11-117973949-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117973949
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117973949
    reference: chr 11
allele count: 4
allele frequency: 3.304692663582287e-5
allele num: 121040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.190C>T
  hgvsp: ENST00000517544.1:c.190C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1457C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.291C>T
  hgvsp: ENST00000437212.3:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.171C>T
  hgvsp: ENST00000523251.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-136C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.295C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.291C>T
  hgvsp: ENST00000522824.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.285C>T
  hgvsp: ENST00000519236.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.285C>T
  hgvsp: ENST00000534111.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*115C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.169C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro97Pro
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

11-117973950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117973950
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117973950
    reference: chr 11
allele count: 2
allele frequency: 1.652482855490374e-5
allele num: 121030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.296G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.286G>A
  hgvsp: ENSP00000429889.1:p.Glu96Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.292G>A
  hgvsp: ENSP00000416037.3:p.Glu98Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1456G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.286G>A
  hgvsp: ENSP00000435184.1:p.Glu96Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.292G>A
  hgvsp: ENSP00000430547.1:p.Glu98Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-135G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.170G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.172G>A
  hgvsp: ENSP00000429209.1:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.191G>A
  hgvsp: ENSP00000429833.1:p.Glu65Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*116G>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu98Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

11-117973952-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117973952
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117973952
    reference: chr 11
allele count: 1
allele frequency: 8.267332462507647e-6
allele num: 120958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.298A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.288A>G
  hgvsp: ENST00000534111.1:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.193A>G
  hgvsp: ENST00000517544.1:c.193A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.294A>G
  hgvsp: ENST00000522824.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*118A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-133A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.288A>G
  hgvsp: ENST00000519236.1:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.174A>G
  hgvsp: ENST00000523251.1:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1454A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.294A>G
  hgvsp: ENST00000437212.3:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.172A>G
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu98Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

11-117973956-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117973956
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117973956
    reference: chr 11
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1450C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.298C>T
  hgvsp: ENSP00000430547.1:p.Pro100Ser
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-129C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*122C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.178C>T
  hgvsp: ENSP00000429209.1:p.Pro60Ser
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.292C>T
  hgvsp: ENSP00000429889.1:p.Pro98Ser
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.197C>T
  hgvsp: ENSP00000429833.1:p.Pro67Ser
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.292C>T
  hgvsp: ENSP00000435184.1:p.Pro98Ser
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.298C>T
  hgvsp: ENSP00000416037.3:p.Pro100Ser
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.176C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.302C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro100Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-117973965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117973965
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117973965
    reference: chr 11
allele count: 5
allele frequency: 4.149721968628102e-5
allele num: 120490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-120G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.301G>A
  hgvsp: ENSP00000435184.1:p.Ala101Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1441G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.187G>A
  hgvsp: ENSP00000429209.1:p.Ala63Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.185G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.301G>A
  hgvsp: ENSP00000429889.1:p.Ala101Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*131G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.307G>A
  hgvsp: ENSP00000416037.3:p.Ala103Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.307G>A
  hgvsp: ENSP00000430547.1:p.Ala103Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.206G>A
  hgvsp: ENSP00000429833.1:p.Ala70Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.311G>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala103Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

11-117973969-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117973969
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117973969
    reference: chr 11
allele count: 1
allele frequency: 8.300821781356355e-6
allele num: 120470
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.190+1G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.310+1G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-117+1G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.310+1G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.209+1G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*134+1G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.188+1G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1437G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.304+1G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.304+1G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.314+1G>C
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
hgvs: c.310+1G>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-117973970-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117973970
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117973970
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 120074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.209+2T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*134+2T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1436T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.304+2T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.310+2T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.188+2T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.314+2T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.310+2T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.304+2T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-117+2T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.190+2T>G
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
hgvs: c.310+2T>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

11-117973979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117973979
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117973979
    reference: chr 11
allele count: 2
allele frequency: 1.664447403462051e-5
allele num: 120160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.209+11G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*134+11G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.304+11G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.314+11G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.310+11G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.188+11G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.310+11G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.304+11G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.190+11G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-117+11G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1427G>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

11-117973989-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117973989
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117973989
    reference: chr 11
allele count: 1
allele frequency: 8.337085021593051e-6
allele num: 119946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.304+21A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*134+21A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.188+21A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.310+21A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.190+21A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.310+21A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1417A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.209+21A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.314+21A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-117+21A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.304+21A>G
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

11-117973998-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117973998
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117973998
    reference: chr 11
allele count: 1
allele frequency: 8.352404657300837e-6
allele num: 119726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.209+30G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-117+30G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.190+30G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.310+30G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.310+30G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1408G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.304+30G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.304+30G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*134+30G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.188+30G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.314+30G>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

11-117974006-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117974006
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117974006
    reference: chr 11
allele count: 4
allele frequency: 3.349747094094396e-5
allele num: 119412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1400A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.310+38A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*134+38A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.310+38A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.190+38A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.304+38A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.188+38A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-117+38A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.209+38A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.304+38A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.314+38A>G
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

11-117974010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117974010
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117974010
    reference: chr 11
allele count: 7
allele frequency: 5.868938225233081e-5
allele num: 119272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.304+42G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.304+42G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.209+42G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-117+42G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.310+42G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.314+42G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-1396G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.310+42G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.190+42G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*134+42G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.188+42G>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

11-117975368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975368
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975368
    reference: chr 11
allele count: 3
allele frequency: 2.482786016949153e-5
allele num: 120832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.305-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.189-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.315-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.305-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-116-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.210-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.311-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.311-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*135-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.191-38C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-117975369-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975369
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975369
    reference: chr 11
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-37C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.305-37C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.311-37C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.305-37C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.191-37C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.210-37C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.311-37C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.189-37C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.315-37C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*135-37C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-116-37C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15615
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-117975370-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975370
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975370
    reference: chr 11
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-36C>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.315-36C>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.311-36C>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*135-36C>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.311-36C>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.210-36C>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.305-36C>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.189-36C>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.191-36C>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-116-36C>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.305-36C>G
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

11-117975370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975370
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975370
    reference: chr 11
allele count: 16
allele frequency: 1.322182924007536e-4
allele num: 121012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.191-36C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.305-36C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-36C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.311-36C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.210-36C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*135-36C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.311-36C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.305-36C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-116-36C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.189-36C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.315-36C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29241
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15610
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

11-117975371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975371
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975371
    reference: chr 11
allele count: 1
allele frequency: 8.263097008758882e-6
allele num: 121020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.210-35C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.315-35C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.189-35C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-116-35C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.305-35C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.305-35C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.311-35C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.191-35C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*135-35C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.311-35C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-35C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

11-117975372-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975372
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975372
    reference: chr 11
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.305-34C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.311-34C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.210-34C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-116-34C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.305-34C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-34C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.189-34C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.311-34C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*135-34C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.191-34C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.315-34C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-117975374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975374
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975374
    reference: chr 11
allele count: 2
allele frequency: 1.652510162937502e-5
allele num: 121028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-32G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.311-32G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.189-32G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.210-32G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.305-32G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.311-32G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.191-32G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-116-32G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*135-32G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.305-32G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.315-32G>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

11-117975381-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975381
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975381
    reference: chr 11
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.191-25C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.189-25C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.311-25C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-25C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.210-25C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.311-25C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-116-25C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.315-25C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.305-25C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*135-25C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.305-25C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-117975388-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975388
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975388
    reference: chr 11
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.191-18A>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.305-18A>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.311-18A>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.210-18A>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.189-18A>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.311-18A>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.315-18A>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-18A>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.305-18A>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-116-18A>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*135-18A>C
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

11-117975390-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975390
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975390
    reference: chr 11
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.311-16G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*135-16G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.305-16G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.305-16G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.315-16G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.191-16G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.210-16G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-116-16G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.311-16G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-16G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.189-16G>C
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-117975399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975399
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975399
    reference: chr 11
allele count: 1
allele frequency: 8.252867871585376e-6
allele num: 121170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.191-7C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.305-7C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-116-7C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*135-7C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.210-7C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.152-7C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.315-7C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.311-7C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.189-7C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.311-7C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.305-7C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.311-7C>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS

11-117975408-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975408
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975408
    reference: chr 11
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.317C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.193C>T
  hgvsp: ENSP00000429209.1:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.212C>T
  hgvsp: ENSP00000429833.1:p.Arg72Cys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.191C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-114C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.313C>T
  hgvsp: ENSP00000416037.3:p.Arg105Cys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.307C>T
  hgvsp: ENSP00000435184.1:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.313C>T
  hgvsp: ENSP00000430547.1:p.Arg105Cys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.307C>T
  hgvsp: ENSP00000429889.1:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.154C>T
  hgvsp: ENSP00000428407.1:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15689
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg105Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

11-117975409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975409
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975409
    reference: chr 11
allele count: 8
allele frequency: 6.6003333168325e-5
allele num: 121206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.308G>A
  hgvsp: ENSP00000435184.1:p.Arg103His
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.314G>A
  hgvsp: ENSP00000416037.3:p.Arg105His
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.308G>A
  hgvsp: ENSP00000429889.1:p.Arg103His
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.194G>A
  hgvsp: ENSP00000429209.1:p.Arg65His
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.155G>A
  hgvsp: ENSP00000428407.1:p.Arg52His
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.314G>A
  hgvsp: ENSP00000430547.1:p.Arg105His
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-113G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.213G>A
  hgvsp: ENSP00000429833.1:p.Arg72His
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.318G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.192G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*138G>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg105His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-117975413-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975413
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975413
    reference: chr 11
allele count: 2
allele frequency: 1.649974425396406e-5
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.318C>T
  hgvsp: ENST00000522824.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.217C>T
  hgvsp: ENST00000517544.1:c.217C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.198C>T
  hgvsp: ENST00000523251.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.196C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-109C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.312C>T
  hgvsp: ENST00000534111.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.312C>T
  hgvsp: ENST00000519236.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.159C>T
  hgvsp: ENST00000522151.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.322C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.318C>T
  hgvsp: ENST00000437212.3:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*142C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu106Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/11-117975423-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975423
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975423
    reference: chr 11
allele count: 75
allele frequency: 6.186791612360384e-4
allele num: 121226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.328C>A
  hgvsp: ENST00000522824.1:c.328C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-99C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.322C>A
  hgvsp: ENST00000534111.1:c.322C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.208C>A
  hgvsp: ENST00000523251.1:c.208C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.332C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.328C>A
  hgvsp: ENST00000437212.3:c.328C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.322C>A
  hgvsp: ENST00000519236.1:c.322C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.227C>A
  hgvsp: ENST00000517544.1:c.227C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.169C>A
  hgvsp: ENST00000522151.1:c.169C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.206C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*152C>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15706
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Arg110Arg
num of homozygotes: 1
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

11-117975423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975423
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975423
    reference: chr 11
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.227C>T
  hgvsp: ENSP00000429833.1:p.Arg77Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.328C>T
  hgvsp: ENSP00000430547.1:p.Arg110Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.206C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.328C>T
  hgvsp: ENSP00000416037.3:p.Arg110Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.322C>T
  hgvsp: ENSP00000429889.1:p.Arg108Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.332C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-99C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.322C>T
  hgvsp: ENSP00000435184.1:p.Arg108Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.208C>T
  hgvsp: ENSP00000429209.1:p.Arg70Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*152C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.169C>T
  hgvsp: ENSP00000428407.1:p.Arg57Ter
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg110Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS

11-117975424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975424
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975424
    reference: chr 11
allele count: 2
allele frequency: 1.649783878311941e-5
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.209G>A
  hgvsp: ENSP00000429209.1:p.Arg70Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.323G>A
  hgvsp: ENSP00000429889.1:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-98G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.329G>A
  hgvsp: ENSP00000416037.3:p.Arg110Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.323G>A
  hgvsp: ENSP00000435184.1:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*153G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.228G>A
  hgvsp: ENSP00000429833.1:p.Arg77Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.329G>A
  hgvsp: ENSP00000430547.1:p.Arg110Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.207G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.170G>A
  hgvsp: ENSP00000428407.1:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.333G>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg110Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

11-117975436-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975436
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975436
    reference: chr 11
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.182A>G
  hgvsp: ENSP00000428407.1:p.Gln61Arg
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.335A>G
  hgvsp: ENSP00000429889.1:p.Gln112Arg
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*165A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.341A>G
  hgvsp: ENSP00000430547.1:p.Gln114Arg
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.221A>G
  hgvsp: ENSP00000429209.1:p.Gln74Arg
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-86A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.335A>G
  hgvsp: ENSP00000435184.1:p.Gln112Arg
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.341A>G
  hgvsp: ENSP00000416037.3:p.Gln114Arg
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.240A>G
  hgvsp: ENSP00000429833.1:p.Gln81Arg
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.219A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.345A>G
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln114Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-117975448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975448
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975448
    reference: chr 11
allele count: 2
allele frequency: 1.650573574317075e-5
allele num: 121170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.194C>T
  hgvsp: ENSP00000428407.1:p.Ser65Leu
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.252C>T
  hgvsp: ENSP00000429833.1:p.Ser85Leu
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.353C>T
  hgvsp: ENSP00000430547.1:p.Ser118Leu
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.353C>T
  hgvsp: ENSP00000416037.3:p.Ser118Leu
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.347C>T
  hgvsp: ENSP00000435184.1:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.347C>T
  hgvsp: ENSP00000429889.1:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.233C>T
  hgvsp: ENSP00000429209.1:p.Ser78Leu
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.357C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.231C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*177C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-74C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser118Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/11-117975448-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975448
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975448
    reference: chr 11
allele count: 2
allele frequency: 1.650573574317075e-5
allele num: 121170
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.353C>A
  hgvsp: ENSP00000416037.3:p.Ser118Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.252C>A
  hgvsp: ENSP00000429833.1:p.Ser85Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.194C>A
  hgvsp: ENSP00000428407.1:p.Ser65Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.357C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.233C>A
  hgvsp: ENSP00000429209.1:p.Ser78Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.347C>A
  hgvsp: ENSP00000429889.1:p.Ser116Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.353C>A
  hgvsp: ENSP00000430547.1:p.Ser118Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-74C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.347C>A
  hgvsp: ENSP00000435184.1:p.Ser116Ter
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*177C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.231C>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser118Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

11-117975449-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975449
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975449
    reference: chr 11
allele count: 21
allele frequency: 1.733216685099289e-4
allele num: 121162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.195G>A
  hgvsp: ENST00000522151.1:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.348G>A
  hgvsp: ENST00000534111.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.253G>A
  hgvsp: ENST00000517544.1:c.253G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.354G>A
  hgvsp: ENST00000522824.1:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.232G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*178G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.234G>A
  hgvsp: ENST00000523251.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.358G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.348G>A
  hgvsp: ENST00000519236.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-73G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.354G>A
  hgvsp: ENST00000437212.3:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15717
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser118Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-117975454-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975454
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975454
    reference: chr 11
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.258C>A
  hgvsp: ENSP00000429833.1:p.Thr87Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*183C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.353C>A
  hgvsp: ENSP00000435184.1:p.Thr118Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.200C>A
  hgvsp: ENSP00000428407.1:p.Thr67Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-68C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.239C>A
  hgvsp: ENSP00000429209.1:p.Thr80Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.359C>A
  hgvsp: ENSP00000430547.1:p.Thr120Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.353C>A
  hgvsp: ENSP00000429889.1:p.Thr118Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.359C>A
  hgvsp: ENSP00000416037.3:p.Thr120Lys
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.363C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.237C>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr120Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-117975456-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975456
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975456
    reference: chr 11
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.355G>T
  hgvsp: ENSP00000435184.1:p.Gly119Trp
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.260G>T
  hgvsp: ENSP00000429833.1:p.Gly88Trp
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.241G>T
  hgvsp: ENSP00000429209.1:p.Gly81Trp
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.355G>T
  hgvsp: ENSP00000429889.1:p.Gly119Trp
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-66G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.361G>T
  hgvsp: ENSP00000416037.3:p.Gly121Trp
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.365G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.361G>T
  hgvsp: ENSP00000430547.1:p.Gly121Trp
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.202G>T
  hgvsp: ENSP00000428407.1:p.Gly68Trp
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.239G>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*185G>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly121Trp
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

11-117975460-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975460
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975460
    reference: chr 11
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.245A>T
  hgvsp: ENSP00000429209.1:p.Asn82Ile
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.365A>T
  hgvsp: ENSP00000430547.1:p.Asn122Ile
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-62A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*189A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.264A>T
  hgvsp: ENSP00000429833.1:p.Asn89Ile
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.359A>T
  hgvsp: ENSP00000429889.1:p.Asn120Ile
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.359A>T
  hgvsp: ENSP00000435184.1:p.Asn120Ile
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.365A>T
  hgvsp: ENSP00000416037.3:p.Asn122Ile
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.243A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.369A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.206A>T
  hgvsp: ENSP00000428407.1:p.Asn69Ile
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn122Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-117975469-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975469
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975469
    reference: chr 11
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.215C>A
  hgvsp: ENSP00000428407.1:p.Ser72Tyr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*198C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.368C>A
  hgvsp: ENSP00000435184.1:p.Ser123Tyr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.252C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.368C>A
  hgvsp: ENSP00000429889.1:p.Ser123Tyr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.254C>A
  hgvsp: ENSP00000429209.1:p.Ser85Tyr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.378C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.374C>A
  hgvsp: ENSP00000430547.1:p.Ser125Tyr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.273C>A
  hgvsp: ENSP00000429833.1:p.Ser92Tyr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.374C>A
  hgvsp: ENSP00000416037.3:p.Ser125Tyr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-53C>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15690
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser125Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

11-117975476-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975476
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975476
    reference: chr 11
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*205T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.385T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.381T>C
  hgvsp: ENST00000437212.3:c.381T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.280T>C
  hgvsp: ENST00000517544.1:c.280T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.381T>C
  hgvsp: ENST00000522824.1:c.381T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.375T>C
  hgvsp: ENST00000519236.1:c.375T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.259T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.261T>C
  hgvsp: ENST00000523251.1:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.375T>C
  hgvsp: ENST00000534111.1:c.375T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.222T>C
  hgvsp: ENST00000522151.1:c.222T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys127Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

11-117975479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975479
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975479
    reference: chr 11
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.262C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.384C>T
  hgvsp: ENST00000522824.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.225C>T
  hgvsp: ENST00000522151.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.388C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.378C>T
  hgvsp: ENST00000519236.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.283C>T
  hgvsp: ENST00000517544.1:c.283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*208C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.378C>T
  hgvsp: ENST00000534111.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.264C>T
  hgvsp: ENST00000523251.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.384C>T
  hgvsp: ENST00000437212.3:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-43C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe128Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

11-117975480-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975480
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975480
    reference: chr 11
allele count: 9
allele frequency: 7.465534117490918e-5
allele num: 120554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.263G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.226G>A
  hgvsp: ENSP00000428407.1:p.Asp76Asn
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.379G>A
  hgvsp: ENSP00000429889.1:p.Asp127Asn
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-42G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.385G>A
  hgvsp: ENSP00000430547.1:p.Asp129Asn
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.379G>A
  hgvsp: ENSP00000435184.1:p.Asp127Asn
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.284G>A
  hgvsp: ENSP00000429833.1:p.Asp96Asn
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*209G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.385G>A
  hgvsp: ENSP00000416037.3:p.Asp129Asn
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.389G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.265G>A
  hgvsp: ENSP00000429209.1:p.Asp89Asn
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp129Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

11-117975492-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975492
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975492
    reference: chr 11
allele count: 1
allele frequency: 8.357430591538938e-6
allele num: 119654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.296G>C
  hgvsp: ENSP00000429833.1:p.Glu100Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.277G>C
  hgvsp: ENSP00000429209.1:p.Glu93Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-30G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.391G>C
  hgvsp: ENSP00000429889.1:p.Glu131Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.397G>C
  hgvsp: ENSP00000416037.3:p.Glu133Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.238G>C
  hgvsp: ENSP00000428407.1:p.Glu80Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.275G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*221G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.397G>C
  hgvsp: ENSP00000430547.1:p.Glu133Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.391G>C
  hgvsp: ENSP00000435184.1:p.Glu131Gln
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.401G>C
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu133Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

11-117975500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975500
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975500
    reference: chr 11
allele count: 6
allele frequency: 5.042101547925175e-5
allele num: 118998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.405C>T
  hgvsp: ENST00000522824.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*229C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.304C>T
  hgvsp: ENST00000517544.1:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.409C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.405C>T
  hgvsp: ENST00000437212.3:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.399C>T
  hgvsp: ENST00000534111.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.399C>T
  hgvsp: ENST00000519236.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.285C>T
  hgvsp: ENST00000523251.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.283C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.246C>T
  hgvsp: ENST00000522151.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15159
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu135Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

11-117975501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975501
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975501
    reference: chr 11
allele count: 4
allele frequency: 3.364850768868401e-5
allele num: 118876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.410G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.286G>A
  hgvsp: ENSP00000429209.1:p.Ala96Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.400G>A
  hgvsp: ENSP00000429889.1:p.Ala134Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.406G>A
  hgvsp: ENSP00000430547.1:p.Ala136Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.305G>A
  hgvsp: ENSP00000429833.1:p.Ala103Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.406G>A
  hgvsp: ENSP00000416037.3:p.Ala136Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.247G>A
  hgvsp: ENSP00000428407.1:p.Ala83Thr
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*230G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.284G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.400G>A
  hgvsp: ENSP00000435184.1:p.Ala134Thr
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala136Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-117975510-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975510
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975510
    reference: chr 11
allele count: 1
allele frequency: 8.463817181548878e-6
allele num: 118150
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.409G>C
  hgvsp: ENSP00000429889.1:p.Ala137Pro
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.419G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.314G>C
  hgvsp: ENSP00000429833.1:p.Ala106Pro
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.293G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.256G>C
  hgvsp: ENSP00000428407.1:p.Ala86Pro
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.415G>C
  hgvsp: ENSP00000416037.3:p.Ala139Pro
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.415G>C
  hgvsp: ENSP00000430547.1:p.Ala139Pro
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.295G>C
  hgvsp: ENSP00000429209.1:p.Ala99Pro
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*239G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-12G>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.409G>C
  hgvsp: ENSP00000435184.1:p.Ala137Pro
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala139Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/11-117975512-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975512
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975512
    reference: chr 11
allele count: 5
allele frequency: 4.241457704183774e-5
allele num: 117884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.-10C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.297C>A
  hgvsp: ENST00000523251.1:c.297C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.258C>A
  hgvsp: ENST00000522151.1:c.258C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.417C>A
  hgvsp: ENST00000437212.3:c.417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.411C>A
  hgvsp: ENST00000534111.1:c.411C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.421C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.417C>A
  hgvsp: ENST00000522824.1:c.417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.411C>A
  hgvsp: ENST00000519236.1:c.411C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*241C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.316C>A
  hgvsp: ENST00000517544.1:c.316C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.295C>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27855
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala139Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

11-117975530-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975530
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975530
    reference: chr 11
allele count: 2
allele frequency: 1.729296003596936e-5
allele num: 115654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.315C>T
  hgvsp: ENST00000523251.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.435C>T
  hgvsp: ENST00000522824.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.313C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.276C>T
  hgvsp: ENST00000522151.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.435C>T
  hgvsp: ENST00000437212.3:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.429C>T
  hgvsp: ENST00000519236.1:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.429C>T
  hgvsp: ENST00000534111.1:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*259C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.9C>T
  hgvsp: ENST00000522307.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.334C>T
  hgvsp: ENST00000517544.1:c.334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.439C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26285
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr145Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-117975545-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975545
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975545
    reference: chr 11
allele count: 3
allele frequency: 2.670084374666239e-5
allele num: 112356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.434+10C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*264+10C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.434+10C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.339+10C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.440+10C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.14+10C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.281+10C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.440+10C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.318+10C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.320+10C>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.444+10C>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12560
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26813
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

11-117975545-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975545
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975545
    reference: chr 11
allele count: 1
allele frequency: 8.900281248887465e-6
allele num: 112356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*264+10C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.434+10C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.440+10C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.339+10C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.440+10C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.444+10C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.281+10C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.320+10C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.318+10C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.434+10C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.14+10C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22470
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-117975546-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975546
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975545
    reference: chr 11
allele count: 12
allele frequency: 1.068319000053416e-4
allele num: 112326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.281+14delG
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.339+14delG
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.434+14delG
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.440+14delG
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.14+14delG
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.440+14delG
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.434+14delG
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*264+14delG
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.320+14delG
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.318+14delG
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.444+14delG
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22468
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27185
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: TG
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

11-117975549-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975549
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975549
    reference: chr 11
allele count: 1
allele frequency: 8.941024999105897e-6
allele num: 111844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.440+14G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.434+14G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*264+14G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.434+14G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.339+14G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.320+14G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.440+14G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.444+14G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.14+14G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.281+14G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.318+14G>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11940
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

11-117975557-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975557
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975559
    reference: chr 11
allele count: 1
allele frequency: 9.096697898662786e-6
allele num: 109930
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.281+22_281+23insTT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.14+22_14+23insTT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.320+22_320+23insTT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*264+22_*264+23insTT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.444+22_444+23insTT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.440+22_440+23insTT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.440+22_440+23insTT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.318+22_318+23insTT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.434+22_434+23insTT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.339+22_339+23insTT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.434+22_434+23insTT
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

11-117975564-CCCTCCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975564
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975557
    reference: chr 11
allele count: 1
allele frequency: 9.217099563109481e-6
allele num: 108494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.14+43_14+49delTCCTCCT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.281+43_281+49delTCCTCCT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.440+43_440+49delTCCTCCT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.440+43_440+49delTCCTCCT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*264+43_*264+49delTCCTCCT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.339+43_339+49delTCCTCCT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.434+43_434+49delTCCTCCT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.444+43_444+49delTCCTCCT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.434+43_434+49delTCCTCCT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.318+43_318+49delTCCTCCT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.320+43_320+49delTCCTCCT
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 9453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14199
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: CCCTCCTT
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

11-117975576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975576
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975576
    reference: chr 11
allele count: 3975
allele frequency: 3.982407277536217e-2
allele num: 99814
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.440+41C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.318+41C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.14+41C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.434+41C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.444+41C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.339+41C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.320+41C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.440+41C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.281+41C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.434+41C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*264+41C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 7.5e0
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 1.25e1
  variant carriers: 643
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 2.75e1
  variant carriers: 497
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16836
  bin: 1.75e1
  variant carriers: 1005
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 3.25e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9741
  bin: 2.25e1
  variant carriers: 941
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 2.5e0
  variant carriers: 6
num of homozygotes: 215
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

11-117975577-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975577
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975577
    reference: chr 11
allele count: 1
allele frequency: 1.005085733813094e-5
allele num: 99494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.434+42T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.440+42T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.281+42T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.14+42T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.444+42T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.339+42T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.320+42T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.318+42T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*264+42T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.440+42T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.434+42T>C
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10667
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-117975583-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975583
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975583
    reference: chr 11
allele count: 1
allele frequency: 1.003935426873344e-5
allele num: 99608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.440+48C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.339+48C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*264+48C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.434+48C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.440+48C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.281+48C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.444+48C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.434+48C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.320+48C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.318+48C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.14+48C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14919
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11309
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS

11-117975584-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117975584
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117975584
    reference: chr 11
allele count: 2
allele frequency: 2.02020202020202e-5
allele num: 99000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.434+49T>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.339+49T>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.434+49T>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.444+49T>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.440+49T>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.281+49T>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.320+49T>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.440+49T>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.318+49T>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.14+49T>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*264+49T>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14890
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6960
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

11-117978444-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117978444
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117978444
    reference: chr 11
allele count: 11
allele frequency: 1.056229835612229e-4
allele num: 104144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.319-45C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.435-45C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.441-45C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.321-45C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.445-45C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.2163C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.441-60C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.340-45C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.282-45C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.435-45C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*265-45C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.15-60C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10896
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17725
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14683
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

11-117978446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117978446
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117978446
    reference: chr 11
allele count: 1
allele frequency: 9.527802126605435e-6
allele num: 104956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.435-43C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.441-58C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.441-43C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.2165C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*265-43C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.340-43C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.435-43C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.321-43C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.319-43C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.15-58C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.282-43C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.445-43C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17254
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

11-117978447-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117978447
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117978447
    reference: chr 11
allele count: 106
allele frequency: 1.007106753315852e-3
allele num: 105252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*265-42C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.340-42C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.441-42C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.2166C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.441-57C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.319-42C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.435-42C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.282-42C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.321-42C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.435-42C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.445-42C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.15-57C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 16619
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18341
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-117978451-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117978451
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117978451
    reference: chr 11
allele count: 2
allele frequency: 1.882140370028797e-5
allele num: 106262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.441-53C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.441-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.445-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.340-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.282-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.15-53C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.321-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.2170C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*265-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.435-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.319-38C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.435-38C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13876
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

11-117979563-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117979563
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117979563
    reference: chr 11
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.537-8T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.3282T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*367-8T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.384-8T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.543-8T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.547-8T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.528-8T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.423-8T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.537-8T>C
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.102-8T>C
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: c.543-8T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

11-117978459-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117978459
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117978459
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 109866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.282-30A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.445-30A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.15-45A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.340-30A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.435-30A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*265-30A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.2178A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.435-30A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.321-30A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.441-30A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.441-45A>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.319-30A>T
  variant of: http://identifiers.org/hgnc/11878
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

11-117978473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117978473
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117978473
    reference: chr 11
allele count: 1
allele frequency: 8.620689655172414e-6
allele num: 116000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.282-16C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.340-16C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.321-16C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.2192C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.319-16C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.441-16C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.445-16C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.435-16C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.441-31C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.15-31C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*265-16C>T
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.435-16C>T
  variant of: http://identifiers.org/hgnc/11878
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39787
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

11-117978479-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117978479
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117978478
    reference: chr 11
allele count: 2
allele frequency: 1.696266517395213e-5
allele num: 117906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.319-9delT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.435-9delT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.2199delT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.441-9delT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.435-9delT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.340-9delT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.441-24delT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.282-9delT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*265-9delT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.321-9delT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.15-24delT
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.445-9delT
  variant of: http://identifiers.org/hgnc/11878
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: AT
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

11-117978480-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117978480
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117978480
    reference: chr 11
allele count: 1
allele frequency: 8.467400508044031e-6
allele num: 118100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.319-9T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.441-9T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.435-9T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.321-9T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.2199T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.445-9T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.435-9T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.282-9T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*265-9T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.15-24T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.340-9T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.441-24T>G
  variant of: http://identifiers.org/hgnc/11878
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11532
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

11-117978496-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117978496
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117978496
    reference: chr 11
allele count: 2
allele frequency: 1.6632569898375e-5
allele num: 120246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.328A>G
  hgvsp: ENSP00000429209.1:p.Thr110Ala
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.452A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.441-8A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.326A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.289A>G
  hgvsp: ENSP00000428407.1:p.Thr97Ala
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.15-8A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.2215A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*272A>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.347A>G
  hgvsp: ENSP00000429833.1:p.Thr117Ala
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.442A>G
  hgvsp: ENSP00000435184.1:p.Thr148Ala
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.448A>G
  hgvsp: ENSP00000416037.3:p.Thr150Ala
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.442A>G
  hgvsp: ENSP00000429889.1:p.Thr148Ala
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr150Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

11-117978508-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117978508
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117978508
    reference: chr 11
allele count: 1
allele frequency: 8.278968109414843e-6
allele num: 120788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*284G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.445G>A
  hgvsp: ENSP00000430547.1:p.Val149Met
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.19G>A
  hgvsp: ENSP00000428814.1:p.Val7Met
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.2227G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.301G>A
  hgvsp: ENSP00000428407.1:p.Val101Met
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.340G>A
  hgvsp: ENSP00000429209.1:p.Val114Met
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.454G>A
  hgvsp: ENSP00000429889.1:p.Val152Met
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.460G>A
  hgvsp: ENSP00000416037.3:p.Val154Met
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.359G>A
  hgvsp: ENSP00000429833.1:p.Val121Met
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.454G>A
  hgvsp: ENSP00000435184.1:p.Val152Met
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.464G>A
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.338G>A
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val154Met
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-117978509-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117978509
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117978509
    reference: chr 11
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000522462
  gene symbol: TMPRSS4
  hgvsc: ENST00000522462.2:n.339T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428407
  ensembl transcript: ENST00000522151
  gene symbol: TMPRSS4
  hgvsc: ENST00000522151.1:c.302T>G
  hgvsp: ENSP00000428407.1:p.Val101Gly
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000430547
  ensembl transcript: ENST00000522824
  gene symbol: TMPRSS4
  hgvsc: ENST00000522824.1:c.446T>G
  hgvsp: ENSP00000430547.1:p.Val149Gly
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000435184
  ensembl transcript: ENST00000534111
  gene symbol: TMPRSS4
  hgvsc: ENST00000534111.1:c.455T>G
  hgvsp: ENSP00000435184.1:p.Val152Gly
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000416037
  ensembl transcript: ENST00000437212
  gene symbol: TMPRSS4
  hgvsc: ENST00000437212.3:c.461T>G
  hgvsp: ENSP00000416037.3:p.Val154Gly
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000428814
  ensembl transcript: ENST00000522307
  gene symbol: TMPRSS4
  hgvsc: ENST00000522307.1:c.20T>G
  hgvsp: ENSP00000428814.1:p.Val7Gly
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000431062
  ensembl transcript: ENST00000517483
  gene symbol: TMPRSS4
  hgvsc: ENST00000517483.1:c.*285T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429889
  ensembl transcript: ENST00000519236
  gene symbol: TMPRSS4
  hgvsc: ENST00000519236.1:c.455T>G
  hgvsp: ENSP00000429889.1:p.Val152Gly
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429833
  ensembl transcript: ENST00000517544
  gene symbol: TMPRSS4
  hgvsc: ENST00000517544.1:c.360T>G
  hgvsp: ENSP00000429833.1:p.Val121Gly
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137648
  ensembl protein: ENSP00000429209
  ensembl transcript: ENST00000523251
  gene symbol: TMPRSS4
  hgvsc: ENST00000523251.1:c.341T>G
  hgvsp: ENSP00000429209.1:p.Val114Gly
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000519813
  gene symbol: TMPRSS4
  hgvsc: ENST00000519813.1:n.465T>G
  variant of: http://identifiers.org/hgnc/11878
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137648
  ensembl transcript: ENST00000528118
  gene symbol: TMPRSS4
  hgvsc: ENST00000528118.1:n.2228T>G
  variant of: http://identifiers.org/hgnc/11878
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42027
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val154Gly
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42159
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1070
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.449779519843214e-4
allele num: 16328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.92e-1

FS
type: SiteQuality
SIO_000300: 1.423e0

QD
type: SiteQuality
SIO_000300: 1.236e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.97e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 3.205292e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.9e0

GenotypeDepth
all individuals: 1359
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42156
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.523e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

FS
type: SiteQuality
SIO_000300: 5.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.488e1

VQSLOD
type: SiteQuality
SIO_000300: -2.587e-1

DP
type: SiteQuality
SIO_000300: 3.204357e6

GenotypeDepth
all individuals: 5931
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7572
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42156
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 4.13e0

VQSLOD
type: SiteQuality
SIO_000300: -2.316e0

FS
type: SiteQuality
SIO_000300: 2.165e0

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 3.202575e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.56e-1

GenotypeDepth
all individuals: 4714
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7370
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42157
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503352476021528e-5
allele num: 66518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.200712e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.804e0

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.09e-1

FS
type: SiteQuality
SIO_000300: 7.236e0

QD
type: SiteQuality
SIO_000300: 8.48e0

MQ
type: SiteQuality
SIO_000300: 5.891e1

VQSLOD
type: SiteQuality
SIO_000300: -1.357e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e-1

GenotypeDepth
all individuals: 935
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6023
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 423
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 7.531935406121957e-5
allele num: 66384
num of homozygotes: 0

FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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DP
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MQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66376
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FS
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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African
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allele frequency: 0.0e0
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South Asian
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Other
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.018503426001389e-5
allele num: 66258
num of homozygotes: 0

South Asian
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ClippingRankSum
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MQ
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VQSLOD
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DP
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FS
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InbreedingCoeff
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QD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 6.363752068219422e-5
allele num: 15714
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66164
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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FS
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MQ
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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Latino
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East Asian
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allele frequency: 1.158211721102618e-4
allele num: 8634
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66090
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DP
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FS
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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Other
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MQRankSum
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.574565416285453e-4
allele num: 15302
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.130376e6

MQRankSum
type: SiteQuality
SIO_000300: -1.059e0

VQSLOD
type: SiteQuality
SIO_000300: 3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 3.446e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

QD
type: SiteQuality
SIO_000300: 1.143e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.516303856923494e-5
allele num: 66426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.2583e1

DP
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VQSLOD
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SIO_000300: -1.457e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.85e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
SIO_000300: 7.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 7.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.743e0

QD
type: SiteQuality
SIO_000300: 1.136e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.59e-1

DP
type: SiteQuality
SIO_000300: 1.753705e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 36832
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.754413e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.188e1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 36832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.727626459143969e-4
allele num: 16448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

QD
type: SiteQuality
SIO_000300: 1.188e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

DP
type: SiteQuality
SIO_000300: 1.754413e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
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East Asian
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MQ
type: SiteQuality
SIO_000300: 5.921e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

European (Finnish)
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allele count: 0
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Other
type: Population
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African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele num: 906
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

FS
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VQSLOD
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ReadPosRankSum
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SIO_000300: 2.86e-1

MQ
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SIO_000300: 5.94e1

MQRankSum
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BaseQRankSum
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SIO_000300: -3.246e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
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SIO_000300: 1.454e1

DP
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SIO_000300: 1.760901e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.399999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
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ClippingRankSum
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SIO_000300: -2.94e-1

MQRankSum
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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SIO_000300: 1.12e0

VQSLOD
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SIO_000300: -1.759e0

DP
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SIO_000300: 1.762501e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

South Asian
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QD
type: SiteQuality
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DP
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BaseQRankSum
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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SIO_000300: -2.27e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
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MQ
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SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 7.355e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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African
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allele num: 10384
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Other
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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VQSLOD
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DP
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele frequency: 1.158748551564311e-4
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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African
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allele frequency: 4.815100154083205e-4
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European (Non-Finnish)
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allele num: 66596
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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DP
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66602
num of homozygotes: 0

African
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Latino
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Other
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European (Finnish)
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South Asian
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East Asian
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MQRankSum
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

African
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allele count: 69
allele frequency: 6.642279553330767e-3
allele num: 10388
num of homozygotes: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.503963487869325e-5
allele num: 66608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

FS
type: SiteQuality
SIO_000300: 5.21e-1

MQ
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SIO_000300: 5.97e1

MQRankSum
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SIO_000300: 1.9e-1

InbreedingCoeff
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SIO_000300: 4.13e-2

VQSLOD
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ReadPosRankSum
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SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

DP
type: SiteQuality
SIO_000300: 1.76711e6

QD
type: SiteQuality
SIO_000300: 1.419e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
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SIO_000300: 7.31e-1

InbreedingCoeff
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SIO_000300: 4.13e-2

VQSLOD
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ClippingRankSum
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SIO_000300: -4.85e-1

QD
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DP
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SIO_000300: 1.76711e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.96e-1

BaseQRankSum
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SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
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SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 6.609e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.763736e6

QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeDepth
all individuals: 61
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 525
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GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.763876e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.127e0

ReadPosRankSum
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SIO_000300: -4.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.386e-1

MQRankSum
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SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

QD
type: SiteQuality
SIO_000300: 1.02e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11280
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.762936e6

FS
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SIO_000300: 4.282e0

BaseQRankSum
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SIO_000300: 1.94e0

InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: 1.26e0

VQSLOD
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SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
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SIO_000300: 1.31e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.215509906405737e-4
allele num: 16454
num of homozygotes: 0

East Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

InbreedingCoeff
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MQ
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QD
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MQRankSum
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DP
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ReadPosRankSum
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SIO_000300: 1.26e0

FS
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 17
allele frequency: 1.6355589763325e-3
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

Other
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European (Finnish)
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South Asian
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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ClippingRankSum
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MQ
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SIO_000300: 5.958e1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1590
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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FS
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SIO_000300: 4.76e0

DP
type: SiteQuality
SIO_000300: 1.761328e6

BaseQRankSum
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SIO_000300: -3.316e0

VQSLOD
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SIO_000300: 1.14e0

QD
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SIO_000300: 1.438e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.473e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502133028901039e-5
allele num: 66572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -2.351e0

MQRankSum
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SIO_000300: 2.33e-1

ReadPosRankSum
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FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 4.39e0

ClippingRankSum
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SIO_000300: -6.81e-1

QD
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SIO_000300: 1.428e1

DP
type: SiteQuality
SIO_000300: 1.761123e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.09979260705136e-5
allele num: 16394
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

QD
type: SiteQuality
SIO_000300: 1.135e1

InbreedingCoeff
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SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.201e0

BaseQRankSum
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SIO_000300: -5.47e-1

DP
type: SiteQuality
SIO_000300: 1.760219e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.31e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.138e0

BaseQRankSum
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SIO_000300: -5.134e0

QD
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SIO_000300: 9.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

ClippingRankSum
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SIO_000300: 7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 1.756418e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505117399157134e-5
allele num: 66440
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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SIO_000300: -1.048e0

VQSLOD
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ReadPosRankSum
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DP
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InbreedingCoeff
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QD
type: SiteQuality
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FS
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SIO_000300: 4.137e0

BaseQRankSum
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SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

ClippingRankSum
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SIO_000300: 4.94e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16060
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
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MQRankSum
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QD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16044
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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African
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allele count: 6
allele frequency: 5.775895263765884e-4
allele num: 10388
num of homozygotes: 0

East Asian
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allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.011413256241154e-5
allele num: 66414
num of homozygotes: 0

Latino
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511578692786746e-5
allele num: 66156
num of homozygotes: 0

Other
type: Population
allele count: 0
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African
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South Asian
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Latino
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.03e0

ReadPosRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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SIO_000300: 1.730493e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 236
bin: 3.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.466805338880222e-4
allele num: 11538
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.654245408570669e-5
allele num: 15028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515702679762338e-5
allele num: 65976
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.023e1

InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
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FS
type: SiteQuality
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BaseQRankSum
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DP
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SIO_000300: 1.716181e6

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.549866537248241e-5
allele num: 65936
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

South Asian
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allele frequency: 6.688963210702341e-5
allele num: 14950
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 4.0e-1

ReadPosRankSum
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FS
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QD
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DP
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InbreedingCoeff
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SIO_000300: 5.0e-4

BaseQRankSum
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SIO_000300: 9.2e-2

ClippingRankSum
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SIO_000300: -9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14480
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65742
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
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allele num: 8606
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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VQSLOD
type: SiteQuality
SIO_000300: -2.229e-1

InbreedingCoeff
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SIO_000300: -4.0e-4

MQRankSum
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FS
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DP
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SIO_000300: 1.69615e6

MQ
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SIO_000300: 5.927e1

ReadPosRankSum
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SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.291e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

QD
type: SiteQuality
SIO_000300: 8.32e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.612899296568105e-5
allele num: 65678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

MQ
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SIO_000300: 5.964e1

ReadPosRankSum
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DP
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MQRankSum
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FS
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BaseQRankSum
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SIO_000300: -2.765e0

QD
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SIO_000300: 1.021e1

VQSLOD
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SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.53950366401872e-5
allele num: 64956
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
type: Population
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num of homozygotes: 0

South Asian
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allele frequency: 7.67341927562922e-5
allele num: 13032
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FS
type: SiteQuality
SIO_000300: 1.625e0

ReadPosRankSum
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DP
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QD
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 1.6e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.707950158500989e-5
allele num: 63722
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
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allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.908838684106223e-5
allele num: 10092
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63722
num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
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MQ
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FS
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QD
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MQRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.042028482111844e-3
allele num: 11516
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.064e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

FS
type: SiteQuality
SIO_000300: 3.006e0

MQ
type: SiteQuality
SIO_000300: 6.033e1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

DP
type: SiteQuality
SIO_000300: 1.528166e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeQuality
all individuals: 2237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.934432743890324e-5
allele num: 10066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

DP
type: SiteQuality
SIO_000300: 1.5049e6

VQSLOD
type: SiteQuality
SIO_000300: 9.91e-1

FS
type: SiteQuality
SIO_000300: 4.136e0

QD
type: SiteQuality
SIO_000300: 1.147e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.139e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19840
bin: 6.25e1
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GenotypeQuality
all individuals: 1444
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593727090173079e-5
allele num: 62746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.394478e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

MQ
type: SiteQuality
SIO_000300: 6.113e1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.94e1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

GenotypeQuality
all individuals: 3266
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1430
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4742
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607820438613416e-5
allele num: 62196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11002
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.731e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

DP
type: SiteQuality
SIO_000300: 1.296751e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.367e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 4.48e0

GenotypeQuality
all individuals: 3117
bin: 7.5e0
variant carriers: 11

GenotypeQuality
all individuals: 2617
bin: 1.75e1
variant carriers: 18

GenotypeQuality
all individuals: 6997
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variant carriers: 23

GenotypeQuality
all individuals: 546
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variant carriers: 29

GenotypeQuality
all individuals: 9832
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variant carriers: 22

GenotypeQuality
all individuals: 1442
bin: 6.75e1
variant carriers: 24

GenotypeQuality
all individuals: 3689
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variant carriers: 40

GenotypeQuality
all individuals: 4748
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variant carriers: 3521

GenotypeQuality
all individuals: 5124
bin: 2.75e1
variant carriers: 17

GenotypeQuality
all individuals: 8222
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variant carriers: 19

GenotypeQuality
all individuals: 1585
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variant carriers: 12

GenotypeQuality
all individuals: 236
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variant carriers: 51

GenotypeQuality
all individuals: 1939
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variant carriers: 44

GenotypeQuality
all individuals: 3944
bin: 6.25e1
variant carriers: 45

GenotypeQuality
all individuals: 281
bin: 9.25e1
variant carriers: 39

GenotypeQuality
all individuals: 1073
bin: 5.75e1
variant carriers: 38

GenotypeQuality
all individuals: 686
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variant carriers: 39

GenotypeQuality
all individuals: 2907
bin: 4.25e1
variant carriers: 17

GenotypeQuality
all individuals: 439
bin: 8.25e1
variant carriers: 44

African
type: Population
allele count: 1535
allele frequency: 1.641009193927731e-1
allele num: 9354
num of homozygotes: 121

European (Non-Finnish)
type: Population
allele count: 314
allele frequency: 5.436476332282974e-3
allele num: 57758
num of homozygotes: 4

East Asian
type: Population
allele count: 1121
allele frequency: 1.478891820580475e-1
allele num: 7580
num of homozygotes: 65

South Asian
type: Population
allele count: 461
allele frequency: 5.681538082326842e-2
allele num: 8114
num of homozygotes: 18

Latino
type: Population
allele count: 402
allele frequency: 3.955135773317592e-2
allele num: 10164
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 124
allele frequency: 2.018886356235754e-2
allele num: 6142
num of homozygotes: 3

Other
type: Population
allele count: 18
allele frequency: 2.564102564102564e-2
allele num: 702
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

DP
type: SiteQuality
SIO_000300: 1.092555e6

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

QD
type: SiteQuality
SIO_000300: 1.52e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.67e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

GenotypeQuality
all individuals: 1537
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 267
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variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.730942325001731e-5
allele num: 57772
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.694e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

DP
type: SiteQuality
SIO_000300: 1.073912e6

QD
type: SiteQuality
SIO_000300: 9.84e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5910
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GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57814
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.83477576711251e-5
allele num: 10168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.954e0

QD
type: SiteQuality
SIO_000300: 1.02e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.791e0

DP
type: SiteQuality
SIO_000300: 1.065693e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 5359
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 266
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GenotypeQuality
all individuals: 2230
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GenotypeQuality
all individuals: 3159
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GenotypeQuality
all individuals: 298
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GenotypeQuality
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GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 427
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.093613298337708e-4
allele num: 9144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.739372434425659e-5
allele num: 57492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

BaseQRankSum
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SIO_000300: -1.511e0

QD
type: SiteQuality
SIO_000300: 1.117e1

DP
type: SiteQuality
SIO_000300: 1.063073e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeDepth
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 4643
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2537
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.7307625739901e-5
allele num: 57778
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.75178866263071e-4
allele num: 7268
num of homozygotes: 0

African
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allele count: 8
allele frequency: 9.138679460817912e-4
allele num: 8754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14234
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.386e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 3.58e-1

MQRankSum
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 4.58e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.77e0

DP
type: SiteQuality
SIO_000300: 1.087908e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8784
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.718567402213515e-5
allele num: 58188
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7308
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14384
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.7e-3

MQRankSum
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SIO_000300: -6.33e-1

BaseQRankSum
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SIO_000300: -1.233e0

ClippingRankSum
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SIO_000300: 1.23e0

VQSLOD
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QD
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FS
type: SiteQuality
SIO_000300: 2.625e0

DP
type: SiteQuality
SIO_000300: 1.107988e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.233e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 105

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 294
bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

African
type: Population
allele count: 95
allele frequency: 1.074903824394659e-2
allele num: 8838
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 8.174943797261394e-4
allele num: 9786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.140859551717047e-5
allele num: 58356
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ReadPosRankSum
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SIO_000300: 3.11e-1

InbreedingCoeff
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SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

QD
type: SiteQuality
SIO_000300: 1.486e1

DP
type: SiteQuality
SIO_000300: 1.117627e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.397546971086875e-5
allele num: 58866
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.168348e6

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
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SIO_000300: 1.196e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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FS
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ReadPosRankSum
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SIO_000300: 5.48e-1

BaseQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14854
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60788
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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DP
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11058
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15616
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.561816705191479e-5
allele num: 64028
num of homozygotes: 0

MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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QD
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 302
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.994415636218588e-4
allele num: 10028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.447e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.394e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 6.014e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

DP
type: SiteQuality
SIO_000300: 1.41868e6

GenotypeDepth
all individuals: 15
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 300
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535437906891045e-5
allele num: 65128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

FS
type: SiteQuality
SIO_000300: 5.528e0

MQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

DP
type: SiteQuality
SIO_000300: 1.420929e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

QD
type: SiteQuality
SIO_000300: 1.143e1

GenotypeDepth
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 50041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.226391954868776e-4
allele num: 16308
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e-1

DP
type: SiteQuality
SIO_000300: 1.453752e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

QD
type: SiteQuality
SIO_000300: 1.016e1

GenotypeDepth
all individuals: 205
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2683
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4460
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 2.177e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.234e1

DP
type: SiteQuality
SIO_000300: 1.462564e6

MQ
type: SiteQuality
SIO_000300: 5.886e1

MQRankSum
type: SiteQuality
SIO_000300: -1.512e0

VQSLOD
type: SiteQuality
SIO_000300: -1.488e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0