr 11
allele count: 1
allele frequency: 8.61489687968435e-6
allele num: 116078
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.675+1G>C
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 368
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45661
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
hgvs: c.675+1G>C
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5820
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11274
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

11-64606955-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606955
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606955
    reference: chr 11
allele count: 1
allele frequency: 8.568392912225382e-6
allele num: 116708
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.670G>A
  hgvsp: ENSP00000345133.5:p.Gly224Ser
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly224Ser
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64164
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8586
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

11-64606956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606956
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606956
    reference: chr 11
allele count: 24
allele frequency: 2.054583433208917e-4
allele num: 116812
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.669C>T
  hgvsp: ENST00000342711.5:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33669
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17826
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5198
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn223Asn
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 23
  allele frequency: 3.581438804110869e-4
  allele num: 64220
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8586
  num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

11-64606957-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606957
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606957
    reference: chr 11
allele count: 3
allele frequency: 2.565154935358096e-5
allele num: 116952
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.668A>G
  hgvsp: ENSP00000345133.5:p.Asn223Ser
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33813
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn223Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9774
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64296
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

11-64606967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606967
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606967
    reference: chr 11
allele count: 1
allele frequency: 8.535044894336143e-6
allele num: 117164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.658C>T
  hgvsp: ENSP00000345133.5:p.Leu220Phe
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5245
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu220Phe
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8588
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16264
  num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

11-64606969-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606969
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606969
    reference: chr 11
allele count: 13
allele frequency: 1.110048500580641e-4
allele num: 117112
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.656G>A
  hgvsp: ENSP00000345133.5:p.Arg219His
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18315
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33347
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg219His
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 3
  allele frequency: 3.494060097833683e-4
  allele num: 8586
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5886
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

11-64606970-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606970
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606970
    reference: chr 11
allele count: 4
allele frequency: 3.416817576109612e-5
allele num: 117068
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.655C>T
  hgvsp: ENSP00000345133.5:p.Arg219Cys
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33124
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg219Cys
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.165229550221394e-4
  allele num: 8582
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11336
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

11-64606982-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606982
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606982
    reference: chr 11
allele count: 2
allele frequency: 1.710893257369673e-5
allele num: 116898
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.643G>A
  hgvsp: ENSP00000345133.5:p.Gly215Ser
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 46824
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 392
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly215Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11318
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5868
  num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff

11-64606983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606983
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606983
    reference: chr 11
allele count: 6
allele frequency: 5.132328537457445e-5
allele num: 116906
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.642C>T
  hgvsp: ENST00000342711.5:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 388
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 926
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 178
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe214Phe
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11314
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 858
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

11-64606990-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606990
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606990
    reference: chr 11
allele count: 1
allele frequency: 8.5794196880523e-6
allele num: 116558
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.635C>T
  hgvsp: ENSP00000345133.5:p.Ala212Val
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18738
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 814
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala212Val
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5848
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 852
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/11-64606993-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606993
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606993
    reference: chr 11
allele count: 1
allele frequency: 8.597860852219967e-6
allele num: 116308
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.632T>G
  hgvsp: ENSP00000345133.5:p.Leu211Arg
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 917
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu211Arg
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11262
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16102
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

11-64606994-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606994
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606994
    reference: chr 11
allele count: 1
allele frequency: 8.60141063134354e-6
allele num: 116260
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.631C>G
  hgvsp: ENSP00000345133.5:p.Leu211Val
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Leu211Val
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8576
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11254
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

11-64606994-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606994
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606994
    reference: chr 11
allele count: 11
allele frequency: 9.461551694477895e-5
allele num: 116260
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.631C>A
  hgvsp: ENSP00000345133.5:p.Leu211Met
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 492
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  variant carriers: 0
hgvs: p.Leu211Met
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8576
  num of homozygotes: 0
population: African
  type: Population
  allele count: 10
  allele frequency: 1.028171910343409e-3
  allele num: 9726
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

11-64606996-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606996
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606996
    reference: chr 11
allele count: 5
allele frequency: 4.312501078125269e-5
allele num: 115942
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.629G>A
  hgvsp: ENSP00000345133.5:p.Arg210His
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg210His
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5786
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16058
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD

11-64606997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606997
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606997
    reference: chr 11
allele count: 2
allele frequency: 1.725238514224592e-5
allele num: 115926
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.628C>T
  hgvsp: ENSP00000345133.5:p.Arg210Cys
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4995
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg210Cys
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16064
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 846
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

11-64606997-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64606997
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64606997
    reference: chr 11
allele count: 2
allele frequency: 1.725238514224592e-5
allele num: 115926
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.628C>G
  hgvsp: ENSP00000345133.5:p.Arg210Gly
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18859
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4995
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg210Gly
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5782
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 63752
  num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

11-64607000-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607000
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607000
    reference: chr 11
allele count: 3
allele frequency: 2.592016588906169e-5
allele num: 115740
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.625A>G
  hgvsp: ENSP00000345133.5:p.Ile209Val
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5006
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45858
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile209Val
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 844
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16024
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

11-64607000-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607000
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607000
    reference: chr 11
allele count: 1
allele frequency: 8.640055296353896e-6
allele num: 115740
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.625A>C
  hgvsp: ENSP00000345133.5:p.Ile209Leu
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5006
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45858
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile209Leu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 844
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5764
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-64607006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607006
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607006
    reference: chr 11
allele count: 1
allele frequency: 8.739272542953525e-6
allele num: 114426
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.619G>A
  hgvsp: ENSP00000345133.5:p.Gly207Arg
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18696
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4895
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly207Arg
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9512
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 62956
  num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

11-64607007-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607007
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607007
    reference: chr 11
allele count: 19
allele frequency: 1.660984351779002e-4
allele num: 114390
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.618C>T
  hgvsp: ENST00000342711.5:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18765
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29501
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 4690
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44329
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn206Asn
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 2
  allele frequency: 1.797591227754808e-4
  allele num: 11126
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15798
  num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

11-64607024-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607024
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607024
    reference: chr 11
allele count: 585
allele frequency: 5.396280717290237e-3
allele num: 108408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.601G>A
  hgvsp: ENSP00000345133.5:p.Val201Ile
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 16288
  bin: 2.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23475
  bin: 2.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 3.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 1.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 1.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34995
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 563
genotype quality: GenotypeQuality
  all individuals: 4049
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val201Ile
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 38
  allele frequency: 7.268553940321346e-3
  allele num: 5228
  num of homozygotes: 0
population: African
  type: Population
  allele count: 22
  allele frequency: 2.455905336012503e-3
  allele num: 8958
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

11-64607025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607025
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607025
    reference: chr 11
allele count: 38
allele frequency: 3.512534200990904e-4
allele num: 108184
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.600C>T
  hgvsp: ENST00000342711.5:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23475
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16372
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35789
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10456
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4056
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 9.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 916
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 337
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genotype quality: GenotypeQuality
  all individuals: 709
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn200Asn
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14960
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5220
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

11-64607026-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607026
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607026
    reference: chr 11
allele count: 4
allele frequency: 3.732527107478118e-5
allele num: 107166
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.599A>G
  hgvsp: ENSP00000345133.5:p.Asn200Ser
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15847
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22427
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33077
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3855
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn200Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5152
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8868
  num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

11-64607028-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607028
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607028
    reference: chr 11
allele count: 1
allele frequency: 9.340731192437744e-6
allele num: 107058
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.597C>G
  hgvsp: ENSP00000345133.5:p.Asp199Glu
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15762
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22588
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11558
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3803
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp199Glu
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8858
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.694915254237288e-5
  allele num: 59000
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

11-64607037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607037
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607037
    reference: chr 11
allele count: 4
allele frequency: 3.876344607035566e-5
allele num: 103190
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.588C>T
  hgvsp: ENST00000342711.5:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19694
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13600
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val196Val
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4948
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 56968
  num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-64607045-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607045
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607045
    reference: chr 11
allele count: 1
allele frequency: 1.002626882431972e-5
allele num: 99738
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.582-2A>G
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25329
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
hgvs: c.582-2A>G
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4738
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 724
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-64607046-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607046
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607046
    reference: chr 11
allele count: 1
allele frequency: 1.009489198465576e-5
allele num: 99060
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.582-3C>G
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15689
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24616
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3390
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
hgvs: c.582-3C>G
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 734
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4696
  num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-64607050-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607050
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607050
    reference: chr 11
allele count: 1
allele frequency: 1.031523353688728e-5
allele num: 96944
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.582-7C>A
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13341
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21360
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21556
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3871
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
hgvs: c.582-7C>A
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 7.295010213014298e-5
  allele num: 13708
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8054
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

11-64607073-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607073
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607073
    reference: chr 11
allele count: 7
allele frequency: 8.450432179245739e-5
allele num: 82836
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.582-30G>A
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15240
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24551
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 590
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3802
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 6
  allele frequency: 1.308044473512099e-4
  allele num: 45870
  num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-64607074-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607074
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607074
    reference: chr 11
allele count: 1
allele frequency: 1.226903540843619e-5
allele num: 81506
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.582-31C>T
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7446
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3818
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3748
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 580
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6868
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-64607078-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607078
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607078
    reference: chr 11
allele count: 1
allele frequency: 1.250406382074174e-5
allele num: 79974
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.582-35C>T
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23790
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 979
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.259172239291524e-5
  allele num: 44264
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6780
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3648
  num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

11-64607080-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607080
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607080
    reference: chr 11
allele count: 1
allele frequency: 1.27200569858553e-5
allele num: 78616
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.582-37G>A
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4462
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4469
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7052
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6692
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3562
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

11-64607081-CTGTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607081
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607077
    reference: chr 11
allele count: 14
allele frequency: 1.795194009181135e-4
allele num: 77986
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.582-42_582-39delCACA
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17044
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23224
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8515
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7312
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22995
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 43198
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 554
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.427347987439338e-4
  allele num: 7006
  num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: CTGTG
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-64607081-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64607081
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64607081
    reference: chr 11
allele count: 37
allele frequency: 4.744441309978714e-4
allele num: 77986
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171219
  ensembl protein: ENSP00000345133
  ensembl transcript: ENST00000342711
  gene symbol: CDC42BPG
  hgvsc: ENST00000342711.5:c.582-38G>A
  variant of: http://identifiers.org/hgnc/29829
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8515
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 17044
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23224
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22995
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 9.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 7312
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.427347987439338e-4
  allele num: 7006
  num of homozygotes: 0
population: African
  type: Population
  allele count: 35
  allele frequency: 5.28222155146393e-3
  allele num: 6626
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5368
  num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

16-66547791-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66547791
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66547791
    reference: chr 16
allele count: 1
allele frequency: 1.737196859148079e-5
allele num: 57564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.328-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.526-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.328-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.146-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.565-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.328-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.178-77C>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.619-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.68-77C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.619-26C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.328-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.435-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.274-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.472-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.544-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*477-77C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.745-77C>A
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8734
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

16-66547792-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66547792
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66547792
    reference: chr 16
allele count: 26
allele frequency: 4.510599909788002e-4
allele num: 57642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.328-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.178-78A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.274-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.565-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.146-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.328-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.328-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.68-78A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.544-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.472-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.526-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.328-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.435-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.619-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.619-27A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*477-78A>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.745-78A>C
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21920
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18076
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

16-66547796-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66547796
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66547796
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 56746
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.68-82T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.526-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.619-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.178-82T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.745-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.565-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.328-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.146-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*477-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.328-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.328-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.328-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.274-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.435-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.472-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.544-82T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.619-31T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-82T>C
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

16-66547803-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66547803
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66547803
    reference: chr 16
allele count: 4
allele frequency: 7.845290864158789e-5
allele num: 50986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.619-38T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.565-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.544-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.68-89T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.328-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.274-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.745-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.328-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.178-89T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.328-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.146-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*477-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.526-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.328-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.619-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.435-89T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.472-89T>C
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24192
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

16-66547805-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66547805
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66547805
    reference: chr 16
allele count: 1
allele frequency: 2.029220779220779e-5
allele num: 49280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.435-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.274-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.526-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.565-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.68-91A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.328-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.544-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.146-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.745-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.472-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.328-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.328-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.178-91A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.619-40A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.328-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.619-91A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*477-91A>T
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24921
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

16-66547808-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66547808
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66547808
    reference: chr 16
allele count: 5
allele frequency: 1.069015650389122e-4
allele num: 46772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*477-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.328-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.68-94G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.435-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.274-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.619-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.526-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.178-94G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.146-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.328-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.328-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.328-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.619-43G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.745-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.544-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.472-94G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.565-94G>A
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff

16-66547810-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66547810
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66547810
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 44358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.328-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.745-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.146-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.328-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*477-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.178-96T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.328-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.68-96T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.328-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.565-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.274-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.435-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.472-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.544-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.526-96T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.619-45T>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.619-96T>C
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11973
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

16-66550991-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66550991
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66550991
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.525+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.327+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3277C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.564+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.618+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.744+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.327+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.67+48C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.177+48C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.434+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.145+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.327+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.273+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.543+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.618+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.471+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.327+48C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*476+48C>T
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

16-66550991-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66550991
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66550991
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.744+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.145+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.564+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3277C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.273+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.327+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.618+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.67+48C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.434+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.525+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.327+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.177+48C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.327+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.327+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.618+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.543+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.471+48C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*476+48C>G
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

16-66551019-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551019
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551019
    reference: chr 16
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.273+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.744+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.327+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.327+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.618+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.145+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.327+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.67+20T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.564+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.471+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3305T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.177+20T>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*476+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.543+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.434+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.327+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.525+20T>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.618+20T>A
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

16-66551031-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551031
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551031
    reference: chr 16
allele count: 6
allele frequency: 4.941932295527551e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.327+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.273+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*476+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.564+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.145+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.67+8G>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.327+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.543+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.525+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.618+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.177+8G>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.327+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.434+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.618+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.471+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3317G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.327+8G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.744+8G>C
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.67+8G>C
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

16-66551038-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551038
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551038
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.618+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.177+1G>C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.543+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.525+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.67+1G>C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.145+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.327+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.327+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.471+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.744+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.434+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.327+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.618+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3324G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.273+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.327+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.564+1G>C
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*476+1G>C
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31122
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.67+1G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ

16-66551043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551043
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551043
    reference: chr 16
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.539C>T
  hgvsp: ENSP00000438143.2:p.Pro180Leu
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.323C>T
  hgvsp: ENSP00000462341.1:p.Pro108Leu
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.323C>T
  hgvsp: ENSP00000433770.1:p.Pro108Leu
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.323C>T
  hgvsp: ENSP00000463560.1:p.Pro108Leu
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.63C>T
  hgvsp: ENSP00000462196.1:p.Pro22Leu
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.269C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.560C>T
  hgvsp: ENSP00000407469.3:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.614C>T
  hgvsp: ENSP00000414334.2:p.Pro205Leu
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.323C>T
  hgvsp: ENSP00000434594.1:p.Pro108Leu
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.521C>T
  hgvsp: ENSP00000435312.1:p.Pro174Leu
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.467C>T
  hgvsp: ENSP00000440898.1:p.Pro156Leu
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.740C>T
  hgvsp: ENSP00000299697.7:p.Pro247Leu
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.430C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*472C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.173C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.614C>T
  hgvsp: ENSP00000455187.1:p.Pro205Leu
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3329C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.141C>T
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31122
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro22Leu
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

16-66551050-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551050
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551047
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: inframe_deletion
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.313_315delAAG
  hgvsp: ENSP00000462341.1:p.Lys105del
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.420_422delAAG
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*462_*464delAAG
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: inframe_deletion
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.604_606delAAG
  hgvsp: ENSP00000414334.2:p.Lys202del
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: inframe_deletion
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.457_459delAAG
  hgvsp: ENSP00000440898.1:p.Lys153del
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: inframe_deletion
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.313_315delAAG
  hgvsp: ENSP00000433770.1:p.Lys105del
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: inframe_deletion
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.313_315delAAG
  hgvsp: ENSP00000434594.1:p.Lys105del
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: inframe_deletion
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.730_732delAAG
  hgvsp: ENSP00000299697.7:p.Lys244del
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: inframe_deletion
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.529_531delAAG
  hgvsp: ENSP00000438143.2:p.Lys177del
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: inframe_deletion
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.550_552delAAG
  hgvsp: ENSP00000407469.3:p.Lys184del
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.53_55delAAG
  hgvsp: ENSP00000462196.1:p.Lys19del
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: inframe_deletion
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.313_315delAAG
  hgvsp: ENSP00000463560.1:p.Lys105del
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.259_261delAAG
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.131_133delAAG
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: inframe_deletion
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.604_606delAAG
  hgvsp: ENSP00000455187.1:p.Lys202del
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3339_344-3337delAAG
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.163_165delAAG
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: inframe_deletion
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.511_513delAAG
  hgvsp: ENSP00000435312.1:p.Lys171del
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys19del
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: CCTT
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

16-66551069-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551069
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551069
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.441A>T
  hgvsp: ENSP00000440898.1:p.Arg147Ser
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.404A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.297A>T
  hgvsp: ENSP00000462341.1:p.Arg99Ser
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.297A>T
  hgvsp: ENSP00000463560.1:p.Arg99Ser
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.297A>T
  hgvsp: ENSP00000434594.1:p.Arg99Ser
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.297A>T
  hgvsp: ENSP00000433770.1:p.Arg99Ser
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.534A>T
  hgvsp: ENSP00000407469.3:p.Arg178Ser
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.513A>T
  hgvsp: ENSP00000438143.2:p.Arg171Ser
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*446A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.588A>T
  hgvsp: ENSP00000455187.1:p.Arg196Ser
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.147A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.243A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.495A>T
  hgvsp: ENSP00000435312.1:p.Arg165Ser
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.37A>T
  hgvsp: ENSP00000462196.1:p.Arg13Ser
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.588A>T
  hgvsp: ENSP00000414334.2:p.Arg196Ser
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3355A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.115A>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.714A>T
  hgvsp: ENSP00000299697.7:p.Arg238Ser
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg13Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

16-66551081-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551081
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551081
    reference: chr 16
allele count: 52
allele frequency: 4.28293743616776e-4
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.285G>A
  hgvsp: ENST00000525974.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.25G>A
  hgvsp: ENST00000561728.1:c.25G>A(p.%3D)
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.501G>A
  hgvsp: ENST00000545043.2:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.285G>A
  hgvsp: ENST00000563478.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.285G>A
  hgvsp: ENST00000563369.2:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.135G>A
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.429G>A
  hgvsp: ENST00000544898.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.522G>A
  hgvsp: ENST00000417693.3:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*434G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.576G>A
  hgvsp: ENST00000451102.2:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.483G>A
  hgvsp: ENST00000527284.1:c.483G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.285G>A
  hgvsp: ENST00000527800.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.702G>A
  hgvsp: ENST00000299697.7:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3367G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.103G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.576G>A
  hgvsp: ENST00000564917.1:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.231G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.392G>A
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg9Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-66551092-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551092
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551092
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.14T>G
  hgvsp: ENSP00000462196.1:p.Cys6Gly
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.490T>G
  hgvsp: ENSP00000438143.2:p.Cys164Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.124T>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.565T>G
  hgvsp: ENSP00000414334.2:p.Cys189Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.220T>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.691T>G
  hgvsp: ENSP00000299697.7:p.Cys231Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.274T>G
  hgvsp: ENSP00000463560.1:p.Cys92Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.565T>G
  hgvsp: ENSP00000455187.1:p.Cys189Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.418T>G
  hgvsp: ENSP00000440898.1:p.Cys140Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.472T>G
  hgvsp: ENSP00000435312.1:p.Cys158Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.274T>G
  hgvsp: ENSP00000434594.1:p.Cys92Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.274T>G
  hgvsp: ENSP00000433770.1:p.Cys92Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3378T>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.381T>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*423T>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.511T>G
  hgvsp: ENSP00000407469.3:p.Cys171Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.92T>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.274T>G
  hgvsp: ENSP00000462341.1:p.Cys92Gly
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys6Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

16-66551094-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551094
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551094
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.563C>T
  hgvsp: ENSP00000414334.2:p.Thr188Ile
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3380C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.272C>T
  hgvsp: ENSP00000433770.1:p.Thr91Ile
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.689C>T
  hgvsp: ENSP00000299697.7:p.Thr230Ile
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.218C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.416C>T
  hgvsp: ENSP00000440898.1:p.Thr139Ile
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.90C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.379C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.12C>T
  hgvsp: ENSP00000462196.1:p.Thr5Ile
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*421C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.272C>T
  hgvsp: ENSP00000462341.1:p.Thr91Ile
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.488C>T
  hgvsp: ENSP00000438143.2:p.Thr163Ile
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.470C>T
  hgvsp: ENSP00000435312.1:p.Thr157Ile
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.272C>T
  hgvsp: ENSP00000434594.1:p.Thr91Ile
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.509C>T
  hgvsp: ENSP00000407469.3:p.Thr170Ile
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.563C>T
  hgvsp: ENSP00000455187.1:p.Thr188Ile
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.272C>T
  hgvsp: ENSP00000463560.1:p.Thr91Ile
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.122C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr5Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

16-66551095-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551095
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551095
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.217A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.121A>G
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.469A>G
  hgvsp: ENSP00000435312.1:p.Thr157Ala
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.508A>G
  hgvsp: ENSP00000407469.3:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.487A>G
  hgvsp: ENSP00000438143.2:p.Thr163Ala
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.271A>G
  hgvsp: ENSP00000462341.1:p.Thr91Ala
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.89A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.378A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.271A>G
  hgvsp: ENSP00000433770.1:p.Thr91Ala
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.562A>G
  hgvsp: ENSP00000455187.1:p.Thr188Ala
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.415A>G
  hgvsp: ENSP00000440898.1:p.Thr139Ala
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.11A>G
  hgvsp: ENSP00000462196.1:p.Thr5Ala
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.688A>G
  hgvsp: ENSP00000299697.7:p.Thr230Ala
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*420A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.562A>G
  hgvsp: ENSP00000414334.2:p.Thr188Ala
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.271A>G
  hgvsp: ENSP00000434594.1:p.Thr91Ala
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3381A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.271A>G
  hgvsp: ENSP00000463560.1:p.Thr91Ala
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr5Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

16-66551096-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551096
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551096
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.561G>A
  hgvsp: ENST00000451102.2:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.468G>A
  hgvsp: ENST00000527284.1:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.216G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.561G>A
  hgvsp: ENST00000564917.1:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.486G>A
  hgvsp: ENST00000545043.2:c.486G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.507G>A
  hgvsp: ENST00000417693.3:c.507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.10G>A
  hgvsp: ENST00000561728.1:c.10G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.270G>A
  hgvsp: ENST00000527800.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.88G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.270G>A
  hgvsp: ENST00000525974.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*419G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.414G>A
  hgvsp: ENST00000544898.1:c.414G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.270G>A
  hgvsp: ENST00000563369.2:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.120G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.270G>A
  hgvsp: ENST00000563478.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.687G>A
  hgvsp: ENST00000299697.7:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.377G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3382G>A
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu4Glu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/16-66551099-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551099
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551099
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.558T>G
  hgvsp: ENST00000564917.1:c.558T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.684T>G
  hgvsp: ENST00000299697.7:c.684T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.504T>G
  hgvsp: ENST00000417693.3:c.504T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.267T>G
  hgvsp: ENST00000563478.1:c.267T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.558T>G
  hgvsp: ENST00000451102.2:c.558T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.7T>G
  hgvsp: ENST00000561728.1:c.7T>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.267T>G
  hgvsp: ENST00000563369.2:c.267T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3385T>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.483T>G
  hgvsp: ENST00000545043.2:c.483T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.117T>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.411T>G
  hgvsp: ENST00000544898.1:c.411T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.267T>G
  hgvsp: ENST00000525974.1:c.267T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.267T>G
  hgvsp: ENST00000527800.1:c.267T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.213T>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*416T>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.374T>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.465T>G
  hgvsp: ENST00000527284.1:c.465T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.85T>G
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro3Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

16-66551100-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551100
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551100
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.212C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.683C>G
  hgvsp: ENSP00000299697.7:p.Pro228Arg
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.266C>G
  hgvsp: ENSP00000433770.1:p.Pro89Arg
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463326
  ensembl transcript: ENST00000562484
  gene symbol: TK2
  hgvsc: ENST00000562484.2:c.266C>G
  hgvsp: ENST00000562484.2:c.266C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.482C>G
  hgvsp: ENSP00000438143.2:p.Pro161Arg
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.503C>G
  hgvsp: ENSP00000407469.3:p.Pro168Arg
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.84C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.557C>G
  hgvsp: ENSP00000455187.1:p.Pro186Arg
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.557C>G
  hgvsp: ENSP00000414334.2:p.Pro186Arg
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.410C>G
  hgvsp: ENSP00000440898.1:p.Pro137Arg
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.116C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.266C>G
  hgvsp: ENSP00000462341.1:p.Pro89Arg
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000260851
  ensembl protein: ENSP00000462196
  ensembl transcript: ENST00000561728
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561728.1:c.6C>G
  hgvsp: ENSP00000462196.1:p.Pro3Arg
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.373C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*415C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.266C>G
  hgvsp: ENSP00000434594.1:p.Pro89Arg
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3386C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.464C>G
  hgvsp: ENSP00000435312.1:p.Pro155Arg
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.266C>G
  hgvsp: ENSP00000463560.1:p.Pro89Arg
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro3Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

16-66551109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551109
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551109
    reference: chr 16
allele count: 15
allele frequency: 1.235483073881888e-4
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.494G>A
  hgvsp: ENSP00000407469.3:p.Arg165Gln
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.455G>A
  hgvsp: ENSP00000435312.1:p.Arg152Gln
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.107G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*406G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.674G>A
  hgvsp: ENSP00000299697.7:p.Arg225Gln
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.257G>A
  hgvsp: ENSP00000463560.1:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.257G>A
  hgvsp: ENSP00000462341.1:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.401G>A
  hgvsp: ENSP00000440898.1:p.Arg134Gln
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.257G>A
  hgvsp: ENSP00000433770.1:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3395G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463326
  ensembl transcript: ENST00000562484
  gene symbol: TK2
  hgvsc: ENST00000562484.2:c.257G>A
  hgvsp: ENSP00000463326.1:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.548G>A
  hgvsp: ENSP00000455187.1:p.Arg183Gln
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.75G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.473G>A
  hgvsp: ENSP00000438143.2:p.Arg158Gln
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.364G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.203G>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.257G>A
  hgvsp: ENSP00000434594.1:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.548G>A
  hgvsp: ENSP00000414334.2:p.Arg183Gln
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg183Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-66551110-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551110
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551110
    reference: chr 16
allele count: 11
allele frequency: 9.060209208467177e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.400C>T
  hgvsp: ENSP00000440898.1:p.Arg134Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.256C>T
  hgvsp: ENSP00000434594.1:p.Arg86Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.547C>T
  hgvsp: ENSP00000414334.2:p.Arg183Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.256C>T
  hgvsp: ENSP00000433770.1:p.Arg86Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.673C>T
  hgvsp: ENSP00000299697.7:p.Arg225Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.106C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.202C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.454C>T
  hgvsp: ENSP00000435312.1:p.Arg152Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.256C>T
  hgvsp: ENSP00000462341.1:p.Arg86Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463326
  ensembl transcript: ENST00000562484
  gene symbol: TK2
  hgvsc: ENST00000562484.2:c.256C>T
  hgvsp: ENSP00000463326.1:p.Arg86Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.547C>T
  hgvsp: ENSP00000455187.1:p.Arg183Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.493C>T
  hgvsp: ENSP00000407469.3:p.Arg165Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.256C>T
  hgvsp: ENSP00000463560.1:p.Arg86Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.363C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3396C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.472C>T
  hgvsp: ENSP00000438143.2:p.Arg158Trp
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.74C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*405C>T
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg183Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

16-66551110-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551110
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551110
    reference: chr 16
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463326
  ensembl transcript: ENST00000562484
  gene symbol: TK2
  hgvsc: ENST00000562484.2:c.256C>G
  hgvsp: ENSP00000463326.1:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.472C>G
  hgvsp: ENSP00000438143.2:p.Arg158Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.74C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.493C>G
  hgvsp: ENSP00000407469.3:p.Arg165Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.256C>G
  hgvsp: ENSP00000433770.1:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.256C>G
  hgvsp: ENSP00000463560.1:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3396C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.256C>G
  hgvsp: ENSP00000462341.1:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.400C>G
  hgvsp: ENSP00000440898.1:p.Arg134Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.202C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*405C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.547C>G
  hgvsp: ENSP00000414334.2:p.Arg183Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.547C>G
  hgvsp: ENSP00000455187.1:p.Arg183Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.106C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.673C>G
  hgvsp: ENSP00000299697.7:p.Arg225Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.454C>G
  hgvsp: ENSP00000435312.1:p.Arg152Gly
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.363C>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.256C>G
  hgvsp: ENSP00000434594.1:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31097
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg183Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

16-66551110-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551110
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551110
    reference: chr 16
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.256C>A
  hgvsp: ENST00000527800.1:c.256C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.256C>A
  hgvsp: ENST00000563369.2:c.256C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*405C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.547C>A
  hgvsp: ENST00000451102.2:c.547C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463326
  ensembl transcript: ENST00000562484
  gene symbol: TK2
  hgvsc: ENST00000562484.2:c.256C>A
  hgvsp: ENST00000562484.2:c.256C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.472C>A
  hgvsp: ENST00000545043.2:c.472C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.256C>A
  hgvsp: ENST00000563478.1:c.256C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3396C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.400C>A
  hgvsp: ENST00000544898.1:c.400C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.454C>A
  hgvsp: ENST00000527284.1:c.454C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.202C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.74C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.547C>A
  hgvsp: ENST00000564917.1:c.547C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.493C>A
  hgvsp: ENST00000417693.3:c.493C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.256C>A
  hgvsp: ENST00000525974.1:c.256C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.363C>A
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.106C>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.673C>A
  hgvsp: ENST00000299697.7:c.673C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11831
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg183Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

16-66551137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551137
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551137
    reference: chr 16
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3423C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.446-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.665-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.248-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.79C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.485-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.47C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.248-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.248-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*397-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.539-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.539-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.392-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.355-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.194-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463326
  ensembl transcript: ENST00000562484
  gene symbol: TK2
  hgvsc: ENST00000562484.2:c.248-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.464-19C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.248-19C>T
  variant of: http://identifiers.org/hgnc/11831
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31092
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

16-66551138-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551138
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551138
    reference: chr 16
allele count: 269
allele frequency: 2.215851990971845e-3
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.248-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463326
  ensembl transcript: ENST00000562484
  gene symbol: TK2
  hgvsc: ENST00000562484.2:c.248-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.539-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3424A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.392-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.248-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.446-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.464-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.194-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.46A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.665-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.78A>G
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.248-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.248-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*397-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.485-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.355-20A>G
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.539-20A>G
  variant of: http://identifiers.org/hgnc/11831
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 2
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

16-66551140-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66551140
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 66551140
    reference: chr 16
allele count: 9
allele frequency: 7.413753336189001e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000414334
  ensembl transcript: ENST00000451102
  gene symbol: TK2
  hgvsc: ENST00000451102.2:c.539-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000433770
  ensembl transcript: ENST00000527800
  gene symbol: TK2
  hgvsc: ENST00000527800.1:c.248-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000457959
  ensembl transcript: ENST00000567357
  gene symbol: TK2
  hgvsc: ENST00000567357.1:c.*397-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000562552
  gene symbol: TK2
  hgvsc: ENST00000562552.1:n.355-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000440898
  ensembl transcript: ENST00000544898
  gene symbol: TK2
  hgvsc: ENST00000544898.1:c.392-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000434594
  ensembl transcript: ENST00000525974
  gene symbol: TK2
  hgvsc: ENST00000525974.1:c.248-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463326
  ensembl transcript: ENST00000562484
  gene symbol: TK2
  hgvsc: ENST00000562484.2:c.248-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000407469
  ensembl transcript: ENST00000417693
  gene symbol: TK2
  hgvsc: ENST00000417693.3:c.485-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000563099
  gene symbol: TK2
  hgvsc: ENST00000563099.1:n.44C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260851
  ensembl transcript: ENST00000561527
  gene symbol: RP11-403P17.5
  hgvsc: ENST00000561527.1:n.76C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000455187
  ensembl transcript: ENST00000564917
  gene symbol: TK2
  hgvsc: ENST00000564917.1:c.539-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000299697
  ensembl transcript: ENST00000299697
  gene symbol: TK2
  hgvsc: ENST00000299697.7:c.665-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000463560
  ensembl transcript: ENST00000563369
  gene symbol: TK2
  hgvsc: ENST00000563369.2:c.248-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000462341
  ensembl transcript: ENST00000563478
  gene symbol: TK2
  hgvsc: ENST00000563478.1:c.248-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl transcript: ENST00000564792
  gene symbol: TK2
  hgvsc: ENST00000564792.1:n.194-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000438143
  ensembl transcript: ENST00000545043
  gene symbol: TK2
  hgvsc: ENST00000545043.2:c.464-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000435312
  ensembl transcript: ENST00000527284
  gene symbol: TK2
  hgvsc: ENST00000527284.1:c.446-22C>T
  variant of: http://identifiers.org/hgnc/11831
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166548
  ensembl protein: ENSP00000464313
  ensembl transcript: ENST00000569718
  gene symbol: TK2
  hgvsc: ENST00000569718.1:c.344-3426C>T
  variant of: http://identifiers.org/hgnc/11831
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 5.727991980811227e-4
allele num: 55866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.234e0

MQ
type: SiteQuality
SIO_000300: 4.598e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.622e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

DP
type: SiteQuality
SIO_000300: 1.13495e6

FS
type: SiteQuality
SIO_000300: 2.898e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 9.33e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.84931506849315e-5
allele num: 14600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.789997494003508e-5
allele num: 55866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.898e0

QD
type: SiteQuality
SIO_000300: 9.33e0

DP
type: SiteQuality
SIO_000300: 1.13495e6

MQ
type: SiteQuality
SIO_000300: 4.598e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: -3.234e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.622e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.203e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.46e-1

DP
type: SiteQuality
SIO_000300: 1.25468e6

MQRankSum
type: SiteQuality
SIO_000300: -3.236e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.630000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

MQ
type: SiteQuality
SIO_000300: 5.352e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

VQSLOD
type: SiteQuality
SIO_000300: 2.99e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.338927073105418e-4
allele num: 44812
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.063e0

QD
type: SiteQuality
SIO_000300: 1.246e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.91e-2

MQ
type: SiteQuality
SIO_000300: 4.123e1

FS
type: SiteQuality
SIO_000300: 1.71e0

MQRankSum
type: SiteQuality
SIO_000300: -1.135e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-2

DP
type: SiteQuality
SIO_000300: 1.307764e6

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.231545121842364e-5
allele num: 44812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.91e-2

MQ
type: SiteQuality
SIO_000300: 4.123e1

DP
type: SiteQuality
SIO_000300: 1.307764e6

MQRankSum
type: SiteQuality
SIO_000300: -1.135e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.063e0

QD
type: SiteQuality
SIO_000300: 1.246e1

African
type: Population
allele count: 1
allele frequency: 1.060895395713983e-4
allele num: 9426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.190505056950515e-5
allele num: 62686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.3e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

MQRankSum
type: SiteQuality
SIO_000300: 8.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.639e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

DP
type: SiteQuality
SIO_000300: 1.384962e6

FS
type: SiteQuality
SIO_000300: 1.0599e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.198e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.775549188156638e-5
allele num: 62820
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

MQ
type: SiteQuality
SIO_000300: 5.662e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.299e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

DP
type: SiteQuality
SIO_000300: 1.396574e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.960573476702509e-5
allele num: 11160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5680
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

DP
type: SiteQuality
SIO_000300: 1.396574e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.299e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567299855808413e-5
allele num: 63804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e0

DP
type: SiteQuality
SIO_000300: 1.434503e6

VQSLOD
type: SiteQuality
SIO_000300: 5.81e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

FS
type: SiteQuality
SIO_000300: 3.934e0

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

QD
type: SiteQuality
SIO_000300: 1.744e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.175889328063241e-5
allele num: 16192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.33e-1

MQ
type: SiteQuality
SIO_000300: 5.385e1

VQSLOD
type: SiteQuality
SIO_000300: -8.914e-1

DP
type: SiteQuality
SIO_000300: 1.448754e6

FS
type: SiteQuality
SIO_000300: 1.1097e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.658e0

South Asian
type: Population
allele count: 1
allele frequency: 6.167509559639817e-5
allele num: 16214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.451923e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.469e-1

FS
type: SiteQuality
SIO_000300: 1.222e0

MQ
type: SiteQuality
SIO_000300: 5.703e1

QD
type: SiteQuality
SIO_000300: 1.298e1

East Asian
type: Population
allele count: 3
allele frequency: 3.493246390312063e-4
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16234
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.27e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.54e-1

DP
type: SiteQuality
SIO_000300: 1.452277e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 2.872e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.02e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55269859014968e-5
allele num: 64404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.223e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.89e-1

DP
type: SiteQuality
SIO_000300: 1.458077e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.479e0

MQ
type: SiteQuality
SIO_000300: 5.808e1

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -2.677e0

FS
type: SiteQuality
SIO_000300: 1.085e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.87e-1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553663538624075e-5
allele num: 64364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.919444102816382e-4
allele num: 16262
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.018744906275469e-4
allele num: 9816
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.415e-1

MQ
type: SiteQuality
SIO_000300: 5.846e1

FS
type: SiteQuality
SIO_000300: 3.337e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.19e-1

DP
type: SiteQuality
SIO_000300: 1.458359e6

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

QD
type: SiteQuality
SIO_000300: 1.309e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.661570016781652e-5
allele num: 64356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5888
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 3.013e0

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.458381e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.786e0

QD
type: SiteQuality
SIO_000300: 8.779999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.7e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.54e-1

African
type: Population
allele count: 1
allele frequency: 1.02082482645978e-4
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.159152500615915e-5
allele num: 16236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64250
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.456647e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

MQ
type: SiteQuality
SIO_000300: 5.653e1

VQSLOD
type: SiteQuality
SIO_000300: -1.69e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

FS
type: SiteQuality
SIO_000300: 1.689e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64254
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.109339873288372e-4
allele num: 9786
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 1.457463e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559965056782728e-5
allele num: 64104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 7.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

MQ
type: SiteQuality
SIO_000300: 5.55e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.009e0

VQSLOD
type: SiteQuality
SIO_000300: -1.356e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.453262e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563330519338399e-5
allele num: 63966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.69e0

FS
type: SiteQuality
SIO_000300: 2.251e0

DP
type: SiteQuality
SIO_000300: 1.450293e6

VQSLOD
type: SiteQuality
SIO_000300: -1.556e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563966218329684e-5
allele num: 63940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.273e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 1.45032e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63940
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.173708920187793e-3
allele num: 852
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

FS
type: SiteQuality
SIO_000300: 1.134e0

DP
type: SiteQuality
SIO_000300: 1.45032e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 1.273e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.27293542012985e-5
allele num: 63766
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.903133903133904e-5
allele num: 11232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

FS
type: SiteQuality
SIO_000300: 3.351e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

QD
type: SiteQuality
SIO_000300: 1.022e1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.843e1

DP
type: SiteQuality
SIO_000300: 1.446809e6

VQSLOD
type: SiteQuality
SIO_000300: -1.72e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568578240682645e-5
allele num: 63752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.032631144155308e-4
allele num: 9684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.08e-1

FS
type: SiteQuality
SIO_000300: 2.72e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

DP
type: SiteQuality
SIO_000300: 1.446819e6

MQ
type: SiteQuality
SIO_000300: 5.855e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

VQSLOD
type: SiteQuality
SIO_000300: -5.069e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.195e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.245019920318725e-4
allele num: 16064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.446819e6

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.069e-1

FS
type: SiteQuality
SIO_000300: 2.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
SIO_000300: 1.195e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.08e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.71342383107089e-5
allele num: 63648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 9.91e0

VQSLOD
type: SiteQuality
SIO_000300: -1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.088e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 7.077e0

DP
type: SiteQuality
SIO_000300: 1.442687e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 5.596e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57114127702363e-5
allele num: 63648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.596e1

DP
type: SiteQuality
SIO_000300: 1.442687e6

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 7.077e0

VQSLOD
type: SiteQuality
SIO_000300: -1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

QD
type: SiteQuality
SIO_000300: 9.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.088e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.32351081320349e-5
allele num: 15814
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.409e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.141e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

DP
type: SiteQuality
SIO_000300: 1.424548e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 3.144e0

VQSLOD
type: SiteQuality
SIO_000300: -1.203e0

MQ
type: SiteQuality
SIO_000300: 5.75e1

MQRankSum
type: SiteQuality
SIO_000300: 7.46e-1

African
type: Population
allele count: 10
allele frequency: 1.051745898190997e-3
allele num: 9508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.111958317448214e-4
allele num: 62952
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.192e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.771e1

DP
type: SiteQuality
SIO_000300: 1.425722e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.45e-1

Latino
type: Population
allele count: 11
allele frequency: 1.043247344461305e-3
allele num: 10544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 466
allele frequency: 7.79759713530337e-3
allele num: 59762
num of homozygotes: 0

South Asian
type: Population
allele count: 43
allele frequency: 2.870493991989319e-3
allele num: 14980
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 6.297229219143577e-3
allele num: 794
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

FS
type: SiteQuality
SIO_000300: 1.223e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.32129e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: 4.41e-1

MQ
type: SiteQuality
SIO_000300: 5.62e1

QD
type: SiteQuality
SIO_000300: 1.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

Other
type: Population
allele count: 1
allele frequency: 1.259445843828715e-3
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59586
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.23613595706619e-4
allele num: 8944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10540
num of homozygotes: 0

East Asian
type: Population
allele count: 35
allele frequency: 4.2997542997543e-3
allele num: 8140
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

DP
type: SiteQuality
SIO_000300: 1.31426e6

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.159e0

QD
type: SiteQuality
SIO_000300: 1.177e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.944e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.346076187912236e-4
allele num: 14858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.385813441679363e-5
allele num: 59070
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.066e1

FS
type: SiteQuality
SIO_000300: 8.88e-1

DP
type: SiteQuality
SIO_000300: 1.292069e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14838
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 1.2374e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

DP
type: SiteQuality
SIO_000300: 1.29094e6

VQSLOD
type: SiteQuality
SIO_000300: -1.891e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.279e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

QD
type: SiteQuality
SIO_000300: 6.41e0

South Asian
type: Population
allele count: 1
allele frequency: 6.981290142418318e-5
allele num: 14324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.883997928534438e-4
allele num: 7724
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e0

FS
type: SiteQuality
SIO_000300: 1.678e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

QD
type: SiteQuality
SIO_000300: 1.222e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

DP
type: SiteQuality
SIO_000300: 1.217885e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55132
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.350621285791464e-4
allele num: 7404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.161e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

QD
type: SiteQuality
SIO_000300: 6.83e0

DP
type: SiteQuality
SIO_000300: 1.153029e6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54778
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.191140514885661e-5
allele num: 13906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.267e0

DP
type: SiteQuality
SIO_000300: 1.141076e6

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

VQSLOD
type: SiteQuality
SIO_000300: -1.667e0

FS
type: SiteQuality
SIO_000300: 3.468e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.279e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 53594
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7090
num of homozygotes: 0

QD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.02e0

ClippingRankSum
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FS
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MQ
type: SiteQuality
SIO_000300: 5.899e1

BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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SIO_000300: -4.0e-3

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12206
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.315097317201473e-4
allele num: 7604
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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ClippingRankSum
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QD
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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European (Non-Finnish)
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allele frequency: 2.218081802856889e-5
allele num: 45084
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 2.15e0

MQ
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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FS
type: SiteQuality
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QD
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InbreedingCoeff
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SIO_000300: -1.12e-2

ReadPosRankSum
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SIO_000300: -1.852e0

Other
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allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

East Asian
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

MQRankSum
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VQSLOD
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QD
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FS
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SIO_000300: 0.0e0

ReadPosRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -1.15e-2

DP
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SIO_000300: 8.11984e5

BaseQRankSum
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SIO_000300: -2.538e0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.295262578038928e-5
allele num: 43568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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QD
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

South Asian
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East Asian
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African
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allele frequency: 1.96196800482946e-3
allele num: 6626
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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QD
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Other
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.314921987129034e-5
allele num: 43198
num of homozygotes: 0

MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 4.7e-2

DP
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SIO_000300: 7.99105e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 31064
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -1.442e0

BaseQRankSum
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SIO_000300: -7.51e-1

MQRankSum
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InbreedingCoeff
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SIO_000300: -2.14e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.77615e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

QD
type: SiteQuality
SIO_000300: 2.759e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 5.090054815974941e-3
allele num: 5108
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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FS
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DP
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VQSLOD
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 1.470047776552738e-4
allele num: 27210
num of homozygotes: 0

VQSLOD
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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SIO_000300: -4.7e-1

MQRankSum
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DP
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ClippingRankSum
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SIO_000300: -3.61e-1

QD
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SIO_000300: 1.597e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele num: 2764
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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DP
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 2.020855225931614e-4
allele num: 24742
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.12534e5

ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

QD
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SIO_000300: 1.375e1

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -2.77e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2070
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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South Asian
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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African
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Other
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European (Finnish)
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MQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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DP
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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MQ
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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Latino
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South Asian
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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FS
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DP
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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InbreedingCoeff
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FS
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VQSLOD
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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African
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DP
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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Other
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African
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South Asian
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East Asian
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European (Finnish)
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ClippingRankSum
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DP
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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MQ
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DP
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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European (Non-Finnish)
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Other
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African
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East Asian
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South Asian
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Latino
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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MQ
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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European (Finnish)
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East Asian
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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QD
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DP
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ReadPosRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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BaseQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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FS
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MQ
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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African
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South Asian
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DP
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MQ
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QD
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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South Asian
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European (Finnish)
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East Asian
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MQ
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European (Finnish)
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Latino
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South Asian
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African
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East Asian
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -4.358e0

MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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African
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Other
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MQ
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ReadPosRankSum
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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Latino
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South Asian
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allele num: 16512
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African
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Other
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QD
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SIO_000300: 1.382e1

MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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Latino
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allele frequency: 6.909656244601831e-4
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European (Non-Finnish)
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European (Finnish)
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East Asian
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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