16-29469208-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469208
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469208
    reference: chr 16
allele count: 1
allele frequency: 9.614275275929701e-6
allele num: 104012
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50555C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-92-41C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1376-41C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.369-41C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.918C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.830-41C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.711-41C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-92-41C>T
  variant of: http://identifiers.org/hgnc/30004
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6488
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8674
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

16-29469214-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469214
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469214
    reference: chr 16
allele count: 2
allele frequency: 1.936858415649816e-5
allele num: 103260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.369-35A>G
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-92-35A>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50549A>G
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.711-35A>G
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-92-35A>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.830-35A>G
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.924A>G
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1376-35A>G
  variant of: http://identifiers.org/hgnc/28748
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29415
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

16-29469214-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469214
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469212
    reference: chr 16
allele count: 1
allele frequency: 9.684292078249079e-6
allele num: 103260
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50546_5992-50545delCT
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.369-32_369-31delCT
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1376-32_1376-31delCT
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.711-32_711-31delCT
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.830-32_830-31delCT
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.927_928delCT
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-92-32_-92-31delCT
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-92-32_-92-31delCT
  variant of: http://identifiers.org/hgnc/30004
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: ACT
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-29469219-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469219
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469219
    reference: chr 16
allele count: 1
allele frequency: 9.904128040567309e-6
allele num: 100968
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.830-30G>C
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1376-30G>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.369-30G>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.711-30G>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50544G>C
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-92-30G>C
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.929G>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-92-30G>C
  variant of: http://identifiers.org/hgnc/30004
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9874
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27358
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

16-29469226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469226
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469226
    reference: chr 16
allele count: 3
allele frequency: 3.116494566911139e-5
allele num: 96262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.936C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-92-23C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.830-23C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.369-23C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.711-23C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1376-23C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50537C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-92-23C>T
  variant of: http://identifiers.org/hgnc/30004
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

16-29469229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469229
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469229
    reference: chr 16
allele count: 3
allele frequency: 3.138797631254054e-5
allele num: 95578
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.711-20C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-92-20C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.939C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.830-20C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50534C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.369-20C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1376-20C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-92-20C>T
  variant of: http://identifiers.org/hgnc/30004
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

16-29469233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469233
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469233
    reference: chr 16
allele count: 2
allele frequency: 2.204731353484578e-5
allele num: 90714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.943C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1376-16C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.711-16C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-92-16C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-92-16C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50530C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.830-16C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.369-16C>T
  variant of: http://identifiers.org/hgnc/28748
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5006
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

16-29469236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469236
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469236
    reference: chr 16
allele count: 3168
allele frequency: 3.734087694483734e-2
allele num: 84840
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.830-13C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-92-13C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50527C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.946C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1376-13C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-92-13C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.369-13C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.711-13C>T
  variant of: http://identifiers.org/hgnc/28748
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6741
  bin: 7.5e0
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 2.75e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 6642
  bin: 1.75e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 3.75e1
  variant carriers: 328
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 3.25e1
  variant carriers: 331
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 4.25e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 9460
  bin: 1.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 2.25e1
  variant carriers: 270
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 5.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 4.75e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.75e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 6029
  bin: 7.5e0
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 3.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 1.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.5e0
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 43
num of homozygotes: 133
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

16-29469242-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469242
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469242
    reference: chr 16
allele count: 1
allele frequency: 1.603283524658501e-5
allele num: 62372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1376-7T>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-92-7T>C
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.711-7T>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-92-7T>C
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.369-7T>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.830-7T>C
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50521T>C
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.952T>C
  variant of: http://identifiers.org/hgnc/28748
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
hgvs: c.-92-7T>C
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

16-29469245-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469245
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469244
    reference: chr 16
allele count: 5
allele frequency: 9.28436142162142e-5
allele num: 53854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.369-3delT
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50517delT
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1376-3delT
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-92-3delT
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.956delT
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-92-3delT
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.830-3delT
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.711-3delT
  variant of: http://identifiers.org/hgnc/28748
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13111
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11555
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9069
  bin: 7.5e0
  variant carriers: 0
hgvs: c.-92-3delT
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: GT
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

16-29469248-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469248
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469248
    reference: chr 16
allele count: 72
allele frequency: 1.303403330919623e-3
allele num: 55240
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50515G>C
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1376-1G>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-92-1G>C
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.958G>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.711-1G>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-92-1G>C
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.830-1G>C
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.369-1G>C
  variant of: http://identifiers.org/hgnc/28748
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14212
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11496
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3835
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9575
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3089
  bin: 3.75e1
  variant carriers: 2
hgvs: c.-92-1G>C
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

16-29469258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469258
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469258
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 55332
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.839G>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.378G>A
  hgvsp: ENST00000351581.4:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.720G>A
  hgvsp: ENST00000330181.5:c.720G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1385G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-83G>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50505G>A
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.968G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-83G>A
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 10012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16628
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9405
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys240Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

16-29469265-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469265
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469265
    reference: chr 16
allele count: 1
allele frequency: 1.812447892123101e-5
allele num: 55174
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50498C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1392C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.975C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.385C>T
  hgvsp: ENSP00000335316.4:p.Leu129Phe
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.846C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-76C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.727C>T
  hgvsp: ENSP00000328940.5:p.Leu243Phe
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-76C>T
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9413
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu243Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-29469277-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469277
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469277
    reference: chr 16
allele count: 1
allele frequency: 1.790638541703971e-5
allele num: 55846
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.858C>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.397C>A
  hgvsp: ENSP00000335316.4:p.Leu133Met
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1404C>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-64C>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.739C>A
  hgvsp: ENSP00000328940.5:p.Leu247Met
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.987C>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-64C>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50486C>A
  variant of: http://identifiers.org/hgnc/31914
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21632
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7048
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu247Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

16-29469281-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469281
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469281
    reference: chr 16
allele count: 3
allele frequency: 5.293059035251773e-5
allele num: 56678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.401T>A
  hgvsp: ENSP00000335316.4:p.Ile134Asn
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.743T>A
  hgvsp: ENSP00000328940.5:p.Ile248Asn
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.991T>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50482T>A
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-60T>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-60T>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.862T>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1408T>A
  variant of: http://identifiers.org/hgnc/28748
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18764
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Ile248Asn
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-29469282-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469282
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469282
    reference: chr 16
allele count: 2
allele frequency: 3.524725952557189e-5
allele num: 56742
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-59C>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.744C>G
  hgvsp: ENSP00000328940.5:p.Ile248Met
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.992C>G
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.863C>G
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-59C>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.402C>G
  hgvsp: ENSP00000335316.4:p.Ile134Met
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1409C>G
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50481C>G
  variant of: http://identifiers.org/hgnc/31914
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile248Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP

16-29469295-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469295
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469295
    reference: chr 16
allele count: 2
allele frequency: 3.49882789265596e-5
allele num: 57162
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.876A>G
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1005A>G
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1422A>G
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-46A>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.757A>G
  hgvsp: ENSP00000328940.5:p.Met253Val
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.415A>G
  hgvsp: ENSP00000335316.4:p.Met139Val
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50468A>G
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-46A>G
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 15807
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19553
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21981
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met253Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-29469306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469306
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469306
    reference: chr 16
allele count: 8
allele frequency: 1.443991191653731e-4
allele num: 55402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.768G>A
  hgvsp: ENST00000330181.5:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-35G>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1016G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50457G>A
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1433G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.426G>A
  hgvsp: ENST00000351581.4:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.887G>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-35G>A
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13126
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu256Glu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

16-29469306-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469306
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469305
    reference: chr 16
allele count: 1
allele frequency: 1.804988989567164e-5
allele num: 55402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1019delA
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1436delA
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.771delA
  hgvsp: ENSP00000328940.5:p.Glu258LysfsTer2
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-32delA
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.429delA
  hgvsp: ENSP00000335316.4:p.Glu144LysfsTer2
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50454delA
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.890delA
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-32delA
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23011
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu258LysfsTer2
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: GA
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

16-29469343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469343
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469343
    reference: chr 16
allele count: 4
allele frequency: 1.149029070435482e-4
allele num: 34812
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-5+7G>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-5+7G>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1046+7G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.917+7G>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1463+7G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50420G>A
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.456+7G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.798+7G>A
  variant of: http://identifiers.org/hgnc/28748
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 17020
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15943
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11449
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 1
hgvs: c.-5+7G>A
num of homozygotes: 1
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

16-29469351-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469351
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469351
    reference: chr 16
allele count: 32
allele frequency: 1.171388827879054e-3
allele num: 27318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1463+15G>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.798+15G>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.917+15G>C
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1046+15G>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-5+15G>C
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50412G>C
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.456+15G>C
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-5+15G>C
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20006
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15347
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9622
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20389
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19803
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 2
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

16-29469351-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469351
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469351
    reference: chr 16
allele count: 1
allele frequency: 3.660590087122044e-5
allele num: 27318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1463+15G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-5+15G>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.456+15G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-5+15G>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.798+15G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.917+15G>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1046+15G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50412G>A
  variant of: http://identifiers.org/hgnc/31914
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20006
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19803
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

16-29469354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469354
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469354
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 24372
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-5+18G>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-5+18G>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.917+18G>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1463+18G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50409G>A
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1046+18G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.798+18G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.456+18G>A
  variant of: http://identifiers.org/hgnc/28748
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15282
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21193
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

16-29469355-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469355
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469355
    reference: chr 16
allele count: 3
allele frequency: 1.318101933216169e-4
allele num: 22760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1463+19C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.917+19C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.456+19C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-5+19C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.798+19C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50408C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-5+19C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1046+19C>T
  variant of: http://identifiers.org/hgnc/28748
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15183
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8283
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

16-29469356-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469356
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469356
    reference: chr 16
allele count: 13
allele frequency: 5.99575684899917e-4
allele num: 21682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.456+20G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50407G>A
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1046+20G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-5+20G>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.917+20G>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-5+20G>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.798+20G>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1463+20G>A
  variant of: http://identifiers.org/hgnc/28748
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21841
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15067
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17202
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 21876
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

16-29469398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469398
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469398
    reference: chr 16
allele count: 3
allele frequency: 4.737839545167404e-4
allele num: 6332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1047-18C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.457-18C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-5+62C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50365C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.917+62C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-5+62C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.799-18C>T
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1464-18C>T
  variant of: http://identifiers.org/hgnc/28748
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27420
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

16-29469410-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469410
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469409
    reference: chr 16
allele count: 2
allele frequency: 3.993610223642172e-4
allele num: 5008
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.917+75delT
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-5+75delT
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1464-5delT
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1047-5delT
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.457-5delT
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-5+75delT
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50352delT
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.799-5delT
  variant of: http://identifiers.org/hgnc/28748
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7431
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
hgvs: c.799-5delT
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: CT
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

16-29469411-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469411
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469411
    reference: chr 16
allele count: 1
allele frequency: 2.025931928687196e-4
allele num: 4936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.457-5T>G
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.917+75T>G
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50352T>G
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.799-5T>G
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1464-5T>G
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-5+75T>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-5+75T>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1047-5T>G
  variant of: http://identifiers.org/hgnc/28748
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27233
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 1.25e1
  variant carriers: 2
hgvs: c.799-5T>G
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/16-29469464-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29469464
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29469464
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 2202
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.917+128C>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000328940
  ensembl transcript: ENST00000330181
  gene symbol: SLX1B
  hgvsc: ENST00000330181.5:c.*19C>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000566424
  gene symbol: SLX1B
  hgvsc: ENST00000566424.1:n.1095C>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-50299C>A
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000181625
  ensembl protein: ENSP00000335316
  ensembl transcript: ENST00000351581
  gene symbol: SLX1B
  hgvsc: ENST00000351581.4:c.*19C>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000181625
  ensembl transcript: ENST00000565219
  gene symbol: SLX1B
  hgvsc: ENST00000565219.1:n.1512C>A
  variant of: http://identifiers.org/hgnc/28748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-5+128C>A
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-5+128C>A
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21993
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

16-29472665-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472665
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472665
    reference: chr 16
allele count: 85
allele frequency: 2.707006369426752e-2
allele num: 3140
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47098T>G
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-4-38T>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.-4-38T>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.918-38T>G
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-4-38T>G
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 19217
  bin: 7.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 1.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30313
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 17629
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 22780
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5958
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

16-29472676-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472676
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472676
    reference: chr 16
allele count: 1
allele frequency: 2.439024390243902e-4
allele num: 4100
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-4-27C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.918-27C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-4-27C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.-4-27C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47087C>T
  variant of: http://identifiers.org/hgnc/31914
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35568
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5064
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5808
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33261
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

16-29472687-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472687
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472687
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 1940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.-4-16C>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.-4-16C>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.-4-16C>G
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47076C>G
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.918-16C>G
  variant of: http://identifiers.org/hgnc/48353
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37998
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33287
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4493
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-29472725-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472725
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472725
    reference: chr 16
allele count: 15
allele frequency: 3.218884120171674e-2
allele num: 466
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.940A>C
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.19A>C
  hgvsp: ENSP00000378796.3:p.Thr7Pro
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.19A>C
  hgvsp: ENSP00000455063.1:p.Thr7Pro
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.19A>C
  hgvsp: ENSP00000339221.6:p.Thr7Pro
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.19A>C
  hgvsp: ENSP00000353600.7:p.Thr7Pro
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.19A>C
  hgvsp: ENSP00000456834.1:p.Thr7Pro
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47038A>C
  variant of: http://identifiers.org/hgnc/31914
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9806
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31782
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 1.25e1
  variant carriers: 9
hgvs: p.Thr7Pro
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

16-29472728-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472728
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472728
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 1578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.22T>C
  hgvsp: ENSP00000455063.1:p.Ser8Pro
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.22T>C
  hgvsp: ENSP00000456834.1:p.Ser8Pro
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.22T>C
  hgvsp: ENSP00000339221.6:p.Ser8Pro
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.943T>C
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.22T>C
  hgvsp: ENSP00000378796.3:p.Ser8Pro
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.22T>C
  hgvsp: ENSP00000353600.7:p.Ser8Pro
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47035T>C
  variant of: http://identifiers.org/hgnc/31914
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11071
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10067
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23328
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser8Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-29472731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472731
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472731
    reference: chr 16
allele count: 23
allele frequency: 6.635891517599538e-3
allele num: 3466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.25C>T
  hgvsp: ENSP00000455063.1:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47032C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.946C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.25C>T
  hgvsp: ENSP00000456834.1:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.25C>T
  hgvsp: ENSP00000339221.6:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.25C>T
  hgvsp: ENSP00000378796.3:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.25C>T
  hgvsp: ENSP00000353600.7:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 14688
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34590
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10890
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Arg9Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

16-29472735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472735
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472735
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 3878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.29C>T
  hgvsp: ENSP00000456834.1:p.Pro10Leu
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.29C>T
  hgvsp: ENSP00000339221.6:p.Pro10Leu
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.29C>T
  hgvsp: ENSP00000378796.3:p.Pro10Leu
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.29C>T
  hgvsp: ENSP00000455063.1:p.Pro10Leu
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.950C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.29C>T
  hgvsp: ENSP00000353600.7:p.Pro10Leu
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47028C>T
  variant of: http://identifiers.org/hgnc/31914
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33989
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18640
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32770
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro10Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

16-29472736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472736
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472736
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 3858
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.30G>A
  hgvsp: ENST00000395400.3:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.30G>A
  hgvsp: ENST00000569544.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47027G>A
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.30G>A
  hgvsp: ENST00000344620.6:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.951G>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.30G>A
  hgvsp: ENST00000565290.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.30G>A
  hgvsp: ENST00000360423.7:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19333
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17726
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32463
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro10Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

16-29472748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472748
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472748
    reference: chr 16
allele count: 3
allele frequency: 7.692307692307692e-4
allele num: 3900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.42C>T
  hgvsp: ENST00000565290.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.42C>T
  hgvsp: ENST00000344620.6:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47015C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.42C>T
  hgvsp: ENST00000360423.7:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.42C>T
  hgvsp: ENST00000395400.3:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.963C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.42C>T
  hgvsp: ENST00000569544.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19020
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Tyr14Tyr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

16-29472749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472749
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472749
    reference: chr 16
allele count: 5
allele frequency: 1.293995859213251e-3
allele num: 3864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.43G>A
  hgvsp: ENSP00000455063.1:p.Val15Met
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47014G>A
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.43G>A
  hgvsp: ENSP00000378796.3:p.Val15Met
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.43G>A
  hgvsp: ENSP00000456834.1:p.Val15Met
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.43G>A
  hgvsp: ENSP00000339221.6:p.Val15Met
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.43G>A
  hgvsp: ENSP00000353600.7:p.Val15Met
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.964G>A
  variant of: http://identifiers.org/hgnc/48353
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 33993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18591
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16752
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Val15Met
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

16-29472754-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472754
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472754
    reference: chr 16
allele count: 2
allele frequency: 5.402485143165856e-4
allele num: 3702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.48G>A
  hgvsp: ENST00000360423.7:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.969G>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.48G>A
  hgvsp: ENST00000395400.3:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.48G>A
  hgvsp: ENST00000344620.6:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.48G>A
  hgvsp: ENST00000569544.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.48G>A
  hgvsp: ENST00000565290.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47009G>A
  variant of: http://identifiers.org/hgnc/31914
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34809
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17090
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys16Lys
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-29472762-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472762
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472762
    reference: chr 16
allele count: 1
allele frequency: 3.115264797507788e-4
allele num: 3210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.56C>T
  hgvsp: ENSP00000353600.7:p.Pro19Leu
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.977C>T
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.56C>T
  hgvsp: ENSP00000378796.3:p.Pro19Leu
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47001C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.56C>T
  hgvsp: ENSP00000455063.1:p.Pro19Leu
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.56C>T
  hgvsp: ENSP00000339221.6:p.Pro19Leu
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.56C>T
  hgvsp: ENSP00000456834.1:p.Pro19Leu
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14458
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35532
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro19Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

16-29472763-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472763
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472763
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 3018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.57G>A
  hgvsp: ENST00000569544.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.57G>A
  hgvsp: ENST00000565290.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.57G>A
  hgvsp: ENST00000344620.6:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.57G>A
  hgvsp: ENST00000360423.7:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.57G>A
  hgvsp: ENST00000395400.3:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.978G>A
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-47000G>A
  variant of: http://identifiers.org/hgnc/31914
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14080
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11667
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro19Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-29472811-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472811
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472811
    reference: chr 16
allele count: 210
allele frequency: 2.375565610859728e-1
allele num: 884
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.105A>G
  hgvsp: ENST00000395400.3:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-46952A>G
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.1026A>G
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.105A>G
  hgvsp: ENST00000360423.7:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.105A>G
  hgvsp: ENST00000565290.1:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.105A>G
  hgvsp: ENST00000344620.6:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.105A>G
  hgvsp: ENST00000569544.1:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30004
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26257
  bin: 2.5e0
  variant carriers: 526
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 7.5e0
  variant carriers: 1021
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 6.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 6.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 9397
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 33
hgvs: p.Gln35Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

16-29472888-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29472888
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29472888
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.148+34C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-46875C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.148+34C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.148+34C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.148+34C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.148+34C>T
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.1069+34C>T
  variant of: http://identifiers.org/hgnc/48353
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12459
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

16-29473163-C-CCACT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29473163
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29473167
    reference: chr 16
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: CCACT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000353600
  ensembl transcript: ENST00000360423
  gene symbol: SULT1A4
  hgvsc: ENST00000360423.7:c.275-10_275-7dupCACT
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-46599_5992-46596dupCACT
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000457597
  ensembl transcript: ENST00000563944
  gene symbol: SULT1A4
  hgvsc: ENST00000563944.1:c.40-10_40-7dupCACT
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000455063
  ensembl transcript: ENST00000569544
  gene symbol: SULT1A4
  hgvsc: ENST00000569544.1:c.250-10_250-7dupCACT
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260280
  ensembl transcript: ENST00000564950
  gene symbol: SLX1B-SULT1A4
  hgvsc: ENST00000564950.1:n.1196-10_1196-7dupCACT
  variant of: http://identifiers.org/hgnc/48353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000339221
  ensembl transcript: ENST00000344620
  gene symbol: SULT1A4
  hgvsc: ENST00000344620.6:c.275-10_275-7dupCACT
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213648
  ensembl transcript: ENST00000562941
  gene symbol: SULT1A4
  hgvsc: ENST00000562941.1:n.115_118dupCACT
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000456834
  ensembl transcript: ENST00000565290
  gene symbol: SULT1A4
  hgvsc: ENST00000565290.1:c.275-10_275-7dupCACT
  variant of: http://identifiers.org/hgnc/30004
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213648
  ensembl protein: ENSP00000378796
  ensembl transcript: ENST00000395400
  gene symbol: SULT1A4
  hgvsc: ENST00000395400.3:c.275-10_275-7dupCACT
  variant of: http://identifiers.org/hgnc/30004
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-29476496-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29476496
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29476496
    reference: chr 16
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000258150
  ensembl protein: ENSP00000449334
  ensembl transcript: ENST00000549950
  gene symbol: RP11-345J4.3
  hgvsc: ENST00000549950.1:c.*46A>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-43267T>G
  variant of: http://identifiers.org/hgnc/31914
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

16-29496768-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29496768
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29496768
    reference: chr 16
allele count: 1
allele frequency: 1.666666666666667e-1
allele num: 6
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-22995G>C
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.1029C>G
  hgvsp: ENST00000550665.1:c.1029C>G(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000346572
  ensembl transcript: ENST00000354563
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000354563.5:c.507C>G
  hgvsp: ENST00000354563.5:c.507C>G(p.%3D)
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 900
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro169Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

16-29496826-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29496826
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29496826
    reference: chr 16
allele count: 1
allele frequency: 4.887585532746823e-4
allele num: 2046
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000346572
  ensembl transcript: ENST00000354563
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000354563.5:c.449C>G
  hgvsp: ENSP00000346572.5:p.Pro150Arg
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-22937G>C
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.971C>G
  hgvsp: ENSP00000447597.1:p.Pro324Arg
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 183
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro150Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

16-29496830-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29496830
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29496830
    reference: chr 16
allele count: 2
allele frequency: 9.615384615384616e-4
allele num: 2080
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-22933G>A
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.967C>T
  hgvsp: ENSP00000447597.1:p.Pro323Ser
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000346572
  ensembl transcript: ENST00000354563
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000354563.5:c.445C>T
  hgvsp: ENSP00000346572.5:p.Pro149Ser
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 1017
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 741
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro149Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

16-29496834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29496834
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29496834
    reference: chr 16
allele count: 335
allele frequency: 1.605944391179291e-1
allele num: 2086
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-22929C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.963G>A
  hgvsp: ENST00000550665.1:c.963G>A(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000346572
  ensembl transcript: ENST00000354563
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000354563.5:c.441G>A
  hgvsp: ENST00000354563.5:c.441G>A(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.75e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 12
hgvs: p.Lys147Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-29496842-TATC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29496842
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29496839
    reference: chr 16
allele count: 1
allele frequency: 4.055150040551501e-4
allele num: 2466
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-22917_5992-22915delATC
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.952_954delGAT
  hgvsp: ENSP00000447597.1:p.Asp318del
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000346572
  ensembl transcript: ENST00000354563
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000354563.5:c.430_432delGAT
  hgvsp: ENSP00000346572.5:p.Asp144del
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp144del
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: TATC
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP

16-29496846-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29496846
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29496846
    reference: chr 16
allele count: 67
allele frequency: 2.695092518101368e-2
allele num: 2486
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000346572
  ensembl transcript: ENST00000354563
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000354563.5:c.429T>C
  hgvsp: ENST00000354563.5:c.429T>C(p.%3D)
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-22917A>G
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.951T>C
  hgvsp: ENST00000550665.1:c.951T>C(p.%3D)
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Asp143Asp
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-29496849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29496849
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29496849
    reference: chr 16
allele count: 68
allele frequency: 2.689873417721519e-2
allele num: 2528
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000346572
  ensembl transcript: ENST00000354563
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000354563.5:c.426G>A
  hgvsp: ENST00000354563.5:c.426G>A(p.%3D)
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-22914C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.948G>A
  hgvsp: ENST00000550665.1:c.948G>A(p.%3D)
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 6.25e1
  variant carriers: 2
hgvs: p.Ala142Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

16-29496855-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29496855
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29496855
    reference: chr 16
allele count: 1
allele frequency: 3.855050115651503e-4
allele num: 2594
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-22908G>C
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000346572
  ensembl transcript: ENST00000354563
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000354563.5:c.420C>G
  hgvsp: ENST00000354563.5:c.420C>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.942C>G
  hgvsp: ENST00000550665.1:c.942C>G(p.%3D)
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro140Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

16-29496877-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29496877
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29496877
    reference: chr 16
allele count: 2
allele frequency: 1.210653753026634e-3
allele num: 1652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.920G>C
  hgvsp: ENSP00000447597.1:p.Cys307Ser
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000346572
  ensembl transcript: ENST00000354563
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000354563.5:c.398G>C
  hgvsp: ENSP00000346572.5:p.Cys133Ser
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-22886C>G
  variant of: http://identifiers.org/hgnc/31914
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys133Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

16-29516833-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29516833
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29516833
    reference: chr 16
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449726
  ensembl transcript: ENST00000550690
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550690.1:c.81T>C
  hgvsp: ENST00000550690.1:c.81T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449771
  ensembl transcript: ENST00000551448
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000551448.1:c.81T>C
  hgvsp: ENST00000551448.1:c.81T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.81T>C
  hgvsp: ENST00000550665.1:c.81T>C(p.%3D)
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-2930A>G
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449585
  ensembl transcript: ENST00000547235
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000547235.1:c.5T>C
  hgvsp: ENST00000547235.1:c.5T>C(p.%3D)
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His27His
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

16-29516898-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29516898
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29516898
    reference: chr 16
allele count: 1
allele frequency: 3.703703703703704e-4
allele num: 2700
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449726
  ensembl transcript: ENST00000550690
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550690.1:c.16A>C
  hgvsp: ENSP00000449726.1:p.Ile6Leu
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-2865T>G
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.16A>C
  hgvsp: ENSP00000447597.1:p.Ile6Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449771
  ensembl transcript: ENST00000551448
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000551448.1:c.16A>C
  hgvsp: ENSP00000449771.1:p.Ile6Leu
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4567
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile6Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-29516922-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29516922
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29516922
    reference: chr 16
allele count: 1
allele frequency: 2.840909090909091e-4
allele num: 3520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449771
  ensembl transcript: ENST00000551448
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000551448.1:c.-9A>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-2841T>C
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449726
  ensembl transcript: ENST00000550690
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550690.1:c.-9A>G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.-9A>G
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5006
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-29516924-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29516924
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29516924
    reference: chr 16
allele count: 10
allele frequency: 2.808988764044944e-3
allele num: 3560
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-2839A>G
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449771
  ensembl transcript: ENST00000551448
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000551448.1:c.-11T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449726
  ensembl transcript: ENST00000550690
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550690.1:c.-11T>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.-11T>C
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4960
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

16-29516928-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29516928
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29516928
    reference: chr 16
allele count: 39
allele frequency: 1.064410480349345e-2
allele num: 3664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.-15G>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449726
  ensembl transcript: ENST00000550690
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550690.1:c.-15G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-2835C>G
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449771
  ensembl transcript: ENST00000551448
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000551448.1:c.-15G>C
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4847
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 6.75e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

16-29516947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29516947
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29516947
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 4194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449771
  ensembl transcript: ENST00000551448
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000551448.1:c.-34G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-2816C>T
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.-34G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449726
  ensembl transcript: ENST00000550690
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550690.1:c.-34G>A
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4683
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

16-29516952-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29516952
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29516952
    reference: chr 16
allele count: 3
allele frequency: 6.802721088435374e-4
allele num: 4410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449726
  ensembl transcript: ENST00000550690
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550690.1:c.-38-1G>C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.-38-1G>C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449771
  ensembl transcript: ENST00000551448
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000551448.1:c.-38-1G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-2811C>G
  variant of: http://identifiers.org/hgnc/31914
canonical: false
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4721
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
hgvs: c.-38-1G>C
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-29516958-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29516958
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29516958
    reference: chr 16
allele count: 54
allele frequency: 1.167315175097276e-2
allele num: 4626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449771
  ensembl transcript: ENST00000551448
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000551448.1:c.-38-7C>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.-38-7C>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449726
  ensembl transcript: ENST00000550690
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550690.1:c.-38-7C>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-2805G>C
  variant of: http://identifiers.org/hgnc/31914
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4530
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
hgvs: c.-38-7C>G
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

16-29516962-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29516962
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29516963
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 5014
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449726
  ensembl transcript: ENST00000550690
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550690.1:c.-38-12dupA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000449771
  ensembl transcript: ENST00000551448
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000551448.1:c.-38-12dupA
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198106
  ensembl transcript: ENST00000398878
  gene symbol: SNX29P2
  hgvsc: ENST00000398878.3:n.5992-2797dupT
  variant of: http://identifiers.org/hgnc/31914
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169203
  ensembl protein: ENSP00000447597
  ensembl transcript: ENST00000550665
  gene symbol: RP11-231C14.4
  hgvsc: ENST00000550665.1:c.-38-12dupA
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4205
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

16-29556470-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29556470
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29556470
    reference: chr 16
allele count: 1
allele frequency: 2.897710808461316e-5
allele num: 34510
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205534
  ensembl transcript: ENST00000566127
  gene symbol: RP11-345J4.8
  hgvsc: ENST00000566127.1:n.1879+30C>T
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12790
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34697
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3931
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1930
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 320
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 3.591954022988506e-4
  allele num: 2784
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-29556475-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29556475
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29556475
    reference: chr 16
allele count: 14
allele frequency: 2.205071664829107e-4
allele num: 63490
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205534
  ensembl transcript: ENST00000566127
  gene symbol: RP11-345J4.8
  hgvsc: ENST00000566127.1:n.1879+25T>G
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27580
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25991
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24388
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 2.296738631143776e-4
  allele num: 4354
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 512
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5202
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-29556479-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29556479
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29556479
    reference: chr 16
allele count: 2
allele frequency: 2.374338153239784e-5
allele num: 84234
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205534
  ensembl transcript: ENST00000566127
  gene symbol: RP11-345J4.8
  hgvsc: ENST00000566127.1:n.1879+21A>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37762
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16032
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
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genotype quality: GenotypeQuality
  all individuals: 672
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 463
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3813
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 35904
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 190
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genotype quality: GenotypeQuality
  all individuals: 410
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 658
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6640
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.852537977028529e-4
  allele num: 5398
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

16-29556479-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29556479
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29556478
    reference: chr 16
allele count: 2
allele frequency: 2.374338153239784e-5
allele num: 84234
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205534
  ensembl transcript: ENST00000566127
  gene symbol: RP11-345J4.8
  hgvsc: ENST00000566127.1:n.1879+20delC
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 16032
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 24
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37762
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3813
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 15285
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
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genotype quality: GenotypeQuality
  all individuals: 35904
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 333
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 172
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num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6640
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 4.2865103519225e-5
  allele num: 46658
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7248
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: TG
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD

16-29556480-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29556480
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29556480
    reference: chr 16
allele count: 1
allele frequency: 1.141265892127548e-5
allele num: 87622
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205534
  ensembl transcript: ENST00000566127
  gene symbol: RP11-345J4.8
  hgvsc: ENST00000566127.1:n.1879+20C>T
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39096
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 240
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 171
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 316
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5404
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 48518
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5612
  num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

16-29556496-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29556496
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29556496
    reference: chr 16
allele count: 1
allele frequency: 8.835795575033575e-6
allele num: 113176
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205534
  ensembl transcript: ENST00000566127
  gene symbol: RP11-345J4.8
  hgvsc: ENST00000566127.1:n.1879+4A>T
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 42
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
hgvs: n.1879+4A>T
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16154
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7574
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

16-29556496-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29556496
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29556496
    reference: chr 16
allele count: 1
allele frequency: 8.835795575033575e-6
allele num: 113176
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205534
  ensembl transcript: ENST00000566127
  gene symbol: RP11-345J4.8
  hgvsc: ENST00000566127.1:n.1879+4A>G
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 50803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50465
  bin: 6.25e1
  variant carriers: 0
hgvs: n.1879+4A>G
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11146
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 852
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

16-29556511-C-CGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29556511
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29556514
    reference: chr 16
allele count: 1
allele frequency: 8.578389321620972e-6
allele num: 116572
alternate allele: CGAG
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205534
  ensembl transcript: ENST00000566127
  gene symbol: RP11-345J4.8
  hgvsc: ENST00000566127.1:n.1865_1867dupCTC
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4756
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52242
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6590
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8586
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8292
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

16-29556512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29556512
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29556512
    reference: chr 16
allele count: 2
allele frequency: 1.715412985676302e-5
allele num: 116590
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205534
  ensembl transcript: ENST00000566127
  gene symbol: RP11-345J4.8
  hgvsc: ENST00000566127.1:n.1867C>T
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4761
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8294
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 886
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11482
  num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

16-29556515-T-C
type: Variant
location: Region
allele count: 2
allele frequency: 1.714883473667964e-5
allele num: 116626
alternate allele: C
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 1120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1755
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5352
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.298701298701299e-3
allele num: 770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5542
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.296e1

MQRankSum
type: SiteQuality
SIO_000300: -1.094e0

FS
type: SiteQuality
SIO_000300: 7.033e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.137e0

QD
type: SiteQuality
SIO_000300: 3.22e0

DP
type: SiteQuality
SIO_000300: 1.75919e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.767e0

VQSLOD
type: SiteQuality
SIO_000300: -6.292e0

GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.998001998001998e-4
allele num: 10010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13782
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.12e0

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

MQ
type: SiteQuality
SIO_000300: 2.297e1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

DP
type: SiteQuality
SIO_000300: 1.723741e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8295
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5298
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.255840951966333e-5
allele num: 13782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5494
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.723741e6

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQ
type: SiteQuality
SIO_000300: 2.297e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7848
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.063603488619443e-4
allele num: 9402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5432
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

MQ
type: SiteQuality
SIO_000300: 2.803e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

QD
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 1.665565e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.001e0

GenotypeQuality
all individuals: 428
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.189359028068705e-4
allele num: 4774
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12966
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.091941471937104e-4
allele num: 9158
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.543749e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

MQ
type: SiteQuality
SIO_000300: 2.288e1

VQSLOD
type: SiteQuality
SIO_000300: -6.079e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
all individuals: 269
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 14892
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.471656817684395e-5
allele num: 54828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.289e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.238e0

QD
type: SiteQuality
SIO_000300: 4.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.246e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

DP
type: SiteQuality
SIO_000300: 1.525503e6

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4537
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.638522427440633e-4
allele num: 7580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.213e0

FS
type: SiteQuality
SIO_000300: 5.173e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.293e0

MQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQ
type: SiteQuality
SIO_000300: 2.292e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.007e0

DP
type: SiteQuality
SIO_000300: 1.426078e6

QD
type: SiteQuality
SIO_000300: 2.99e0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 58

GenotypeQuality
all individuals: 2321
bin: 9.75e1
variant carriers: 2269

GenotypeQuality
all individuals: 4019
bin: 6.75e1
variant carriers: 56

GenotypeQuality
all individuals: 17792
bin: 2.25e1
variant carriers: 50

GenotypeQuality
all individuals: 645
bin: 3.75e1
variant carriers: 72

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 59

GenotypeQuality
all individuals: 579
bin: 1.75e1
variant carriers: 58

GenotypeQuality
all individuals: 2396
bin: 2.75e1
variant carriers: 49

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 65

GenotypeQuality
all individuals: 900
bin: 7.25e1
variant carriers: 45

GenotypeQuality
all individuals: 868
bin: 7.75e1
variant carriers: 53

GenotypeQuality
all individuals: 14246
bin: 6.25e1
variant carriers: 62

South Asian
type: Population
allele count: 153
allele frequency: 1.364609347128077e-2
allele num: 11212
num of homozygotes: 4

Latino
type: Population
allele count: 163
allele frequency: 2.383737935068734e-2
allele num: 6838
num of homozygotes: 11

African
type: Population
allele count: 72
allele frequency: 8.341056533827619e-3
allele num: 8632
num of homozygotes: 3

East Asian
type: Population
allele count: 1
allele frequency: 2.596053997923157e-4
allele num: 3852
num of homozygotes: 0

Other
type: Population
allele count: 20
allele frequency: 3.174603174603174e-2
allele num: 630
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 211
allele frequency: 4.758682904826342e-2
allele num: 4434
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 2548
allele frequency: 5.174444579830226e-2
allele num: 49242
num of homozygotes: 100

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.79e-2

MQ
type: SiteQuality
SIO_000300: 2.285e1

VQSLOD
type: SiteQuality
SIO_000300: -4.067e0

DP
type: SiteQuality
SIO_000300: 1.307012e6

QD
type: SiteQuality
SIO_000300: 4.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

GenotypeQuality
all individuals: 9624
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 249
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3959
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6438
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.687449610319807e-5
allele num: 37210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.335e1

VQSLOD
type: SiteQuality
SIO_000300: -6.141e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 9.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

QD
type: SiteQuality
SIO_000300: 1.201e1

DP
type: SiteQuality
SIO_000300: 8.21222e5

GenotypeQuality
all individuals: 63
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10969
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5177
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1906
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3640
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7062
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 8.695652173913044e-4
allele num: 5750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32524
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 6.62e-1

DP
type: SiteQuality
SIO_000300: 7.35304e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

MQ
type: SiteQuality
SIO_000300: 2.413e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

QD
type: SiteQuality
SIO_000300: 1.313e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 1426
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4210
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 959
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 175
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3428
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1255
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1902
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 13098
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6240
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 7.25e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 1.952069193344946e-3
allele num: 33298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 2.09643605870021e-3
allele num: 2862
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.385041551246538e-4
allele num: 7220
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

FS
type: SiteQuality
SIO_000300: 1.315e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 6.99637e5

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.944e0

MQ
type: SiteQuality
SIO_000300: 2.255e1

QD
type: SiteQuality
SIO_000300: 2.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

GenotypeQuality
all individuals: 1022
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19208
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3408
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10990
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33324
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

MQ
type: SiteQuality
SIO_000300: 2.2e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.61684e5

VQSLOD
type: SiteQuality
SIO_000300: -6.746e0

QD
type: SiteQuality
SIO_000300: 1.532e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2471
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.010597302504817e-5
allele num: 33216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.375e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

QD
type: SiteQuality
SIO_000300: 2.04e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.82e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.843e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33550
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.380452788514633e-4
allele num: 7244
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.095e0

MQRankSum
type: SiteQuality
SIO_000300: -1.076e0

MQ
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SIO_000300: 2.2e1

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

QD
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 7.20189e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.818342151675486e-5
allele num: 34020
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.256e0

VQSLOD
type: SiteQuality
SIO_000300: -8.121e0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 7.25e0

ReadPosRankSum
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SIO_000300: -1.004e0

DP
type: SiteQuality
SIO_000300: 7.41524e5

MQ
type: SiteQuality
SIO_000300: 2.2e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.875785886362301e-5
allele num: 34038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3700
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.2e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.405e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.044e0

QD
type: SiteQuality
SIO_000300: 2.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 7.45202e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.831583858175881e-5
allele num: 34296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7226
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.432e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.87e0

DP
type: SiteQuality
SIO_000300: 7.52001e5

MQ
type: SiteQuality
SIO_000300: 2.2e1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 4.744958481613286e-3
allele num: 1686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33222
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.20355e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

MQ
type: SiteQuality
SIO_000300: 2.2e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.711e0

QD
type: SiteQuality
SIO_000300: 5.24e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.010053578953705e-5
allele num: 33222
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7114
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1686
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -2.711e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.20355e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2044
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.716981132075472e-3
allele num: 848
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African
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3774
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 20976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1850
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

DP
type: SiteQuality
SIO_000300: 4.45813e5

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.1e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 31
allele frequency: 7.185906351414001e-3
allele num: 4314
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Other
type: Population
allele count: 1
allele frequency: 4.901960784313725e-3
allele num: 204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.708e0

DP
type: SiteQuality
SIO_000300: 3.78698e5

QD
type: SiteQuality
SIO_000300: 3.86e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.76e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
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SIO_000300: 3.78698e5

MQ
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.708e0

QD
type: SiteQuality
SIO_000300: 3.86e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14672
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 2548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1262
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.99e-2

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 3.56076e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.014e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13732
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 4.262574595055413e-4
allele num: 2346
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 4.166666666666667e-3
allele num: 480
num of homozygotes: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3758
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.21e-2

QD
type: SiteQuality
SIO_000300: 3.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.117e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

DP
type: SiteQuality
SIO_000300: 3.45289e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 9.18133129303749e-4
allele num: 13070
num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.75330396475771e-4
allele num: 3632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.28e-2

MQ
type: SiteQuality
SIO_000300: 2.2e1

DP
type: SiteQuality
SIO_000300: 3.35595e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.15e0

VQSLOD
type: SiteQuality
SIO_000300: -6.091e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3756
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.311248073959939e-3
allele num: 1298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.86e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 1.81321e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

QD
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 715
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2880
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.795332136445242e-3
allele num: 1114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.260000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 1.61394e5

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.245e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.909e0

QD
type: SiteQuality
SIO_000300: 9.4e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 1.785714285714286e-3
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.27e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.59936e5

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 165
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1170
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 608
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South Asian
type: Population
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VQSLOD
type: SiteQuality
SIO_000300: -4.549e0

DP
type: SiteQuality
SIO_000300: 9.0621e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.65e-2

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.2e1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 9.868421052631578e-3
allele num: 304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 3.003003003003003e-2
allele num: 1332
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.335311572700297e-2
allele num: 674
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 5.223880597014925e-2
allele num: 134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.25e-1
allele num: 96
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 2.422145328719723e-2
allele num: 578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.524e1

MQRankSum
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SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.656e0

DP
type: SiteQuality
SIO_000300: 2.62215e5

FS
type: SiteQuality
SIO_000300: 1.69475e2

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1908
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South Asian
type: Population
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allele frequency: 1.661129568106312e-3
allele num: 602
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 3.255e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.12e-2

DP
type: SiteQuality
SIO_000300: 2.0595e5

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.93e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.634e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 3.053e1

DP
type: SiteQuality
SIO_000300: 1.66528e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 5.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele frequency: 3.846153846153846e-2
allele num: 26
num of homozygotes: 0

Latino
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allele frequency: 5.0e-2
allele num: 20
num of homozygotes: 0

European (Finnish)
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allele count: 7
allele frequency: 5.0e-1
allele num: 14
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.246376811594203e-3
allele num: 138
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.272727272727273e-2
allele num: 88
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 1.666666666666667e-2
allele num: 180
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.263e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 3.151e1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.28e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.495e0

QD
type: SiteQuality
SIO_000300: 2.5e0

DP
type: SiteQuality
SIO_000300: 1.54719e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 564
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

DP
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SIO_000300: 1.71045e5

VQSLOD
type: SiteQuality
SIO_000300: -2.213e0

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQ
type: SiteQuality
SIO_000300: 3.151e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.35e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 1.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.801801801801802e-3
allele num: 1110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

African
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allele count: 18
allele frequency: 3.225806451612903e-2
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 2.890173410404624e-3
allele num: 1038
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 2.15807e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.28e-2

QD
type: SiteQuality
SIO_000300: 4.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 3.11e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.17e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.357e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.859999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

QD
type: SiteQuality
SIO_000300: 6.23e0

MQ
type: SiteQuality
SIO_000300: 3.151e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

DP
type: SiteQuality
SIO_000300: 2.47355e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.51636e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

MQ
type: SiteQuality
SIO_000300: 3.269e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-2

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1322
num of homozygotes: 0

African
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allele count: 3
allele frequency: 4.373177842565598e-3
allele num: 686
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 210
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South Asian
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allele frequency: 0.0e0
allele num: 1160
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DP
type: SiteQuality
SIO_000300: 2.48609e5

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
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SIO_000300: -7.04e-2

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 2.945e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

African
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allele count: 2
allele frequency: 2.941176470588235e-3
allele num: 680
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 3.787878787878788e-3
allele num: 264
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 8.665511265164644e-4
allele num: 1154
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 7.656967840735069e-4
allele num: 1306
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 220
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East Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 3.307e1

FS
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 240
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.639344262295082e-3
allele num: 1220
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BaseQRankSum
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MQRankSum
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FS
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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allele num: 154
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Other
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allele frequency: 0.0e0
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Latino
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South Asian
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allele frequency: 9.746588693957114e-4
allele num: 1026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.917e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 2.15707e5

MQ
type: SiteQuality
SIO_000300: 3.144e1

GenotypeQuality
all individuals: 35625
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 968
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.851e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 3.151e1

DP
type: SiteQuality
SIO_000300: 2.13289e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.260000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 7.16e0

GenotypeQuality
all individuals: 1355
bin: 2.25e1
variant carriers: 166

GenotypeQuality
all individuals: 318
bin: 1.25e1
variant carriers: 72

GenotypeQuality
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bin: 7.25e1
variant carriers: 66

GenotypeQuality
all individuals: 369
bin: 1.75e1
variant carriers: 118

GenotypeQuality
all individuals: 19795
bin: 7.5e0
variant carriers: 169

GenotypeQuality
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bin: 4.75e1
variant carriers: 81

GenotypeQuality
all individuals: 179
bin: 8.25e1
variant carriers: 179

GenotypeQuality
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bin: 9.75e1
variant carriers: 212

GenotypeQuality
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bin: 7.75e1
variant carriers: 92

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 20

GenotypeQuality
all individuals: 116
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variant carriers: 114

African
type: Population
allele count: 22
allele frequency: 9.090909090909091e-2
allele num: 242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 119
allele frequency: 3.838709677419355e-1
allele num: 310
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.304347826086956e-1
allele num: 46
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 2.419354838709677e-1
allele num: 62
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 3.571428571428572e-1
allele num: 14
num of homozygotes: 0

South Asian
type: Population
allele count: 43
allele frequency: 2.087378640776699e-1
allele num: 206
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.659e0

MQ
type: SiteQuality
SIO_000300: 3.13e1

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 1.16139e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.790000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.332e1

GenotypeQuality
all individuals: 206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8267
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

QD
type: SiteQuality
SIO_000300: 5.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 3.151e1

VQSLOD
type: SiteQuality
SIO_000300: -6.273e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-1

DP
type: SiteQuality
SIO_000300: 3.1375e4

GenotypeQuality
all individuals: 1
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variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.571e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.095e3

MQ
type: SiteQuality
SIO_000300: 3.055e1

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.075e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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DP
type: SiteQuality
SIO_000300: 3.8e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.269e1

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

QD
type: SiteQuality
SIO_000300: 2.33e1

VQSLOD
type: SiteQuality
SIO_000300: 9.59e-1

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.0e-1
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.251e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.17e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.279e0

DP
type: SiteQuality
SIO_000300: 2.217e3

MQRankSum
type: SiteQuality
SIO_000300: -1.866e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 7.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 7
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.155172413793103e-3
allele num: 464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
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FS
type: SiteQuality
SIO_000300: 5.078e0

MQ
type: SiteQuality
SIO_000300: 2.272e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.641e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.57e0

DP
type: SiteQuality
SIO_000300: 3.0126e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

GenotypeQuality
all individuals: 183
bin: 6.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.219409282700422e-3
allele num: 474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
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MQ
type: SiteQuality
SIO_000300: 2.247e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 3.0234e4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.024e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-2

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

GenotypeQuality
all individuals: 310
bin: 6.25e1
variant carriers: 17

European (Finnish)
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allele count: 1
allele frequency: 1.0e-1
allele num: 10
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.75e-1
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
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allele count: 256
allele frequency: 2.245614035087719e-1
allele num: 1140
num of homozygotes: 0

Latino
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allele frequency: 1.1875e-1
allele num: 160
num of homozygotes: 0

African
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allele count: 13
allele frequency: 2.73109243697479e-2
allele num: 476
num of homozygotes: 0

East Asian
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allele count: 8
allele frequency: 8.0e-2
allele num: 100
num of homozygotes: 0

South Asian
type: Population
allele count: 35
allele frequency: 1.822916666666667e-1
allele num: 192
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.417e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

MQ
type: SiteQuality
SIO_000300: 2.262e1

VQSLOD
type: SiteQuality
SIO_000300: -6.31e-1

DP
type: SiteQuality
SIO_000300: 3.5972e4

FS
type: SiteQuality
SIO_000300: 6.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 3.24e0

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.012622720897616e-4
allele num: 1426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 228
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.98e-2

MQ
type: SiteQuality
SIO_000300: 2.22e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

QD
type: SiteQuality
SIO_000300: 7.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 3.5021e4

GenotypeQuality
all individuals: 929
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 64
allele frequency: 1.295546558704453e-1
allele num: 494
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.142857142857142e-2
allele num: 14
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.983240223463687e-4
allele num: 1432
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.314e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 4.42e0

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQ
type: SiteQuality
SIO_000300: 2.263e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

DP
type: SiteQuality
SIO_000300: 3.5661e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

GenotypeQuality
all individuals: 56
bin: 7.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.052631578947368e-2
allele num: 190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
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African
type: Population
allele count: 66
allele frequency: 1.240601503759398e-1
allele num: 532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

FS
type: SiteQuality
SIO_000300: 6.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.631e0

QD
type: SiteQuality
SIO_000300: 5.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

DP
type: SiteQuality
SIO_000300: 3.5939e4

MQ
type: SiteQuality
SIO_000300: 2.263e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.748251748251748e-3
allele num: 572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.512e0

MQ
type: SiteQuality
SIO_000300: 2.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.33e-1

QD
type: SiteQuality
SIO_000300: 2.21e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.708e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.57e-1

DP
type: SiteQuality
SIO_000300: 3.5879e4

MQRankSum
type: SiteQuality
SIO_000300: -1.604e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.13e-2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 914
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 3.448275862068965e-2
allele num: 58
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.83e-1

QD
type: SiteQuality
SIO_000300: 4.84e0

FS
type: SiteQuality
SIO_000300: 1.186e0

VQSLOD
type: SiteQuality
SIO_000300: -5.429e0

DP
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SIO_000300: 3.614e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.53e-1

MQ
type: SiteQuality
SIO_000300: 2.507e1

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.594e1

DP
type: SiteQuality
SIO_000300: 8.47e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.72e-2

MQ
type: SiteQuality
SIO_000300: 2.9e1

VQSLOD
type: SiteQuality
SIO_000300: -4.349e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.045949214026602e-4
allele num: 1654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQ
type: SiteQuality
SIO_000300: 3.342e1

VQSLOD
type: SiteQuality
SIO_000300: -4.181e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

QD
type: SiteQuality
SIO_000300: 2.88e0

MQRankSum
type: SiteQuality
SIO_000300: -2.266e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.93e-2

DP
type: SiteQuality
SIO_000300: 4.4685e4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2140
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.65016501650165e-3
allele num: 606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.038e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.33e-2

FS
type: SiteQuality
SIO_000300: 1.774e0

MQ
type: SiteQuality
SIO_000300: 3.366e1

QD
type: SiteQuality
SIO_000300: 2.82e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 6.3638e4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.583e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 6

GenotypeQuality
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bin: 6.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 4.63821892393321e-3
allele num: 2156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
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VQSLOD
type: SiteQuality
SIO_000300: -3.375e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

MQ
type: SiteQuality
SIO_000300: 3.361e1

DP
type: SiteQuality
SIO_000300: 6.5057e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

FS
type: SiteQuality
SIO_000300: 7.71e-1

QD
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 76
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 42
bin: 8.25e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
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allele count: 35
allele frequency: 1.57942238267148e-2
allele num: 2216
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 422
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.854368932038835e-3
allele num: 618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.53e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQ
type: SiteQuality
SIO_000300: 3.36e1

QD
type: SiteQuality
SIO_000300: 2.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.421e0

DP
type: SiteQuality
SIO_000300: 6.852e4

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 36
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.302e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.71e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.72e0

DP
type: SiteQuality
SIO_000300: 7.7251e4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 7.51e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.197126895450918e-3
allele num: 2506
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.28e0

DP
type: SiteQuality
SIO_000300: 7.9971e4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 3.35e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

FS
type: SiteQuality
SIO_000300: 4.057e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-2

GenotypeQuality
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bin: 9.75e1
variant carriers: 46

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
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allele count: 53
allele frequency: 7.614942528735633e-2
allele num: 696
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 4.950495049504951e-3
allele num: 202
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2596
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 52
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 114
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East Asian
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allele frequency: 0.0e0
allele num: 208
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 758
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MQRankSum
type: SiteQuality
SIO_000300: 7.57e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.5315e4

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

FS
type: SiteQuality
SIO_000300: 5.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.51e-2

MQ
type: SiteQuality
SIO_000300: 3.367e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 948
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 214
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 720
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2690
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 218
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

Other
type: Population
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allele num: 56
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DP
type: SiteQuality
SIO_000300: 8.9233e4

QD
type: SiteQuality
SIO_000300: 2.202e1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.08e-2

MQ
type: SiteQuality
SIO_000300: 3.7e1

FS
type: SiteQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19172
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4276
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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allele num: 3104
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QD
type: SiteQuality
SIO_000300: 4.0e0

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -9.900000000000001e-3

BaseQRankSum
type: SiteQuality
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ClippingRankSum
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DP
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.572e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4556
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European (Non-Finnish)
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allele count: 12
allele frequency: 3.388681802778719e-4
allele num: 35412
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European (Finnish)
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allele frequency: 2.355157795572303e-4
allele num: 4246
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South Asian
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MQ
type: SiteQuality
SIO_000300: 2.705e1

MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

European (Non-Finnish)
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allele count: 1
allele frequency: 2.14325517596125e-5
allele num: 46658
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5268
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.016113e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 4.224e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.31e-1

QD
type: SiteQuality
SIO_000300: 9.94e0

MQ
type: SiteQuality
SIO_000300: 2.935e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12364
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 2.935e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.016113e6

FS
type: SiteQuality
SIO_000300: 4.224e0

QD
type: SiteQuality
SIO_000300: 9.94e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.463700234192037e-4
allele num: 6832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12846
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.02e-1

MQ
type: SiteQuality
SIO_000300: 2.899e1

VQSLOD
type: SiteQuality
SIO_000300: -4.825e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.666e0

QD
type: SiteQuality
SIO_000300: 7.03e0

DP
type: SiteQuality
SIO_000300: 1.044404e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599078930536011e-5
allele num: 62536
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

FS
type: SiteQuality
SIO_000300: 1.1057e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: -6.151e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.14e-1

DP
type: SiteQuality
SIO_000300: 1.237995e6

MQ
type: SiteQuality
SIO_000300: 2.517e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

QD
type: SiteQuality
SIO_000300: 2.55e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.19041723412158e-5
allele num: 16154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.237995e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 1.1057e1

MQ
type: SiteQuality
SIO_000300: 2.517e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.151e0

MQRankSum
type: SiteQuality
SIO_000300: -4.14e-1

QD
type: SiteQuality
SIO_000300: 2.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555935895441108e-5
allele num: 64270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.267639e6

MQRankSum
type: SiteQuality
SIO_000300: -1.101e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

QD
type: SiteQuality
SIO_000300: 1.086e1

FS
type: SiteQuality
SIO_000300: 4.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 2.662e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.111290874583865e-5
allele num: 64282
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.71e-1

MQ
type: SiteQuality
SIO_000300: 2.859e1

DP
type: SiteQuality
SIO_000300: 1.268107e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: -4.673e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1