17-1444970-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1444970
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1444970
    reference: chr 17
allele count: 1
allele frequency: 1.215184951149565e-5
allele num: 82292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-36C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-36C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-36C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2724C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-36C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-27C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-36C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-36C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-36C>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3912
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

17-1444970-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1444970
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1444970
    reference: chr 17
allele count: 1
allele frequency: 1.215184951149565e-5
allele num: 82292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-27C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-36C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-36C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-36C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2724C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-36C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-36C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-36C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-36C>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15338
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8858
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

17-1444981-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1444981
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1444981
    reference: chr 17
allele count: 2
allele frequency: 2.683987331579795e-5
allele num: 74516
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2735C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-47C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-47C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-47C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-47C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-47C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-47C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-38C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-47C>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

17-1444984-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1444984
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1444984
    reference: chr 17
allele count: 73
allele frequency: 9.964237940542164e-4
allele num: 73262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2738T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-50T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-41T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-50T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-50T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-50T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-50T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-50T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-50T>C
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18907
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18692
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3255
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5583
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-1445013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1445013
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1445013
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 32130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-79G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-79G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2767G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-79G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-79G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-70G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-79G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-79G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-79G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17677
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24733
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

17-1445026-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1445026
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1445025
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 26294
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-93delC
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-93delC
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-93delC
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-93delC
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-93delC
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-84delC
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2781delC
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-93delC
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-93delC
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11948
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30631
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9190
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: TG
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ

17-1445036-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1445036
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1445036
    reference: chr 17
allele count: 1
allele frequency: 4.267668146124957e-5
allele num: 23432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-102C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-102C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-93C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-102C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-102C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-102C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2790C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-102C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-102C>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32837
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32369
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

17-1445037-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1445037
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1445037
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 23386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-103C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-103C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-103C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-103C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-103C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-94C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-103C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-103C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2791C>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8322
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-1445051-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1445051
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1445051
    reference: chr 17
allele count: 1
allele frequency: 4.602356406480118e-5
allele num: 21728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-117A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-117A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-117A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-117A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-108A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-117A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-117A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2805A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-117A>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

17-1445052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1445052
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1445052
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21696
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-118C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-118C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2806C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-118C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-118C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-118C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-118C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-118C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-109C>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32019
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30866
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-1445087-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1445087
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1445087
    reference: chr 17
allele count: 3
allele frequency: 1.473911761815859e-4
allele num: 20354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2841G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-153G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-153G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-153G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-144G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-153G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-153G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-153G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-153G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22004
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

17-1445092-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1445092
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1445092
    reference: chr 17
allele count: 20
allele frequency: 9.838646202282567e-4
allele num: 20328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.170-158G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-2846G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.79-158G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-149G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.298-158G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.79-158G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.79-158G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.79-158G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-158G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 21021
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9191
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

17-1446267-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446267
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446267
    reference: chr 17
allele count: 1
allele frequency: 1.118993800774344e-5
allele num: 89366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+47A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+47A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+47A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4021A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1333A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+47A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+47A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+47A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1324A>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16678
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3699
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-1446272-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446272
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446272
    reference: chr 17
allele count: 1
allele frequency: 1.120975697246884e-5
allele num: 89208
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+42A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+42A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+42A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+42A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+42A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+42A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1329A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4026A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1338A>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11535
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2369
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

17-1446275-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446275
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446275
    reference: chr 17
allele count: 2
allele frequency: 2.242202739971748e-5
allele num: 89198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4029A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+39A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1341A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+39A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+39A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+39A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1332A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+39A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+39A>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12707
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13001
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

17-1446276-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446276
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446276
    reference: chr 17
allele count: 1
allele frequency: 1.122032224765495e-5
allele num: 89124
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+38T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+38T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1333T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+38T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+38T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1342T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+38T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+38T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4030T>C
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12595
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-1446277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446277
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446277
    reference: chr 17
allele count: 1
allele frequency: 1.123317831547258e-5
allele num: 89022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4031G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1343G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+37G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+37G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1334G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+37G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+37G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+37G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+37G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3904
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-1446278-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446278
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446278
    reference: chr 17
allele count: 1
allele frequency: 1.12145340361108e-5
allele num: 89170
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+36T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1335T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+36T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+36T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1344T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+36T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+36T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4032T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+36T>C
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

17-1446278-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446278
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446278
    reference: chr 17
allele count: 1
allele frequency: 1.12145340361108e-5
allele num: 89170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+36T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4032T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+36T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+36T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+36T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+36T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1344T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+36T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1335T>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17491
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

17-1446289-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446289
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446289
    reference: chr 17
allele count: 1
allele frequency: 1.129586119645762e-5
allele num: 88528
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1355A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+25A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+25A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+25A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+25A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+25A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+25A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4043A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1346A>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11297
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17176
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

17-1446295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446295
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446295
    reference: chr 17
allele count: 1
allele frequency: 1.13574413956024e-5
allele num: 88048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1361G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4049G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+19G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+19G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+19G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+19G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+19G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1352G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+19G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17814
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20015
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-1446298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446298
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446298
    reference: chr 17
allele count: 1
allele frequency: 1.140849248180345e-5
allele num: 87654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1364G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1355G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4052G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+16G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20580
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

17-1446302-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446302
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446302
    reference: chr 17
allele count: 2
allele frequency: 2.295209896945076e-5
allele num: 87138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1368C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4056C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+12C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1359C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+12C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+12C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+12C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+12C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+12C>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11084
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17359
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/17-1446304-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446304
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446304
    reference: chr 17
allele count: 1
allele frequency: 1.15300357431108e-5
allele num: 86730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1361G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4058G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+10G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+10G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+10G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+10G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+10G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+10G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1370G>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11219
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

17-1446304-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446304
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446304
    reference: chr 17
allele count: 1
allele frequency: 1.15300357431108e-5
allele num: 86730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.78+10G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.169+10G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.78+10G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.297+10G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1361G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.78+10G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4058G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1370G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.78+10G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21590
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

17-1446328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446328
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446328
    reference: chr 17
allele count: 1
allele frequency: 1.269035532994924e-5
allele num: 78800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.356-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1385G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.290-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.71-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.71-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.71-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.71-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4082G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1394G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.162-7G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
hgvs: c.290-7G>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

17-1446329-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446329
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446329
    reference: chr 17
allele count: 2
allele frequency: 2.549719530851606e-5
allele num: 78440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.71-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4083C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.162-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.290-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1395C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.71-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.71-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.71-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.356-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1386C>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29696
  bin: 2.25e1
  variant carriers: 0
hgvs: c.290-8C>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ

17-1446343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446343
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446343
    reference: chr 17
allele count: 1
allele frequency: 1.40643019886923e-5
allele num: 71102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1400C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4097C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.71-22C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1409C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.162-22C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.71-22C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.71-22C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.290-22C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.356-22C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.71-22C>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20666
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-1446343-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446343
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446342
    reference: chr 17
allele count: 1
allele frequency: 1.40643019886923e-5
allele num: 71102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.71-23delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1410delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.356-23delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.290-23delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.162-23delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1401delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4098delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.71-23delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.71-23delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.71-23delT
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18647
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: GA
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-1446346-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446346
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446346
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 69466
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.162-25T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.71-25T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.290-25T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.356-25T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.71-25T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1412T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.71-25T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4100T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1403T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.71-25T>C
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19050
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

17-1446353-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446353
    reference: chr 17
allele count: 1
allele frequency: 1.527883880825057e-5
allele num: 65450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.162-32T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.290-32T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.71-32T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.356-32T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1410T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1419T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4107T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.71-32T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.71-32T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.71-32T>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3874
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27209
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-1446360-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446360
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446360
    reference: chr 17
allele count: 1
allele frequency: 1.749536372861192e-5
allele num: 57158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.71-39C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.71-39C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.290-39C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1417C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.162-39C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.71-39C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.356-39C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.71-39C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1426C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4114C>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15602
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9658
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

17-1446361-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446361
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446361
    reference: chr 17
allele count: 1
allele frequency: 1.740401684708831e-5
allele num: 57458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4115T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.71-40T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1427T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.71-40T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.290-40T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1418T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.356-40T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.71-40T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.162-40T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.71-40T>C
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15531
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-1446368-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1446368
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1446368
    reference: chr 17
allele count: 1
allele frequency: 1.931769887570993e-5
allele num: 51766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.71-47T>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.71-47T>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.290-47T>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.71-47T>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.290-4122T>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-9-1434T>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.356-47T>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.71-47T>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.162-47T>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.290-1425T>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13549
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-1451548-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451548
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451548
    reference: chr 17
allele count: 1
allele frequency: 8.598304414369486e-6
allele num: 116302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+42A>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+42A>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+42A>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+42A>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+42A>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+42A>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+42A>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+42A>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+42A>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+42A>C
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7523
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9039
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

17-1451552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451552
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451552
    reference: chr 17
allele count: 2
allele frequency: 1.719040088014852e-5
allele num: 116344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+38G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+38G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+38G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+38G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+38G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+38G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+38G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+38G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+38G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+38G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

17-1451553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451553
    reference: chr 17
allele count: 3
allele frequency: 2.576345711243173e-5
allele num: 116444
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+37C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+37C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+37C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+37C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+37C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+37C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+37C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+37C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+37C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+37C>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-1451553-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451553
    reference: chr 17
allele count: 1
allele frequency: 8.587819037477242e-6
allele num: 116444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+37C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+37C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+37C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+37C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+37C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+37C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+37C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+37C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+37C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+37C>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

17-1451566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451566
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451566
    reference: chr 17
allele count: 6
allele frequency: 5.126189703193616e-5
allele num: 117046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+24G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+24G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+24G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+24G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+24G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+24G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+24G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+24G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+24G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+24G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14055
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16220
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

17-1451567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451567
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451567
    reference: chr 17
allele count: 3
allele frequency: 2.559421229545959e-5
allele num: 117214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+23C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+23C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+23C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+23C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+23C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+23C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+23C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+23C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+23C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+23C>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

17-1451569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451569
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451569
    reference: chr 17
allele count: 1
allele frequency: 8.5260214173658e-6
allele num: 117288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+21G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+21G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+21G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+21G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+21G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+21G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+21G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+21G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+21G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+21G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

17-1451570-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451570
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451570
    reference: chr 17
allele count: 5
allele frequency: 4.257565694238662e-5
allele num: 117438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+20C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+20C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+20C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+20C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+20C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+20C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+20C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+20C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+20C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+20C>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

17-1451571-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451571
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451571
    reference: chr 17
allele count: 1
allele frequency: 8.506873553831496e-6
allele num: 117552
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+19A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+19A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+19A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+19A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+19A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+19A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+19A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+19A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+19A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+19A>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

17-1451573-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451573
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451573
    reference: chr 17
allele count: 20
allele frequency: 1.700969552645008e-4
allele num: 117580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+17C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+17C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+17C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+17C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+17C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+17C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+17C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+17C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+17C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+17C>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14110
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3583
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9051
  bin: 9.75e1
  variant carriers: 20
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

17-1451574-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451574
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451574
    reference: chr 17
allele count: 24
allele frequency: 2.039602277555877e-4
allele num: 117670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+16G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+16G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7534
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-1451576-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451576
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451576
    reference: chr 17
allele count: 1
allele frequency: 8.481332586976066e-6
allele num: 117906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+14G>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+14G>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+14G>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+14G>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+14G>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+14G>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+14G>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+14G>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+14G>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+14G>C
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-1451577-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451577
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451577
    reference: chr 17
allele count: 4
allele frequency: 3.390520105784227e-5
allele num: 117976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+13G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+13G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+13G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+13G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+13G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+13G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+13G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+13G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+13G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+13G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14155
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2624
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

17-1451578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451578
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451578
    reference: chr 17
allele count: 3545
allele frequency: 3.000220044347399e-2
allele num: 118158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+12C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+12C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+12C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+12C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+12C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+12C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+12C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+12C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+12C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+12C>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 5.25e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 4.25e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 3.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 342
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 16326
  bin: 2.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 4.75e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 432
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 1.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.75e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 13628
  bin: 3.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 68
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/17-1451583-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451583
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451583
    reference: chr 17
allele count: 1
allele frequency: 8.43810648890389e-6
allele num: 118510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-10+7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.289+7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.289+7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.161+7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.355+7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.70+7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.70+7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.289+7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.70+7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.70+7G>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7556
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24884
  bin: 6.25e1
  variant carriers: 0
hgvs: c.289+7G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-1451591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451591
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451591
    reference: chr 17
allele count: 86
allele frequency: 7.220216606498195e-4
allele num: 119110
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.288C>T
  hgvsp: ENST00000313486.7:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.288C>T
  hgvsp: ENST00000575288.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.288C>T
  hgvsp: ENST00000539476.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.69C>T
  hgvsp: ENST00000575895.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.69C>T
  hgvsp: ENST00000573231.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.354C>T
  hgvsp: ENST00000573056.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.69C>T
  hgvsp: ENST00000576010.2:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.160C>T
  hgvsp: ENST00000574991.1:c.160C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.69C>T
  hgvsp: ENST00000576722.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14680
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17663
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
hgvs: c.288C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

17-1451599-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451599
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451599
    reference: chr 17
allele count: 2
allele frequency: 1.673164120668596e-5
allele num: 119534
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.280T>A
  hgvsp: ENSP00000316809.7:p.Cys94Ser
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-19T>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.61T>A
  hgvsp: ENSP00000461140.1:p.Cys21Ser
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.61T>A
  hgvsp: ENSP00000460983.1:p.Cys21Ser
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.61T>A
  hgvsp: ENSP00000460771.1:p.Cys21Ser
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.346T>A
  hgvsp: ENSP00000461539.1:p.Cys116Ser
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.280T>A
  hgvsp: ENSP00000441869.1:p.Cys94Ser
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.152T>A
  hgvsp: ENSP00000461245.1:p.Cys52Ser
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.280T>A
  hgvsp: ENSP00000461011.1:p.Cys94Ser
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.61T>A
  hgvsp: ENSP00000460008.2:p.Cys21Ser
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys94Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

17-1451601-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451601
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451601
    reference: chr 17
allele count: 1
allele frequency: 8.357570287166115e-6
allele num: 119652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.344A>T
  hgvsp: ENSP00000461539.1:p.Tyr115Phe
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-21A>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.59A>T
  hgvsp: ENSP00000460008.2:p.Tyr20Phe
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.278A>T
  hgvsp: ENSP00000461011.1:p.Tyr93Phe
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.278A>T
  hgvsp: ENSP00000316809.7:p.Tyr93Phe
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.150A>T
  hgvsp: ENSP00000461245.1:p.Tyr51Phe
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.59A>T
  hgvsp: ENSP00000460983.1:p.Tyr20Phe
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.278A>T
  hgvsp: ENSP00000441869.1:p.Tyr93Phe
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.59A>T
  hgvsp: ENSP00000460771.1:p.Tyr20Phe
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.59A>T
  hgvsp: ENSP00000461140.1:p.Tyr20Phe
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7831
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Tyr93Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

17-1451618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451618
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451618
    reference: chr 17
allele count: 2
allele frequency: 1.6655008160954e-5
allele num: 120084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.261C>T
  hgvsp: ENST00000539476.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.327C>T
  hgvsp: ENST00000573056.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.261C>T
  hgvsp: ENST00000575288.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.42C>T
  hgvsp: ENST00000576010.2:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.133C>T
  hgvsp: ENST00000574991.1:c.133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.42C>T
  hgvsp: ENST00000575895.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.42C>T
  hgvsp: ENST00000576722.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.42C>T
  hgvsp: ENST00000573231.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.261C>T
  hgvsp: ENST00000313486.7:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala87Ala
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-1451621-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451621
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451621
    reference: chr 17
allele count: 1
allele frequency: 8.324592511196577e-6
allele num: 120126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.39A>G
  hgvsp: ENST00000573231.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.130A>G
  hgvsp: ENST00000574991.1:c.130A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.258A>G
  hgvsp: ENST00000313486.7:c.258A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-41A>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.258A>G
  hgvsp: ENST00000575288.1:c.258A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.324A>G
  hgvsp: ENST00000573056.1:c.324A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.258A>G
  hgvsp: ENST00000539476.1:c.258A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.39A>G
  hgvsp: ENST00000576722.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.39A>G
  hgvsp: ENST00000575895.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.39A>G
  hgvsp: ENST00000576010.2:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4754
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys86Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

17-1451627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451627
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451627
    reference: chr 17
allele count: 1
allele frequency: 8.321544478655239e-6
allele num: 120170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.33C>T
  hgvsp: ENST00000576722.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.33C>T
  hgvsp: ENST00000575895.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.33C>T
  hgvsp: ENST00000573231.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.124C>T
  hgvsp: ENST00000574991.1:c.124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.33C>T
  hgvsp: ENST00000576010.2:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.252C>T
  hgvsp: ENST00000539476.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.252C>T
  hgvsp: ENST00000313486.7:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.252C>T
  hgvsp: ENST00000575288.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.318C>T
  hgvsp: ENST00000573056.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His84His
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

17-1451633-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451633
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451633
    reference: chr 17
allele count: 1
allele frequency: 8.319605983460623e-6
allele num: 120198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.27T>C
  hgvsp: ENST00000573231.1:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.246T>C
  hgvsp: ENST00000313486.7:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.246T>C
  hgvsp: ENST00000539476.1:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.246T>C
  hgvsp: ENST00000575288.1:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-53T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.118T>C
  hgvsp: ENST00000574991.1:c.118T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.312T>C
  hgvsp: ENST00000573056.1:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.27T>C
  hgvsp: ENST00000576010.2:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.27T>C
  hgvsp: ENST00000575895.1:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.27T>C
  hgvsp: ENST00000576722.1:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn82Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

17-1451652-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451652
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451652
    reference: chr 17
allele count: 1
allele frequency: 8.320852055250457e-6
allele num: 120180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.8C>T
  hgvsp: ENSP00000460983.1:p.Ala3Val
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-72C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.227C>T
  hgvsp: ENSP00000441869.1:p.Ala76Val
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.227C>T
  hgvsp: ENSP00000316809.7:p.Ala76Val
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.8C>T
  hgvsp: ENSP00000460771.1:p.Ala3Val
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.293C>T
  hgvsp: ENSP00000461539.1:p.Ala98Val
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.227C>T
  hgvsp: ENSP00000461011.1:p.Ala76Val
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.8C>T
  hgvsp: ENSP00000461140.1:p.Ala3Val
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.99C>T
  hgvsp: ENSP00000461245.1:p.Ala34Val
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.8C>T
  hgvsp: ENSP00000460008.2:p.Ala3Val
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3597
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala76Val
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-1451661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451661
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451661
    reference: chr 17
allele count: 27
allele frequency: 2.24730323611666e-4
allele num: 120144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-2G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.218G>A
  hgvsp: ENSP00000316809.7:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.218G>A
  hgvsp: ENSP00000461011.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.90G>A
  hgvsp: ENSP00000461245.1:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.218G>A
  hgvsp: ENSP00000441869.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.284G>A
  hgvsp: ENSP00000461539.1:p.Arg95Gln
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-81G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg73Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-1451669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451669
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451669
    reference: chr 17
allele count: 15
allele frequency: 1.249500199920032e-4
allele num: 120048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.276G>A
  hgvsp: ENST00000573056.1:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.82G>A
  hgvsp: ENST00000574991.1:c.82G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-10G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.210G>A
  hgvsp: ENST00000539476.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-89G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.210G>A
  hgvsp: ENST00000575288.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.210G>A
  hgvsp: ENST00000313486.7:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr70Thr
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-1451686-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451686
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451686
    reference: chr 17
allele count: 1
allele frequency: 8.353800143685363e-6
allele num: 119706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.264-5T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-101-5T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.70-5T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.198-5T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-22-5T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.198-5T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.198-5T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-22-5T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-22-5T>C
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-22-5T>C
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4732
  bin: 7.75e1
  variant carriers: 0
hgvs: c.198-5T>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

17-1451688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451688
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451688
    reference: chr 17
allele count: 1
allele frequency: 8.358268835358821e-6
allele num: 119642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-22-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-22-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-101-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.70-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.198-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.198-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.264-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.198-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-22-7G>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-22-7G>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.75e1
  variant carriers: 0
hgvs: c.198-7G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-1451688-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451688
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451688
    reference: chr 17
allele count: 1
allele frequency: 8.358268835358821e-6
allele num: 119642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.198-7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.198-7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-22-7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.198-7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.264-7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.70-7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-22-7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-22-7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-101-7G>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-22-7G>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 7.25e1
  variant carriers: 0
hgvs: c.198-7G>T
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

17-1451689-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451689
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451689
    reference: chr 17
allele count: 2
allele frequency: 1.671709657466691e-5
allele num: 119638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-22-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.198-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.198-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-22-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-101-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.264-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.70-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-22-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-22-8C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.198-8C>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
hgvs: c.198-8C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum

17-1451690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451690
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451690
    reference: chr 17
allele count: 1
allele frequency: 8.363022061652199e-6
allele num: 119574
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.198-9C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-22-9C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-101-9C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.198-9C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.264-9C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.198-9C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.70-9C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-22-9C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-22-9C>T
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-22-9C>T
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

17-1451690-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451690
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451690
    reference: chr 17
allele count: 4
allele frequency: 3.34520882466088e-5
allele num: 119574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.198-9C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-22-9C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-101-9C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-22-9C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.70-9C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.198-9C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.198-9C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-22-9C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-22-9C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.264-9C>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3583
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4727
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

17-1451690-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451690
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451690
    reference: chr 17
allele count: 1
allele frequency: 8.363022061652199e-6
allele num: 119574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.198-9C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-22-9C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-101-9C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.198-9C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.198-9C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-22-9C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-22-9C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.264-9C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-22-9C>A
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.70-9C>A
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

17-1451691-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451691
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451691
    reference: chr 17
allele count: 1
allele frequency: 8.362882183715796e-6
allele num: 119576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.264-10C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-22-10C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-22-10C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.198-10C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.198-10C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.198-10C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.70-10C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-101-10C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-22-10C>G
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-22-10C>G
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7805
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

17-1451692-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451692
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451693
    reference: chr 17
allele count: 1
allele frequency: 8.378156470450242e-6
allele num: 119358
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-22-12dupT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-22-12dupT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-101-12dupT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.198-12dupT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-22-12dupT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.70-12dupT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.264-12dupT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.198-12dupT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.198-12dupT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-22-12dupT
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14723
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

17-1451692-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1451692
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 1451691
    reference: chr 17
allele count: 5
allele frequency: 4.189078235225121e-5
allele num: 119358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460771
  ensembl transcript: ENST00000573231
  gene symbol: PITPNA
  hgvsc: ENST00000573231.1:c.-22-12delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460983
  ensembl transcript: ENST00000576722
  gene symbol: PITPNA
  hgvsc: ENST00000576722.1:c.-22-12delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461140
  ensembl transcript: ENST00000575895
  gene symbol: PITPNA
  hgvsc: ENST00000575895.1:c.-22-12delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000441869
  ensembl transcript: ENST00000539476
  gene symbol: PITPNA
  hgvsc: ENST00000539476.1:c.198-12delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000316809
  ensembl transcript: ENST00000313486
  gene symbol: PITPNA
  hgvsc: ENST00000313486.7:c.198-12delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461011
  ensembl transcript: ENST00000575288
  gene symbol: PITPNA
  hgvsc: ENST00000575288.1:c.198-12delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000460008
  ensembl transcript: ENST00000576010
  gene symbol: PITPNA
  hgvsc: ENST00000576010.2:c.-22-12delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461245
  ensembl transcript: ENST00000574991
  gene symbol: PITPNA
  hgvsc: ENST00000574991.1:c.70-12delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461801
  ensembl transcript: ENST00000576761
  gene symbol: PITPNA
  hgvsc: ENST00000576761.1:c.-101-12delT
  variant of: http://identifiers.org/hgnc/9001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174238
  ensembl protein: ENSP00000461539
  ensembl transcript: ENST00000573056
  gene symbol: PITPNA
  hgvsc: ENST00000573056.1:c.264-12delT
  variant of: http://identifiers.org/hgnc/9001
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17991
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4689
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: GA

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4826
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8858
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3594
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44836
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.750087504375219e-4
allele num: 5714
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

DP
type: SiteQuality
SIO_000300: 1.278489e6

FS
type: SiteQuality
SIO_000300: 3.86e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.274e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

QD
type: SiteQuality
SIO_000300: 1.285e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 3912
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4826
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2404
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.416029453412631e-4
allele num: 7062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5090
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.278489e6

FS
type: SiteQuality
SIO_000300: 3.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.274e0

QD
type: SiteQuality
SIO_000300: 1.285e1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

GenotypeQuality
all individuals: 5696
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8859
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 409
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5429
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4812
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.961055712655653e-5
allele num: 40314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

FS
type: SiteQuality
SIO_000300: 3.3e0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.53e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

DP
type: SiteQuality
SIO_000300: 1.226249e6

VQSLOD
type: SiteQuality
SIO_000300: 7.94e-1

GenotypeQuality
all individuals: 4819
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20147
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 8896
bin: 9.75e1
variant carriers: 77

GenotypeQuality
all individuals: 392
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5707
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

South Asian
type: Population
allele count: 73
allele frequency: 6.132392473118279e-3
allele num: 11904
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 1.091e0

DP
type: SiteQuality
SIO_000300: 1.222245e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.457e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

GenotypeQuality
all individuals: 116
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17942
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9190
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3188
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.140047e6

QD
type: SiteQuality
SIO_000300: 1.195e1

VQSLOD
type: SiteQuality
SIO_000300: -7.789e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.84e-2

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1074
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.13e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 7.91e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.070312e6

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9190
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6190
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.236399604352127e-4
allele num: 8088
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.093e0

QD
type: SiteQuality
SIO_000300: 1.182e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.25e-1

FS
type: SiteQuality
SIO_000300: 8.534000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.859999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.028089e6

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6312
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32488
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9190
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.706e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.88e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.882e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 1.027732e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
all individuals: 573
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30744
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9190
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.253761283851555e-4
allele num: 7976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.028e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.389999999999999e-2

DP
type: SiteQuality
SIO_000300: 9.84549e5

QD
type: SiteQuality
SIO_000300: 1.208e1

MQRankSum
type: SiteQuality
SIO_000300: -1.021e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.992e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.727e0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3319
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9190
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.368e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.352e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.389999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

DP
type: SiteQuality
SIO_000300: 9.84359e5

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.001e0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17377
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9190
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 642
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4860
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.358695652173913e-3
allele num: 2208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.22331e5

VQSLOD
type: SiteQuality
SIO_000300: -1.589e0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

FS
type: SiteQuality
SIO_000300: 6.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.539999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e0

QD
type: SiteQuality
SIO_000300: 1.48e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
all individuals: 136
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5553
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15600
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.154639175257732e-3
allele num: 194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 1.920469950293719e-3
allele num: 8852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.541326067211626e-4
allele num: 2202
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.252252252252252e-3
allele num: 444
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.143e1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

DP
type: SiteQuality
SIO_000300: 9.17813e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.449e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.480000000000001e-2

FS
type: SiteQuality
SIO_000300: 6.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
all individuals: 3111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4256
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11084
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.020855225931614e-5
allele num: 49484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12520
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.263e0

QD
type: SiteQuality
SIO_000300: 8.02e0

FS
type: SiteQuality
SIO_000300: 1.1163e1

VQSLOD
type: SiteQuality
SIO_000300: -2.056e0

DP
type: SiteQuality
SIO_000300: 1.349391e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
all individuals: 703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1979
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3527
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3904
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13899
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.02388180530257e-5
allele num: 49410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.95e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

FS
type: SiteQuality
SIO_000300: 5.166e0

DP
type: SiteQuality
SIO_000300: 1.360286e6

GenotypeQuality
all individuals: 17757
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2395
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15019
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.04776361060514e-5
allele num: 49410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 1.367732e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

QD
type: SiteQuality
SIO_000300: 1.256e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 867
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2994
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15775
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2334
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3904
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 526
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17916
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.005123278898494e-5
allele num: 12492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.453e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.370752e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18072
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49290
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.010253123998718e-5
allele num: 12484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4592
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: -1.701e0

FS
type: SiteQuality
SIO_000300: 8.840999999999999e0

DP
type: SiteQuality
SIO_000300: 1.374502e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

QD
type: SiteQuality
SIO_000300: 2.256e1

GenotypeQuality
all individuals: 17491
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.538461538461538e-3
allele num: 650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

FS
type: SiteQuality
SIO_000300: 8.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.135e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.377744e6

GenotypeQuality
all individuals: 702
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18210
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.002560819462228e-5
allele num: 12496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 1.377744e6

FS
type: SiteQuality
SIO_000300: 8.5e-1

QD
type: SiteQuality
SIO_000300: 1.135e1

MQRankSum
type: SiteQuality
SIO_000300: 8.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 507
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19349
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19900
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.040566461249643e-5
allele num: 49006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

DP
type: SiteQuality
SIO_000300: 1.395827e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.017e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e-1

GenotypeQuality
all individuals: 2439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12406
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.354279523293608e-4
allele num: 7384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48722
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

DP
type: SiteQuality
SIO_000300: 1.401228e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.33e0

QD
type: SiteQuality
SIO_000300: 6.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

GenotypeQuality
all individuals: 2116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2031
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20898
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.062025734081161e-5
allele num: 48496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12378
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.568e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -2.452e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

QD
type: SiteQuality
SIO_000300: 5.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

DP
type: SiteQuality
SIO_000300: 1.4008e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.465e0

GenotypeQuality
all individuals: 328
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 980
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21188
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.150755437489623e-5
allele num: 48184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.665e0

DP
type: SiteQuality
SIO_000300: 1.39815e6

QD
type: SiteQuality
SIO_000300: 2.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.467e0

GenotypeQuality
all individuals: 472
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1906
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 947
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3902
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08611481975968e-5
allele num: 47936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

FS
type: SiteQuality
SIO_000300: 7.134e0

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.86e-2

DP
type: SiteQuality
SIO_000300: 1.394608e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

GenotypeQuality
all individuals: 211
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1906
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1002
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.221235006663705e-4
allele num: 4502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.394608e6

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.134e0

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.86e-2

GenotypeQuality
all individuals: 453
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29286
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3901
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 305
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.541168431841476e-5
allele num: 11708
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.755e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

QD
type: SiteQuality
SIO_000300: 1.751e1

DP
type: SiteQuality
SIO_000300: 1.267954e6

FS
type: SiteQuality
SIO_000300: 3.966e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

GenotypeQuality
all individuals: 727
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3902
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.322017368689918e-5
allele num: 43066
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.602050624799744e-4
allele num: 6242
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.419e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

DP
type: SiteQuality
SIO_000300: 1.260048e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

QD
type: SiteQuality
SIO_000300: 1.756e1

FS
type: SiteQuality
SIO_000300: 1.023e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1379
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3962
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5460
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3898
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4746
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.855976243504083e-4
allele num: 5388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

QD
type: SiteQuality
SIO_000300: 9.82e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.928e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.15247e6

GenotypeQuality
all individuals: 4746
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5460
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3898
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 273
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3962
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.582377853527528e-5
allele num: 38724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11020
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.82e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 1.15247e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.928e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

GenotypeQuality
all individuals: 6229
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3896
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3288
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29077
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.134887e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7657
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1811
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2670
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3897
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.130379207498935e-4
allele num: 4694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.025e0

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

MQ
type: SiteQuality
SIO_000300: 5.756e1

DP
type: SiteQuality
SIO_000300: 1.1049e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.029e1

GenotypeQuality
all individuals: 786
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5171
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5112
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20142
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3409
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.869857890800299e-4
allele num: 5348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.15e-1

QD
type: SiteQuality
SIO_000300: 1.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

DP
type: SiteQuality
SIO_000300: 1.064061e6

VQSLOD
type: SiteQuality
SIO_000300: -2.338e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.708e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

GenotypeQuality
all individuals: 362
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4811
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3352
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9707
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5081
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3412
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3895
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 629
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20615
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.362948960302458e-4
allele num: 4232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.158e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

FS
type: SiteQuality
SIO_000300: 4.771e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.17e0

DP
type: SiteQuality
SIO_000300: 1.063415e6

GenotypeQuality
all individuals: 9850
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8475
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3405
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15320
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6344
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3895
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3223
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.677011325194882e-5
allele num: 27196
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.25e-1

DP
type: SiteQuality
SIO_000300: 1.050307e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.1e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

GenotypeQuality
all individuals: 3563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8427
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18831
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.98421567257997e-5
allele num: 14318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.099999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.654e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.186e0

DP
type: SiteQuality
SIO_000300: 1.859369e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.121e1

GenotypeQuality
all individuals: 2628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3562
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4533
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9036
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1074
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.073801985676083e-5
allele num: 65066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14342
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.923e1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.621e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.867503e6

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4544
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9036
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 980
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.729050279329609e-5
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.072857450142888e-5
allele num: 65086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.934e1

QD
type: SiteQuality
SIO_000300: 1.292e1

DP
type: SiteQuality
SIO_000300: 1.870596e6

FS
type: SiteQuality
SIO_000300: 7.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

GenotypeQuality
all individuals: 2051
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4544
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9036
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 980
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8507
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536428725071444e-5
allele num: 65086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

QD
type: SiteQuality
SIO_000300: 1.292e1

FS
type: SiteQuality
SIO_000300: 7.22e-1

DP
type: SiteQuality
SIO_000300: 1.870596e6

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
all individuals: 689
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4565
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9045
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3575
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531159087429184e-5
allele num: 65310
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.717022143730471e-4
allele num: 14722
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042752867570386e-4
allele num: 9590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 1.887981e6

QD
type: SiteQuality
SIO_000300: 1.283e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.45e-1

GenotypeQuality
all individuals: 566
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8691
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22259
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9041
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4563
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.746727836999056e-5
allele num: 14822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178689297501179e-4
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529800514012973e-5
allele num: 65368
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

FS
type: SiteQuality
SIO_000300: 7.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.584e1

DP
type: SiteQuality
SIO_000300: 1.891658e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9040
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1816
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528771479239283e-5
allele num: 65412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.964e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 1.203e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-1

QD
type: SiteQuality
SIO_000300: 9.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e-1

DP
type: SiteQuality
SIO_000300: 1.894569e6

GenotypeQuality
all individuals: 22640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8743
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9042
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 581
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.055300947143294e-5
allele num: 65460
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.009107956067506e-4
allele num: 14932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.897055e6

VQSLOD
type: SiteQuality
SIO_000300: 9.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

MQRankSum
type: SiteQuality
SIO_000300: -4.13e-1

GenotypeQuality
all individuals: 440
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8753
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9041
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3089
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526670941345302e-5
allele num: 65502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14998
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
SIO_000300: 1.497e1

FS
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.898372e6

GenotypeQuality
all individuals: 524
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8776
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4588
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.052689419378473e-4
allele num: 65516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.835e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.902001e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

GenotypeQuality
all individuals: 4583
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8792
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 502
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9044
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 2621
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23010
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 22
allele frequency: 2.591894439208294e-3
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.328727079457879e-4
allele num: 15052
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.312e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

DP
type: SiteQuality
SIO_000300: 1.903863e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.563e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3587
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8849
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9025
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4602
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523693432881304e-5
allele num: 65630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 4.605e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.224e0

DP
type: SiteQuality
SIO_000300: 1.905964e6

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.156e0

QD
type: SiteQuality
SIO_000300: 1.296e1

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9028
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1503
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23249
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8846
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3583
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.628811777076761e-4
allele num: 15216
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.088e0

DP
type: SiteQuality
SIO_000300: 1.907994e6

FS
type: SiteQuality
SIO_000300: 7.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.37e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.07e-1

GenotypeQuality
all individuals: 388
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 10790
bin: 9.75e1
variant carriers: 3459

GenotypeQuality
all individuals: 23132
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8654
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 488
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1562
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 147
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2387
bin: 9.25e1
variant carriers: 3

Latino
type: Population
allele count: 283
allele frequency: 2.458304378040306e-2
allele num: 11512
num of homozygotes: 7

East Asian
type: Population
allele count: 1
allele frequency: 1.176747469992939e-4
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 73
allele frequency: 4.770618219840544e-3
allele num: 15302
num of homozygotes: 0

African
type: Population
allele count: 92
allele frequency: 9.543568464730291e-3
allele num: 9640
num of homozygotes: 0

Other
type: Population
allele count: 26
allele frequency: 2.974828375286041e-2
allele num: 874
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 419
allele frequency: 6.352334748332322e-2
allele num: 6596
num of homozygotes: 10

European (Non-Finnish)
type: Population
allele count: 2651
allele frequency: 4.032797858099063e-2
allele num: 65736
num of homozygotes: 50

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.23e0

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.406e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

DP
type: SiteQuality
SIO_000300: 2.010479e6

GenotypeQuality
all individuals: 130
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3194
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3576
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9272
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2553
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517957436473481e-5
allele num: 65878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 5.935e1

FS
type: SiteQuality
SIO_000300: 9.419999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.066e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.904295e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1675
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7903
bin: 9.75e1
variant carriers: 85

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3590
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4733
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.064281382656155e-4
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.206525511975009e-4
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 76
allele frequency: 1.150121065375303e-3
allele num: 66080
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

FS
type: SiteQuality
SIO_000300: 6.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.314e1

DP
type: SiteQuality
SIO_000300: 1.917803e6

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

GenotypeQuality
all individuals: 4748
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9451
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7832
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018321209743141e-5
allele num: 66262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.94e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.401e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 2.59e1

DP
type: SiteQuality
SIO_000300: 1.92045e6

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4750
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507749834147518e-5
allele num: 66324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16048
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.091e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.89e1

VQSLOD
type: SiteQuality
SIO_000300: -9.701e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 4.64e0

DP
type: SiteQuality
SIO_000300: 1.921916e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

GenotypeQuality
all individuals: 3599
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4756
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26619
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7830
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2559
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00833308263891e-5
allele num: 66482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.088e-1

FS
type: SiteQuality
SIO_000300: 4.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 1.928798e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.051e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.131e0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26653
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2559
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7830
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 2.502e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

QD
type: SiteQuality
SIO_000300: 1.239e1

DP
type: SiteQuality
SIO_000300: 1.929204e6

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7830
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4751
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9538
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26673
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2559
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.548e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.195e1

DP
type: SiteQuality
SIO_000300: 1.930084e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

GenotypeQuality
all individuals: 321
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26679
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3601
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2559
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7830
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4756
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9547
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.027115858668858e-4
allele num: 9736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.930303e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

QD
type: SiteQuality
SIO_000300: 1.71e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e0

FS
type: SiteQuality
SIO_000300: 2.654e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.24e-2

GenotypeQuality
all individuals: 1681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26608
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4759
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7832
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.169317118802619e-4
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.16e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.930419e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.513e0

VQSLOD
type: SiteQuality
SIO_000300: -1.263e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 9.35e0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4750
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7843
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26554
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2553
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9542
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 2.728099424067899e-3
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.353383458646617e-4
allele num: 66500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.275e1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 1.931352e6

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

GenotypeQuality
all individuals: 26454
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7824
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 474
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9550
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4751
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.257200469497698e-4
allele num: 66454
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.45e-2

DP
type: SiteQuality
SIO_000300: 1.928778e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.258e1

GenotypeQuality
all individuals: 2556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25759
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7814
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.130456105934282e-5
allele num: 16312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.598e1

DP
type: SiteQuality
SIO_000300: 1.918476e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7812
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 224
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3220
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

VQSLOD
type: SiteQuality
SIO_000300: 8.149999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

FS
type: SiteQuality
SIO_000300: 2.496e0

QD
type: SiteQuality
SIO_000300: 1.609e1

DP
type: SiteQuality
SIO_000300: 1.918262e6

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7812
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25715
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50961625554784e-5
allele num: 66242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 8.149999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

FS
type: SiteQuality
SIO_000300: 2.496e0

QD
type: SiteQuality
SIO_000300: 1.609e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 1.918262e6

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4728
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7810
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3218
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9430
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25701
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019414837404511e-5
allele num: 66238
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.634e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

FS
type: SiteQuality
SIO_000300: 2.238e0

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 1.917373e6

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4727
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25392
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7810
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2555
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041449697979588e-4
allele num: 9602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.722e0

DP
type: SiteQuality
SIO_000300: 1.914894e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.637e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.33e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7810
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25392
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.71253534401508e-4
allele num: 8488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.157e1

MQRankSum
type: SiteQuality
SIO_000300: 8.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.33e-1

FS
type: SiteQuality
SIO_000300: 2.722e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.637e0

DP
type: SiteQuality
SIO_000300: 1.914894e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25392
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7810
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4727
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510619656182966e-5
allele num: 66198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.722e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.637e0

VQSLOD
type: SiteQuality
SIO_000300: 7.33e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

DP
type: SiteQuality
SIO_000300: 1.914894e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25449
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4727
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510482750286992e-5
allele num: 66204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.251e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

QD
type: SiteQuality
SIO_000300: 9.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.767e0

DP
type: SiteQuality
SIO_000300: 1.914593e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

GenotypeQuality
all individuals: 151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4689
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3177
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7780
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25230
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.700191404210893e-5
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.009e0

VQSLOD
type: SiteQuality
SIO_000300: 5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.617e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.72e-1

DP
type: SiteQuality
SIO_000300: 1.919669e6

QD
type: SiteQuality
SIO_000300: 4.3e0

GenotypeQuality
all individuals: 7780
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 151
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 9280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 257
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 25230
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1671
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3177
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.159152500615915e-5
allele num: 16236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.052352852171281e-5
allele num: 66090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0