16-3021687-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021687
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021687
    reference: chr 16
allele count: 1
allele frequency: 8.484786777308286e-6
allele num: 117858
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.338T>C
  hgvsp: ENSP00000459418.1:p.Val113Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+949A>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.359T>C
  hgvsp: ENSP00000458683.1:p.Val120Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.443T>C
  hgvsp: ENSP00000293978.8:p.Val148Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.359T>C
  hgvsp: ENSP00000460326.1:p.Val120Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.560T>C
  hgvsp: ENSP00000321804.8:p.Val187Ala
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val187Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

16-3021690-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021690
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021690
    reference: chr 16
allele count: 1
allele frequency: 8.475007203756124e-6
allele num: 117994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.446T>C
  hgvsp: ENSP00000293978.8:p.Phe149Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.362T>C
  hgvsp: ENSP00000458683.1:p.Phe121Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.563T>C
  hgvsp: ENSP00000321804.8:p.Phe188Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.362T>C
  hgvsp: ENSP00000460326.1:p.Phe121Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.341T>C
  hgvsp: ENSP00000459418.1:p.Phe114Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+946A>G
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe188Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

16-3021696-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021696
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021696
    reference: chr 16
allele count: 1
allele frequency: 8.470125866070369e-6
allele num: 118062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.368C>T
  hgvsp: ENSP00000458683.1:p.Ala123Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+940G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.474G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.368C>T
  hgvsp: ENSP00000460326.1:p.Ala123Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.569C>T
  hgvsp: ENSP00000321804.8:p.Ala190Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.347C>T
  hgvsp: ENSP00000459418.1:p.Ala116Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.452C>T
  hgvsp: ENSP00000293978.8:p.Ala151Val
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 28715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41104
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala190Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

16-3021697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021697
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021697
    reference: chr 16
allele count: 2
allele frequency: 1.693594824374217e-5
allele num: 118092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.369C>T
  hgvsp: ENST00000574988.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.453C>T
  hgvsp: ENST00000293978.8:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.348C>T
  hgvsp: ENST00000572687.1:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.570C>T
  hgvsp: ENST00000318782.8:c.570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.369C>T
  hgvsp: ENST00000576565.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.473G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+939G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41223
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala190Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

16-3021698-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021698
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021699
    reference: chr 16
allele count: 1
allele frequency: 8.466540232999188e-6
allele num: 118112
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.458dupG
  hgvsp: ENSP00000293978.8:p.Val154SerfsTer42
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.575dupG
  hgvsp: ENSP00000321804.8:p.Val193SerfsTer42
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.471dupC
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+937dupC
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.374dupG
  hgvsp: ENSP00000458683.1:p.Val126SerfsTer42
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.374dupG
  hgvsp: ENSP00000460326.1:p.Val126SerfsTer42
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.353dupG
  hgvsp: ENSP00000459418.1:p.Val119SerfsTer42
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8609
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val193SerfsTer42
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

16-3021699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021699
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021699
    reference: chr 16
allele count: 1
allele frequency: 8.454085859695991e-6
allele num: 118286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+937C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.371G>A
  hgvsp: ENSP00000458683.1:p.Arg124Gln
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.371G>A
  hgvsp: ENSP00000460326.1:p.Arg124Gln
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.350G>A
  hgvsp: ENSP00000459418.1:p.Arg117Gln
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.471C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.455G>A
  hgvsp: ENSP00000293978.8:p.Arg152Gln
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.572G>A
  hgvsp: ENSP00000321804.8:p.Arg191Gln
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg191Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

16-3021702-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021702
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021702
    reference: chr 16
allele count: 1
allele frequency: 8.439103429651633e-6
allele num: 118496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.458G>T
  hgvsp: ENSP00000293978.8:p.Gly153Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.575G>T
  hgvsp: ENSP00000321804.8:p.Gly192Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.374G>T
  hgvsp: ENSP00000458683.1:p.Gly125Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.353G>T
  hgvsp: ENSP00000459418.1:p.Gly118Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.374G>T
  hgvsp: ENSP00000460326.1:p.Gly125Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+934C>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.468C>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8672
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41779
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly192Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

16-3021707-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021707
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021707
    reference: chr 16
allele count: 1
allele frequency: 8.42715566641947e-6
allele num: 118664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.463G>T
  hgvsp: ENSP00000293978.8:p.Gly155Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+929C>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.379G>T
  hgvsp: ENSP00000458683.1:p.Gly127Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.580G>T
  hgvsp: ENSP00000321804.8:p.Gly194Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.379G>T
  hgvsp: ENSP00000460326.1:p.Gly127Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.463C>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.358G>T
  hgvsp: ENSP00000459418.1:p.Gly120Cys
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly194Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

16-3021708-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021708
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021708
    reference: chr 16
allele count: 1
allele frequency: 8.424741781664392e-6
allele num: 118698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.462C>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+928C>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.380G>C
  hgvsp: ENSP00000458683.1:p.Gly127Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.359G>C
  hgvsp: ENSP00000459418.1:p.Gly120Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.464G>C
  hgvsp: ENSP00000293978.8:p.Gly155Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.380G>C
  hgvsp: ENSP00000460326.1:p.Gly127Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.581G>C
  hgvsp: ENSP00000321804.8:p.Gly194Ala
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly194Ala
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-3021712-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021712
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021712
    reference: chr 16
allele count: 1
allele frequency: 8.418358756776778e-6
allele num: 118788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.384G>A
  hgvsp: ENST00000576565.1:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+924C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.585G>A
  hgvsp: ENST00000318782.8:c.585G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.363G>A
  hgvsp: ENST00000572687.1:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.384G>A
  hgvsp: ENST00000574988.1:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.458C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.468G>A
  hgvsp: ENST00000293978.8:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu195Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

16-3021712-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021712
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021712
    reference: chr 16
allele count: 1851
allele frequency: 1.558238205879382e-2
allele num: 118788
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.585G>C
  hgvsp: ENST00000318782.8:c.585G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.384G>C
  hgvsp: ENST00000574988.1:c.384G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.458C>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.468G>C
  hgvsp: ENST00000293978.8:c.468G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.384G>C
  hgvsp: ENST00000576565.1:c.384G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.363G>C
  hgvsp: ENST00000572687.1:c.363G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+924C>G
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 13548
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 11423
  bin: 3.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 29011
  bin: 2.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8619
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu195Leu
num of homozygotes: 23
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-3021714-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021714
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021714
    reference: chr 16
allele count: 3
allele frequency: 2.524317592810744e-5
allele num: 118844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.470G>T
  hgvsp: ENSP00000293978.8:p.Gly157Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.386G>T
  hgvsp: ENSP00000458683.1:p.Gly129Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+922C>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.386G>T
  hgvsp: ENSP00000460326.1:p.Gly129Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.456C>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.587G>T
  hgvsp: ENSP00000321804.8:p.Gly196Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.365G>T
  hgvsp: ENSP00000459418.1:p.Gly122Val
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11732
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly196Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

16-3021717-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021717
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021717
    reference: chr 16
allele count: 1
allele frequency: 8.41283462049703e-6
allele num: 118866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.453G>C
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+919G>C
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.368C>G
  hgvsp: ENSP00000459418.1:p.Ser123Ter
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.389C>G
  hgvsp: ENSP00000458683.1:p.Ser130Ter
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.389C>G
  hgvsp: ENSP00000460326.1:p.Ser130Ter
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.590C>G
  hgvsp: ENSP00000321804.8:p.Ser197Ter
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.473C>G
  hgvsp: ENSP00000293978.8:p.Ser158Ter
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser197Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-3021732-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021732
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021732
    reference: chr 16
allele count: 1
allele frequency: 8.394191219675984e-6
allele num: 119130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.383C>A
  hgvsp: ENSP00000459418.1:p.Ser128Tyr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+904G>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.605C>A
  hgvsp: ENSP00000321804.8:p.Ser202Tyr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.404C>A
  hgvsp: ENSP00000460326.1:p.Ser135Tyr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.404C>A
  hgvsp: ENSP00000458683.1:p.Ser135Tyr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.488C>A
  hgvsp: ENSP00000293978.8:p.Ser163Tyr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.438G>T
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser202Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

16-3021733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021733
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021733
    reference: chr 16
allele count: 1
allele frequency: 8.392923087252828e-6
allele num: 119148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+903G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.405C>T
  hgvsp: ENST00000576565.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.489C>T
  hgvsp: ENST00000293978.8:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.606C>T
  hgvsp: ENST00000318782.8:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.437G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.384C>T
  hgvsp: ENST00000572687.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.405C>T
  hgvsp: ENST00000574988.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43758
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser202Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

16-3021736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021736
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021736
    reference: chr 16
allele count: 2
allele frequency: 1.678105754224631e-5
allele num: 119182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.408G>A
  hgvsp: ENST00000576565.1:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.408G>A
  hgvsp: ENST00000574988.1:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.609G>A
  hgvsp: ENST00000318782.8:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.434C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+900C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.387G>A
  hgvsp: ENST00000572687.1:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.492G>A
  hgvsp: ENST00000293978.8:c.492G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14108
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu203Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-3021737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021737
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021737
    reference: chr 16
allele count: 1
allele frequency: 8.390528771123156e-6
allele num: 119182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.409C>T
  hgvsp: ENSP00000458683.1:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.493C>T
  hgvsp: ENSP00000293978.8:p.Pro165Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.433G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.610C>T
  hgvsp: ENSP00000321804.8:p.Pro204Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.388C>T
  hgvsp: ENSP00000459418.1:p.Pro130Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.409C>T
  hgvsp: ENSP00000460326.1:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+899G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro204Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

16-3021738-CCTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021738
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021735
    reference: chr 16
allele count: 2
allele frequency: 1.677796047112513e-5
allele num: 119204
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.614_616delGCT
  hgvsp: ENSP00000321804.8:p.Cys205del
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.497_499delGCT
  hgvsp: ENSP00000293978.8:p.Cys166del
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.392_394delGCT
  hgvsp: ENSP00000459418.1:p.Cys131del
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.413_415delGCT
  hgvsp: ENSP00000460326.1:p.Cys138del
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+895_1508+897delCAG
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.429_431delCAG
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.413_415delGCT
  hgvsp: ENSP00000458683.1:p.Cys138del
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys205del
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CCTG
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/16-3021742-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021742
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021742
    reference: chr 16
allele count: 1
allele frequency: 8.386166180269028e-6
allele num: 119244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.498C>A
  hgvsp: ENSP00000293978.8:p.Cys166Ter
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.414C>A
  hgvsp: ENSP00000458683.1:p.Cys138Ter
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.414C>A
  hgvsp: ENSP00000460326.1:p.Cys138Ter
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.615C>A
  hgvsp: ENSP00000321804.8:p.Cys205Ter
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.393C>A
  hgvsp: ENSP00000459418.1:p.Cys131Ter
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.428G>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+894G>T
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8960
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys205Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

16-3021746-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021746
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021746
    reference: chr 16
allele count: 2
allele frequency: 1.676839492923737e-5
allele num: 119272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+890G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.619C>T
  hgvsp: ENST00000318782.8:c.619C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.502C>T
  hgvsp: ENST00000293978.8:c.502C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.397C>T
  hgvsp: ENST00000572687.1:c.397C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.418C>T
  hgvsp: ENST00000574988.1:c.418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.418C>T
  hgvsp: ENST00000576565.1:c.418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.424G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8976
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu207Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

16-3021747-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021747
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021746
    reference: chr 16
allele count: 1
allele frequency: 8.381667616588997e-6
allele num: 119308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+888delC
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.621delG
  hgvsp: ENSP00000321804.8:p.Arg208AlafsTer12
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.399delG
  hgvsp: ENSP00000459418.1:p.Arg134AlafsTer12
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.422delC
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.420delG
  hgvsp: ENSP00000460326.1:p.Arg141AlafsTer12
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.504delG
  hgvsp: ENSP00000293978.8:p.Arg169AlafsTer12
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.420delG
  hgvsp: ENSP00000458683.1:p.Arg141AlafsTer12
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 14042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11824
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg208AlafsTer12
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: TG
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

16-3021747-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021747
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021747
    reference: chr 16
allele count: 1
allele frequency: 8.381667616588997e-6
allele num: 119308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.398T>C
  hgvsp: ENSP00000459418.1:p.Leu133Pro
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.419T>C
  hgvsp: ENSP00000458683.1:p.Leu140Pro
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.419T>C
  hgvsp: ENSP00000460326.1:p.Leu140Pro
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.423A>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.620T>C
  hgvsp: ENSP00000321804.8:p.Leu207Pro
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+889A>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.503T>C
  hgvsp: ENSP00000293978.8:p.Leu168Pro
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu207Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

16-3021749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021749
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021749
    reference: chr 16
allele count: 5
allele frequency: 4.191255364806867e-5
allele num: 119296
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.622C>T
  hgvsp: ENSP00000321804.8:p.Arg208Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.421C>T
  hgvsp: ENSP00000460326.1:p.Arg141Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.421G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.505C>T
  hgvsp: ENSP00000293978.8:p.Arg169Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.400C>T
  hgvsp: ENSP00000459418.1:p.Arg134Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.421C>T
  hgvsp: ENSP00000458683.1:p.Arg141Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+887G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg208Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD

16-3021751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021751
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021751
    reference: chr 16
allele count: 1
allele frequency: 8.380262805041566e-6
allele num: 119328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.423C>T
  hgvsp: ENST00000574988.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.402C>T
  hgvsp: ENST00000572687.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+885G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.507C>T
  hgvsp: ENST00000293978.8:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.624C>T
  hgvsp: ENST00000318782.8:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.423C>T
  hgvsp: ENST00000576565.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.419G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg208Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-3021757-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021757
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021757
    reference: chr 16
allele count: 12
allele frequency: 1.005564121472146e-4
allele num: 119336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.513C>T
  hgvsp: ENST00000293978.8:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.429C>T
  hgvsp: ENST00000576565.1:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.413G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.408C>T
  hgvsp: ENST00000572687.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.429C>T
  hgvsp: ENST00000574988.1:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.630C>T
  hgvsp: ENST00000318782.8:c.630C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+879G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp210Asp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-3021758-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021758
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021758
    reference: chr 16
allele count: 8
allele frequency: 6.702188264468349e-5
allele num: 119364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.430G>A
  hgvsp: ENSP00000460326.1:p.Ala144Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.514G>A
  hgvsp: ENSP00000293978.8:p.Ala172Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+878C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.631G>A
  hgvsp: ENSP00000321804.8:p.Ala211Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.430G>A
  hgvsp: ENSP00000458683.1:p.Ala144Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.412C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.409G>A
  hgvsp: ENSP00000459418.1:p.Ala137Thr
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11866
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala211Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

16-3021759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021759
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021759
    reference: chr 16
allele count: 1
allele frequency: 8.376612497905846e-6
allele num: 119380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.515C>T
  hgvsp: ENSP00000293978.8:p.Ala172Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.431C>T
  hgvsp: ENSP00000460326.1:p.Ala144Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+877G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.632C>T
  hgvsp: ENSP00000321804.8:p.Ala211Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.410C>T
  hgvsp: ENSP00000459418.1:p.Ala137Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.431C>T
  hgvsp: ENSP00000458683.1:p.Ala144Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.411G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala211Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

16-3021761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021761
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021761
    reference: chr 16
allele count: 1
allele frequency: 8.376612497905846e-6
allele num: 119380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+875G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.634C>T
  hgvsp: ENST00000318782.8:c.634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.517C>T
  hgvsp: ENST00000293978.8:c.517C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.412C>T
  hgvsp: ENST00000572687.1:c.412C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.409G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.433C>T
  hgvsp: ENST00000576565.1:c.433C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.433C>T
  hgvsp: ENST00000574988.1:c.433C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9013
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu212Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

16-3021764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021764
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021764
    reference: chr 16
allele count: 1
allele frequency: 8.375770570892522e-6
allele num: 119392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.415G>A
  hgvsp: ENSP00000459418.1:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.436G>A
  hgvsp: ENSP00000458683.1:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.520G>A
  hgvsp: ENSP00000293978.8:p.Ala174Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+872C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.436G>A
  hgvsp: ENSP00000460326.1:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.637G>A
  hgvsp: ENSP00000321804.8:p.Ala213Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.406C>T
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala213Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

16-3021766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021766
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021766
    reference: chr 16
allele count: 2
allele frequency: 1.675154114178504e-5
allele num: 119392
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.639G>A
  hgvsp: ENST00000318782.8:c.639G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.522G>A
  hgvsp: ENST00000293978.8:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.417G>A
  hgvsp: ENST00000572687.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.404C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.438G>A
  hgvsp: ENST00000574988.1:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.438G>A
  hgvsp: ENST00000576565.1:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+870C>T
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala213Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

16-3021767-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021767
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021767
    reference: chr 16
allele count: 1
allele frequency: 8.373806732540612e-6
allele num: 119420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.403G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.523C>T
  hgvsp: ENST00000293978.8:c.523C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.439C>T
  hgvsp: ENST00000574988.1:c.439C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+869G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.640C>T
  hgvsp: ENST00000318782.8:c.640C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.439C>T
  hgvsp: ENST00000576565.1:c.439C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.418C>T
  hgvsp: ENST00000572687.1:c.418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9017
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu214Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-3021771-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021771
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021771
    reference: chr 16
allele count: 1
allele frequency: 8.37436773523599e-6
allele num: 119412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.422T>C
  hgvsp: ENSP00000459418.1:p.Leu141Pro
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+865A>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.443T>C
  hgvsp: ENSP00000458683.1:p.Leu148Pro
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.527T>C
  hgvsp: ENSP00000293978.8:p.Leu176Pro
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.399A>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.644T>C
  hgvsp: ENSP00000321804.8:p.Leu215Pro
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.443T>C
  hgvsp: ENSP00000460326.1:p.Leu148Pro
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu215Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

16-3021775-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021775
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021775
    reference: chr 16
allele count: 1
allele frequency: 8.373105584861425e-6
allele num: 119430
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.648G>A
  hgvsp: ENST00000318782.8:c.648G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.426G>A
  hgvsp: ENST00000572687.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.395C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.447G>A
  hgvsp: ENST00000576565.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+861C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.447G>A
  hgvsp: ENST00000574988.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.531G>A
  hgvsp: ENST00000293978.8:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly216Gly
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

16-3021775-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021775
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021775
    reference: chr 16
allele count: 3
allele frequency: 2.511931675458427e-5
allele num: 119430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+861C>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.447G>T
  hgvsp: ENST00000576565.1:c.447G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.426G>T
  hgvsp: ENST00000572687.1:c.426G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.531G>T
  hgvsp: ENST00000293978.8:c.531G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.395C>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.648G>T
  hgvsp: ENST00000318782.8:c.648G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.447G>T
  hgvsp: ENST00000574988.1:c.447G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30682
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly216Gly
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

16-3021782-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021782
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021782
    reference: chr 16
allele count: 1
allele frequency: 8.375349670848758e-6
allele num: 119398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+854C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.454G>A
  hgvsp: ENSP00000458683.1:p.Val152Ile
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.538G>A
  hgvsp: ENSP00000293978.8:p.Val180Ile
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.433G>A
  hgvsp: ENSP00000459418.1:p.Val145Ile
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.454G>A
  hgvsp: ENSP00000460326.1:p.Val152Ile
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.388C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.655G>A
  hgvsp: ENSP00000321804.8:p.Val219Ile
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44481
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val219Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/16-3021785-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021785
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021785
    reference: chr 16
allele count: 2
allele frequency: 1.675182176061647e-5
allele num: 119390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+851T>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.385T>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.541A>C
  hgvsp: ENSP00000293978.8:p.Asn181His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.658A>C
  hgvsp: ENSP00000321804.8:p.Asn220His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.436A>C
  hgvsp: ENSP00000459418.1:p.Asn146His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.457A>C
  hgvsp: ENSP00000460326.1:p.Asn153His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.457A>C
  hgvsp: ENSP00000458683.1:p.Asn153His
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn220His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

16-3021787-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021787
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021787
    reference: chr 16
allele count: 1
allele frequency: 8.377033524888167e-6
allele num: 119374
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.660T>C
  hgvsp: ENST00000318782.8:c.660T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.438T>C
  hgvsp: ENST00000572687.1:c.438T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.543T>C
  hgvsp: ENST00000293978.8:c.543T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.383A>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.459T>C
  hgvsp: ENST00000576565.1:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.459T>C
  hgvsp: ENST00000574988.1:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+849A>G
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44397
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn220Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

16-3021789-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021789
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021789
    reference: chr 16
allele count: 1
allele frequency: 8.379420144126027e-6
allele num: 119340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+847A>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.545T>C
  hgvsp: ENSP00000293978.8:p.Val182Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.461T>C
  hgvsp: ENSP00000460326.1:p.Val154Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.440T>C
  hgvsp: ENSP00000459418.1:p.Val147Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.461T>C
  hgvsp: ENSP00000458683.1:p.Val154Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.662T>C
  hgvsp: ENSP00000321804.8:p.Val221Ala
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.381A>G
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8992
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val221Ala
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

16-3021790-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021790
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021790
    reference: chr 16
allele count: 1
allele frequency: 8.378718056137411e-6
allele num: 119350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.380T>C
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+846T>C
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.462A>G
  hgvsp: ENST00000574988.1:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.441A>G
  hgvsp: ENST00000572687.1:c.441A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.663A>G
  hgvsp: ENST00000318782.8:c.663A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.462A>G
  hgvsp: ENST00000576565.1:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.546A>G
  hgvsp: ENST00000293978.8:c.546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val221Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

16-3021794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021794
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021794
    reference: chr 16
allele count: 32
allele frequency: 2.682313495389774e-4
allele num: 119300
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.667C>T
  hgvsp: ENSP00000321804.8:p.Arg223Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.376G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.466C>T
  hgvsp: ENSP00000460326.1:p.Arg156Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+842G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.466C>T
  hgvsp: ENSP00000458683.1:p.Arg156Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.550C>T
  hgvsp: ENSP00000293978.8:p.Arg184Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.445C>T
  hgvsp: ENSP00000459418.1:p.Arg149Cys
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg223Cys
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

16-3021795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021795
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021795
    reference: chr 16
allele count: 14
allele frequency: 1.173590852697582e-4
allele num: 119292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.375C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.467G>A
  hgvsp: ENSP00000460326.1:p.Arg156His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.467G>A
  hgvsp: ENSP00000458683.1:p.Arg156His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.551G>A
  hgvsp: ENSP00000293978.8:p.Arg184His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.446G>A
  hgvsp: ENSP00000459418.1:p.Arg149His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.668G>A
  hgvsp: ENSP00000321804.8:p.Arg223His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+841C>T
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11863
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44221
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 9.75e1
  variant carriers: 13
hgvs: p.Arg223His
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

16-3021802-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021802
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021802
    reference: chr 16
allele count: 2
allele frequency: 1.677373903416811e-5
allele num: 119234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.558C>T
  hgvsp: ENST00000293978.8:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.453C>T
  hgvsp: ENST00000572687.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.474C>T
  hgvsp: ENST00000574988.1:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+834G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.474C>T
  hgvsp: ENST00000576565.1:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.368G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.675C>T
  hgvsp: ENST00000318782.8:c.675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro225Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

16-3021803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021803
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021803
    reference: chr 16
allele count: 1
allele frequency: 8.387572971884856e-6
allele num: 119224
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.676G>A
  hgvsp: ENSP00000321804.8:p.Glu226Lys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.475G>A
  hgvsp: ENSP00000460326.1:p.Glu159Lys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.454G>A
  hgvsp: ENSP00000459418.1:p.Glu152Lys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+833C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.475G>A
  hgvsp: ENSP00000458683.1:p.Glu159Lys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.559G>A
  hgvsp: ENSP00000293978.8:p.Glu187Lys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.367C>T
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu226Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

16-3021803-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021803
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021803
    reference: chr 16
allele count: 1
allele frequency: 8.387572971884856e-6
allele num: 119224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.475G>C
  hgvsp: ENSP00000460326.1:p.Glu159Gln
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.475G>C
  hgvsp: ENSP00000458683.1:p.Glu159Gln
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+833C>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.676G>C
  hgvsp: ENSP00000321804.8:p.Glu226Gln
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.454G>C
  hgvsp: ENSP00000459418.1:p.Glu152Gln
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.367C>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.559G>C
  hgvsp: ENSP00000293978.8:p.Glu187Gln
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu226Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

16-3021804-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021804
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021804
    reference: chr 16
allele count: 1
allele frequency: 8.387291575804341e-6
allele num: 119228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.455A>G
  hgvsp: ENSP00000459418.1:p.Glu152Gly
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.366T>C
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.476A>G
  hgvsp: ENSP00000460326.1:p.Glu159Gly
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+832T>C
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.677A>G
  hgvsp: ENSP00000321804.8:p.Glu226Gly
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.560A>G
  hgvsp: ENSP00000293978.8:p.Glu187Gly
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.476A>G
  hgvsp: ENSP00000458683.1:p.Glu159Gly
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu226Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

16-3021805-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021805
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021805
    reference: chr 16
allele count: 1
allele frequency: 8.387150884844418e-6
allele num: 119230
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.678G>A
  hgvsp: ENST00000318782.8:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.561G>A
  hgvsp: ENST00000293978.8:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.365C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.477G>A
  hgvsp: ENST00000576565.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.456G>A
  hgvsp: ENST00000572687.1:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.477G>A
  hgvsp: ENST00000574988.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+831C>T
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44270
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu226Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP

16-3021806-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021806
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021806
    reference: chr 16
allele count: 18
allele frequency: 1.51039656300871e-4
allele num: 119174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.562C>T
  hgvsp: ENSP00000293978.8:p.Arg188Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+830G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.457C>T
  hgvsp: ENSP00000459418.1:p.Arg153Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.679C>T
  hgvsp: ENSP00000321804.8:p.Arg227Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.478C>T
  hgvsp: ENSP00000458683.1:p.Arg160Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.364G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.478C>T
  hgvsp: ENSP00000460326.1:p.Arg160Cys
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13918
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11814
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30600
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44131
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg227Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

16-3021807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021807
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021807
    reference: chr 16
allele count: 3
allele frequency: 2.517454350161117e-5
allele num: 119168
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.680G>A
  hgvsp: ENSP00000321804.8:p.Arg227His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.479G>A
  hgvsp: ENSP00000458683.1:p.Arg160His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.363C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+829C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.563G>A
  hgvsp: ENSP00000293978.8:p.Arg188His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.479G>A
  hgvsp: ENSP00000460326.1:p.Arg160His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.458G>A
  hgvsp: ENSP00000459418.1:p.Arg153His
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44223
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg227His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-3021810-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021810
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021810
    reference: chr 16
allele count: 1
allele frequency: 8.394473078924836e-6
allele num: 119126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.482G>C
  hgvsp: ENSP00000458683.1:p.Trp161Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.566G>C
  hgvsp: ENSP00000293978.8:p.Trp189Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.482G>C
  hgvsp: ENSP00000460326.1:p.Trp161Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.683G>C
  hgvsp: ENSP00000321804.8:p.Trp228Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.461G>C
  hgvsp: ENSP00000459418.1:p.Trp154Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+826C>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.360C>G
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11782
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp228Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ

16-3021811-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021811
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021811
    reference: chr 16
allele count: 1
allele frequency: 8.394754957102802e-6
allele num: 119122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.359C>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.483G>C
  hgvsp: ENSP00000458683.1:p.Trp161Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.567G>C
  hgvsp: ENSP00000293978.8:p.Trp189Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.483G>C
  hgvsp: ENSP00000460326.1:p.Trp161Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+825C>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.684G>C
  hgvsp: ENSP00000321804.8:p.Trp228Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.462G>C
  hgvsp: ENSP00000459418.1:p.Trp154Cys
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Trp228Cys
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

16-3021813-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021813
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021813
    reference: chr 16
allele count: 5
allele frequency: 4.199281083078577e-5
allele num: 119068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.485G>T
  hgvsp: ENSP00000458683.1:p.Gly162Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.357C>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.686G>T
  hgvsp: ENSP00000321804.8:p.Gly229Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+823C>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.569G>T
  hgvsp: ENSP00000293978.8:p.Gly190Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.485G>T
  hgvsp: ENSP00000460326.1:p.Gly162Val
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.464G>T
  hgvsp: ENSP00000459418.1:p.Gly155Val
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly229Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-3021815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021815
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021815
    reference: chr 16
allele count: 4
allele frequency: 3.359989248034406e-5
allele num: 119048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+821G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.487C>T
  hgvsp: ENSP00000460326.1:p.Pro163Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.355G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.466C>T
  hgvsp: ENSP00000459418.1:p.Pro156Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.688C>T
  hgvsp: ENSP00000321804.8:p.Pro230Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.487C>T
  hgvsp: ENSP00000458683.1:p.Pro163Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.571C>T
  hgvsp: ENSP00000293978.8:p.Pro191Ser
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro230Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

16-3021821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021821
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021821
    reference: chr 16
allele count: 6
allele frequency: 5.04472993879061e-5
allele num: 118936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+815G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.349G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.577C>T
  hgvsp: ENSP00000293978.8:p.Arg193Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.694C>T
  hgvsp: ENSP00000321804.8:p.Arg232Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.493C>T
  hgvsp: ENSP00000458683.1:p.Arg165Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.472C>T
  hgvsp: ENSP00000459418.1:p.Arg158Cys
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.493C>T
  hgvsp: ENSP00000460326.1:p.Arg165Cys
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg232Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

16-3021822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021822
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021822
    reference: chr 16
allele count: 10
allele frequency: 8.410853365182431e-5
allele num: 118894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.494G>A
  hgvsp: ENSP00000458683.1:p.Arg165His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.695G>A
  hgvsp: ENSP00000321804.8:p.Arg232His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+814C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.473G>A
  hgvsp: ENSP00000459418.1:p.Arg158His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.348C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.578G>A
  hgvsp: ENSP00000293978.8:p.Arg193His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.494G>A
  hgvsp: ENSP00000460326.1:p.Arg165His
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30540
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg232His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-3021840-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021840
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021840
    reference: chr 16
allele count: 19
allele frequency: 1.604106512672441e-4
allele num: 118446
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+796T>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.713A>C
  hgvsp: ENSP00000321804.8:p.Asn238Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.330T>G
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.596A>C
  hgvsp: ENSP00000293978.8:p.Asn199Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.512A>C
  hgvsp: ENSP00000458683.1:p.Asn171Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.491A>C
  hgvsp: ENSP00000459418.1:p.Asn164Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.512A>C
  hgvsp: ENSP00000460326.1:p.Asn171Thr
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn238Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

16-3021851-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021851
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021851
    reference: chr 16
allele count: 1
allele frequency: 8.464103736055389e-6
allele num: 118146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.523A>T
  hgvsp: ENSP00000458683.1:p.Ile175Phe
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.523A>T
  hgvsp: ENSP00000460326.1:p.Ile175Phe
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.607A>T
  hgvsp: ENSP00000293978.8:p.Ile203Phe
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.502A>T
  hgvsp: ENSP00000459418.1:p.Ile168Phe
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.319T>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.724A>T
  hgvsp: ENSP00000321804.8:p.Ile242Phe
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+785T>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43846
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile242Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/16-3021853-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021853
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021853
    reference: chr 16
allele count: 1
allele frequency: 8.472565831836514e-6
allele num: 118028
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.726C>A
  hgvsp: ENST00000318782.8:c.726C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+783G>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.317G>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.504C>A
  hgvsp: ENST00000572687.1:c.504C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.525C>A
  hgvsp: ENST00000574988.1:c.525C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.609C>A
  hgvsp: ENST00000293978.8:c.609C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.525C>A
  hgvsp: ENST00000576565.1:c.525C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30302
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile242Ile
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

16-3021853-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021853
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021853
    reference: chr 16
allele count: 1
allele frequency: 8.472565831836514e-6
allele num: 118028
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.726C>T
  hgvsp: ENST00000318782.8:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.525C>T
  hgvsp: ENST00000574988.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.317G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+783G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.525C>T
  hgvsp: ENST00000576565.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.609C>T
  hgvsp: ENST00000293978.8:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.504C>T
  hgvsp: ENST00000572687.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile242Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

16-3021855-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021855
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021855
    reference: chr 16
allele count: 1
allele frequency: 8.479462741240714e-6
allele num: 117932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.527T>G
  hgvsp: ENSP00000460326.1:p.Met176Arg
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.315A>C
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.527T>G
  hgvsp: ENSP00000458683.1:p.Met176Arg
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.611T>G
  hgvsp: ENSP00000293978.8:p.Met204Arg
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.728T>G
  hgvsp: ENSP00000321804.8:p.Met243Arg
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.506T>G
  hgvsp: ENSP00000459418.1:p.Met169Arg
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+781A>C
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30257
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met243Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

16-3021859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021859
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021859
    reference: chr 16
allele count: 1
allele frequency: 8.494733265375467e-6
allele num: 117720
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.732C>T
  hgvsp: ENST00000318782.8:c.732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.531C>T
  hgvsp: ENST00000574988.1:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+777G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.311G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.615C>T
  hgvsp: ENST00000293978.8:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.510C>T
  hgvsp: ENST00000572687.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.531C>T
  hgvsp: ENST00000576565.1:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His244His
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

16-3021863-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021863
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021863
    reference: chr 16
allele count: 1
allele frequency: 8.510203734277399e-6
allele num: 117506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.307G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.535C>T
  hgvsp: ENST00000574988.1:c.535C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.736C>T
  hgvsp: ENST00000318782.8:c.736C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.535C>T
  hgvsp: ENST00000576565.1:c.535C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.514C>T
  hgvsp: ENST00000572687.1:c.514C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+773G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.619C>T
  hgvsp: ENST00000293978.8:c.619C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu246Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

16-3021868-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021868
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021868
    reference: chr 16
allele count: 7
allele frequency: 5.96862210095498e-5
allele num: 117280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.302G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.540C>T
  hgvsp: ENST00000576565.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.624C>T
  hgvsp: ENST00000293978.8:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+768G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.741C>T
  hgvsp: ENST00000318782.8:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.519C>T
  hgvsp: ENST00000572687.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.540C>T
  hgvsp: ENST00000574988.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13122
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser247Ser
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-3021869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021869
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021869
    reference: chr 16
allele count: 5
allele frequency: 4.266211604095563e-5
allele num: 117200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.301C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.625G>A
  hgvsp: ENSP00000293978.8:p.Val209Met
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.520G>A
  hgvsp: ENSP00000459418.1:p.Val174Met
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.541G>A
  hgvsp: ENSP00000460326.1:p.Val181Met
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.742G>A
  hgvsp: ENSP00000321804.8:p.Val248Met
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+767C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.541G>A
  hgvsp: ENSP00000458683.1:p.Val181Met
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val248Met
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

16-3021874-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021874
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021874
    reference: chr 16
allele count: 1
allele frequency: 8.559298822240482e-6
allele num: 116832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.525C>T
  hgvsp: ENST00000572687.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.747C>T
  hgvsp: ENST00000318782.8:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.546C>T
  hgvsp: ENST00000574988.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.630C>T
  hgvsp: ENST00000293978.8:c.630C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.296G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.546C>T
  hgvsp: ENST00000576565.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+762G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly249Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

16-3021881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021881
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021881
    reference: chr 16
allele count: 1
allele frequency: 8.61341280642216e-6
allele num: 116098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.553C>T
  hgvsp: ENST00000574988.1:c.553C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.532C>T
  hgvsp: ENST00000572687.1:c.532C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.553C>T
  hgvsp: ENST00000576565.1:c.553C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+755G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.637C>T
  hgvsp: ENST00000293978.8:c.637C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.754C>T
  hgvsp: ENST00000318782.8:c.754C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.289G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8520
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu252Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

16-3021885-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021885
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021885
    reference: chr 16
allele count: 2
allele frequency: 1.731002250302925e-5
allele num: 115540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.285T>C
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.758A>G
  hgvsp: ENSP00000321804.8:p.Gln253Arg
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.557A>G
  hgvsp: ENSP00000460326.1:p.Gln186Arg
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.536A>G
  hgvsp: ENSP00000459418.1:p.Gln179Arg
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.557A>G
  hgvsp: ENSP00000458683.1:p.Gln186Arg
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+751T>C
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.641A>G
  hgvsp: ENSP00000293978.8:p.Gln214Arg
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln253Arg
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

16-3021886-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021886
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021886
    reference: chr 16
allele count: 7
allele frequency: 6.082830775647821e-5
allele num: 115078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.642G>T
  hgvsp: ENSP00000293978.8:p.Gln214His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.537G>T
  hgvsp: ENSP00000459418.1:p.Gln179His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.759G>T
  hgvsp: ENSP00000321804.8:p.Gln253His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.558G>T
  hgvsp: ENSP00000458683.1:p.Gln186His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.558G>T
  hgvsp: ENSP00000460326.1:p.Gln186His
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.284C>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+750C>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln253His
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

16-3021892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021892
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021892
    reference: chr 16
allele count: 3
allele frequency: 2.636991719846e-5
allele num: 113766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+744G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.564C>T
  hgvsp: ENST00000576565.1:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.648C>T
  hgvsp: ENST00000293978.8:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.543C>T
  hgvsp: ENST00000572687.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.765C>T
  hgvsp: ENST00000318782.8:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.564C>T
  hgvsp: ENST00000574988.1:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.278G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39308
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His255His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

16-3021893-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021893
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021893
    reference: chr 16
allele count: 4
allele frequency: 3.517040059086273e-5
allele num: 113732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.565G>A
  hgvsp: ENSP00000460326.1:p.Ala189Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+743C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.544G>A
  hgvsp: ENSP00000459418.1:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.766G>A
  hgvsp: ENSP00000321804.8:p.Ala256Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.649G>A
  hgvsp: ENSP00000293978.8:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.565G>A
  hgvsp: ENSP00000458683.1:p.Ala189Thr
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.277C>T
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11052
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala256Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

16-3021895-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021895
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021895
    reference: chr 16
allele count: 3
allele frequency: 2.649661726519581e-5
allele num: 113222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.546C>T
  hgvsp: ENST00000572687.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.567C>T
  hgvsp: ENST00000574988.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.567C>T
  hgvsp: ENST00000576565.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.768C>T
  hgvsp: ENST00000318782.8:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.651C>T
  hgvsp: ENST00000293978.8:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.275G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+741G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala256Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD

16-3021896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021896
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021896
    reference: chr 16
allele count: 4
allele frequency: 3.534755483289444e-5
allele num: 113162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.568G>A
  hgvsp: ENSP00000458683.1:p.Gly190Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.652G>A
  hgvsp: ENSP00000293978.8:p.Gly218Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.547G>A
  hgvsp: ENSP00000459418.1:p.Gly183Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+740C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.274C>T
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.769G>A
  hgvsp: ENSP00000321804.8:p.Gly257Ser
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.568G>A
  hgvsp: ENSP00000460326.1:p.Gly190Ser
  variant of: http://identifiers.org/hgnc/26386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28118
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly257Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

16-3021901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3021901
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 3021901
    reference: chr 16
allele count: 6
allele frequency: 5.352363960749331e-5
allele num: 112100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000458683
  ensembl transcript: ENST00000574988
  gene symbol: PAQR4
  hgvsc: ENST00000574988.1:c.573C>T
  hgvsp: ENST00000574988.1:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000127564
  ensembl transcript: ENST00000574333
  gene symbol: PKMYT1
  hgvsc: ENST00000574333.1:n.269G>A
  variant of: http://identifiers.org/hgnc/29650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000321804
  ensembl transcript: ENST00000318782
  gene symbol: PAQR4
  hgvsc: ENST00000318782.8:c.774C>T
  hgvsp: ENST00000318782.8:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000459418
  ensembl transcript: ENST00000572687
  gene symbol: PAQR4
  hgvsc: ENST00000572687.1:c.552C>T
  hgvsp: ENST00000572687.1:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000293978
  ensembl transcript: ENST00000293978
  gene symbol: PAQR4
  hgvsc: ENST00000293978.8:c.657C>T
  hgvsp: ENST00000293978.8:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162073
  ensembl protein: ENSP00000460326
  ensembl transcript: ENST00000576565
  gene symbol: PAQR4
  hgvsc: ENST00000576565.1:c.573C>T
  hgvsp: ENST00000576565.1:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127564
  ensembl protein: ENSP00000392855
  ensembl transcript: ENST00000431515
  gene symbol: PKMYT1
  hgvsc: ENST00000431515.2:c.1508+735G>A
  variant of: http://identifiers.org/hgnc/29650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11137
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val258Val
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8623
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.083465141744738e-5
allele num: 16438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.662834e6

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 1.19e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

GenotypeQuality
all individuals: 8635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 359
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171234481143125e-4
allele num: 8538
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.728e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 9.57e0

MQRankSum
type: SiteQuality
SIO_000300: -6.95e-1

DP
type: SiteQuality
SIO_000300: 1.663299e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
all individuals: 1807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.288e0

VQSLOD
type: SiteQuality
SIO_000300: -2.698e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.009e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

DP
type: SiteQuality
SIO_000300: 1.664479e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.323e1

GenotypeQuality
all individuals: 1918
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1813
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8614
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.532801961986511e-4
allele num: 6524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.03476821192053e-4
allele num: 9664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.53e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.132e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.664418e6

VQSLOD
type: SiteQuality
SIO_000300: -9.130000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

FS
type: SiteQuality
SIO_000300: 3.629e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.29e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

GenotypeQuality
all individuals: 1803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41257
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.089392278650591e-5
allele num: 16422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

MQ
type: SiteQuality
SIO_000300: 6.099e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.654e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.95e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

MQRankSum
type: SiteQuality
SIO_000300: -3.62e-1

DP
type: SiteQuality
SIO_000300: 1.665391e6

GenotypeQuality
all individuals: 369
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8645
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 180
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.334e0

QD
type: SiteQuality
SIO_000300: 1.395e1

MQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

FS
type: SiteQuality
SIO_000300: 2.415e0

VQSLOD
type: SiteQuality
SIO_000300: 7.84e-1

DP
type: SiteQuality
SIO_000300: 1.667258e6

GenotypeQuality
all individuals: 328
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.693e0

DP
type: SiteQuality
SIO_000300: 1.668597e6

VQSLOD
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.027e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 1.061e0

QD
type: SiteQuality
SIO_000300: 9.74e0

GenotypeQuality
all individuals: 168
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011326860841424e-4
allele num: 9888
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.48e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.648e0

FS
type: SiteQuality
SIO_000300: 8.129999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.670726e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.023e0

VQSLOD
type: SiteQuality
SIO_000300: -2.254e-1

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8676
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.010509296685529e-4
allele num: 9896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.623e1

DP
type: SiteQuality
SIO_000300: 1.671036e6

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

FS
type: SiteQuality
SIO_000300: 3.226e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

GenotypeQuality
all individuals: 279
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8619
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41808
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539266693347289e-5
allele num: 64966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.779e0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 1.680666e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 41808
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 758
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2354
bin: 9.75e1
variant carriers: 1820

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1889
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 4

Latino
type: Population
allele count: 94
allele frequency: 8.175334840841885e-3
allele num: 11498
num of homozygotes: 1

South Asian
type: Population
allele count: 59
allele frequency: 3.589681187636895e-3
allele num: 16436
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 136
allele frequency: 2.082695252679939e-2
allele num: 6530
num of homozygotes: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 47
allele frequency: 4.743641501816714e-3
allele num: 9908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1497
allele frequency: 2.304282239940892e-2
allele num: 64966
num of homozygotes: 17

Other
type: Population
allele count: 18
allele frequency: 2.059496567505721e-2
allele num: 874
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

FS
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

DP
type: SiteQuality
SIO_000300: 1.680666e6

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

QD
type: SiteQuality
SIO_000300: 1.333e1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.779e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

GenotypeQuality
all individuals: 1819
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.616378912381128e-5
allele num: 64986
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

DP
type: SiteQuality
SIO_000300: 1.62058e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.189e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

FS
type: SiteQuality
SIO_000300: 4.558e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.918e0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.003210272873194e-4
allele num: 9968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.405e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

DP
type: SiteQuality
SIO_000300: 1.620809e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

GenotypeQuality
all individuals: 8964
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535956747457992e-5
allele num: 65106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.091e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.646e0

MQ
type: SiteQuality
SIO_000300: 5.857e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e0

DP
type: SiteQuality
SIO_000300: 1.625516e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.488e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8972
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535579374097847e-5
allele num: 65122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.578e0

QD
type: SiteQuality
SIO_000300: 2.688e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.256e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.164e0

DP
type: SiteQuality
SIO_000300: 1.62599e6

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.215953307392996e-4
allele num: 16448
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

FS
type: SiteQuality
SIO_000300: 3.849e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.603e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.626602e6

QD
type: SiteQuality
SIO_000300: 1.239e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8960
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1811
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

QD
type: SiteQuality
SIO_000300: 1.475e1

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.006e0

FS
type: SiteQuality
SIO_000300: 2.71e0

DP
type: SiteQuality
SIO_000300: 1.627093e6

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43674
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.326663564448581e-4
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.39e-1

MQ
type: SiteQuality
SIO_000300: 5.787e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.86e-1

FS
type: SiteQuality
SIO_000300: 1.891e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.627224e6

MQRankSum
type: SiteQuality
SIO_000300: -9.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.536e1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 941
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.529987760097919e-4
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65166
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.69e0

VQSLOD
type: SiteQuality
SIO_000300: -4.826e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.002e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.426e0

FS
type: SiteQuality
SIO_000300: 4.517e0

DP
type: SiteQuality
SIO_000300: 1.628685e6

QD
type: SiteQuality
SIO_000300: 1.188e1

GenotypeQuality
all individuals: 779
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44008
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.068520052778545e-5
allele num: 65178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 8.183e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

QD
type: SiteQuality
SIO_000300: 1.476e1

DP
type: SiteQuality
SIO_000300: 1.629797e6

GenotypeQuality
all individuals: 525
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44044
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65194
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0517e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

DP
type: SiteQuality
SIO_000300: 1.629946e6

MQ
type: SiteQuality
SIO_000300: 5.838e1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.428e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

GenotypeQuality
all individuals: 525
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.65e-1

DP
type: SiteQuality
SIO_000300: 1.629946e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 1.0517e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.838e1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

QD
type: SiteQuality
SIO_000300: 1.428e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

GenotypeQuality
all individuals: 774
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 8963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43890
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.885330170027679e-5
allele num: 10116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.136286932776976e-5
allele num: 65186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.630508e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

FS
type: SiteQuality
SIO_000300: 2.76e0

QD
type: SiteQuality
SIO_000300: 1.153e1

GenotypeQuality
all individuals: 910
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8985
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
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variant carriers: 1

GenotypeQuality
all individuals: 775
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variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 224
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variant carriers: 0

GenotypeQuality
all individuals: 44102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.881422924901186e-5
allele num: 10120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 6.178e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.322e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

DP
type: SiteQuality
SIO_000300: 1.630849e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.952e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: 7.099999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.533789380042333e-4
allele num: 65198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214329083181542e-4
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.24e1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

DP
type: SiteQuality
SIO_000300: 1.631788e6

FS
type: SiteQuality
SIO_000300: 1.744e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

GenotypeQuality
all individuals: 145
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 8994
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.07352084164034e-4
allele num: 65206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

FS
type: SiteQuality
SIO_000300: 1.095e0

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

DP
type: SiteQuality
SIO_000300: 1.631711e6

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
all individuals: 145
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
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GenotypeQuality
all individuals: 9006
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44280
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65220
num of homozygotes: 0

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.188e0

DP
type: SiteQuality
SIO_000300: 1.631349e6

VQSLOD
type: SiteQuality
SIO_000300: 9.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65216
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.797e0

QD
type: SiteQuality
SIO_000300: 1.17e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

FS
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

DP
type: SiteQuality
SIO_000300: 1.631587e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533083951677194e-5
allele num: 65228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

FS
type: SiteQuality
SIO_000300: 4.569e0

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.169e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.631455e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.848335631278314e-5
allele num: 10154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65230
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 2.823e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.218e1

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

DP
type: SiteQuality
SIO_000300: 1.631913e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532661006038684e-5
allele num: 65246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.365e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.631967e6

QD
type: SiteQuality
SIO_000300: 1.695e1

MQ
type: SiteQuality
SIO_000300: 5.92e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.748e0

GenotypeQuality
all individuals: 9012
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 1793
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.632063e6

FS
type: SiteQuality
SIO_000300: 3.577e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.579e1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9004
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.93e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.678e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

DP
type: SiteQuality
SIO_000300: 1.632142e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.327205026762858e-4
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65252
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

FS
type: SiteQuality
SIO_000300: 2.678e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.632142e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533036946190403e-5
allele num: 65230
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6526
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
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VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.087e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.24e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.957e0

DP
type: SiteQuality
SIO_000300: 1.631585e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 491
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GenotypeQuality
all individuals: 90
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.327205026762858e-4
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

Other
type: Population
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.108e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.51e-1

DP
type: SiteQuality
SIO_000300: 1.631022e6

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.247e0

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 1940
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 8993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.630723e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.04e-1

QD
type: SiteQuality
SIO_000300: 1.032e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

GenotypeQuality
all individuals: 1939
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 488
bin: 9.75e1
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GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533648242439114e-5
allele num: 65204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.252e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.65e0

QD
type: SiteQuality
SIO_000300: 1.146e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.48e-1

FS
type: SiteQuality
SIO_000300: 7.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.91e-1

DP
type: SiteQuality
SIO_000300: 1.630304e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 222
bin: 9.25e1
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GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533413070813016e-5
allele num: 65214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.463e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.885e0

QD
type: SiteQuality
SIO_000300: 9.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.787e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.629982e6

GenotypeQuality
all individuals: 1936
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 762
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GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 4.142374961644676e-4
allele num: 65180
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.972386587771203e-4
allele num: 10140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.535155050660117e-4
allele num: 6514
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.88e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.629891e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 166
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1935
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variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.24345295829292e-4
allele num: 16496
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.863878477017163e-5
allele num: 10138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.671064743786438e-5
allele num: 65180
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.444e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

DP
type: SiteQuality
SIO_000300: 1.62839e6

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

QD
type: SiteQuality
SIO_000300: 1.378e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 951
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variant carriers: 0

GenotypeQuality
all individuals: 298
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GenotypeQuality
all individuals: 8958
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 447
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variant carriers: 2

GenotypeQuality
all individuals: 217
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variant carriers: 0

GenotypeQuality
all individuals: 1923
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.070592931495072e-5
allele num: 65134
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.378e0

VQSLOD
type: SiteQuality
SIO_000300: 8.38e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.626666e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.088e1

GenotypeQuality
all individuals: 8951
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 216
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GenotypeQuality
all individuals: 1924
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

DP
type: SiteQuality
SIO_000300: 1.625744e6

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 6.286e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.317e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 6.286e0

QD
type: SiteQuality
SIO_000300: 1.317e1

DP
type: SiteQuality
SIO_000300: 1.625744e6

GenotypeQuality
all individuals: 295
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variant carriers: 0

GenotypeQuality
all individuals: 756
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535390756947643e-5
allele num: 65130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.583e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-3

QD
type: SiteQuality
SIO_000300: 1.01e1

VQSLOD
type: SiteQuality
SIO_000300: -4.568e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.625514e6

MQ
type: SiteQuality
SIO_000300: 5.908e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 14
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 215
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GenotypeQuality
all individuals: 162
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GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 757
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GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.654e0

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.625506e6

GenotypeQuality
all individuals: 757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 7.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 9.75e1
variant carriers: 18

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.425418384671356e-4
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.284077439747135e-3
allele num: 10124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536239899222663e-5
allele num: 65094
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

FS
type: SiteQuality
SIO_000300: 2.452e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.226e1

DP
type: SiteQuality
SIO_000300: 1.625369e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

GenotypeQuality
all individuals: 987
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8945
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536381514257621e-5
allele num: 65088
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.204e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.507e1

MQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.74e-1

DP
type: SiteQuality
SIO_000300: 1.624819e6

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

GenotypeQuality
all individuals: 313
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8938
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.318e0

DP
type: SiteQuality
SIO_000300: 1.624009e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-2

QD
type: SiteQuality
SIO_000300: 2.042e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e0

FS
type: SiteQuality
SIO_000300: 2.473e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 754
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44231
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
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variant carriers: 1

GenotypeQuality
all individuals: 8938
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

FS
type: SiteQuality
SIO_000300: 4.625e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

DP
type: SiteQuality
SIO_000300: 1.623803e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

QD
type: SiteQuality
SIO_000300: 8.94e0

GenotypeQuality
all individuals: 1757
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44120
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.25e1
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GenotypeQuality
all individuals: 438
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8926
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213150551983501e-4
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.495688650664181e-4
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.944e0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

QD
type: SiteQuality
SIO_000300: 1.043e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.622947e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.85e-1

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.152899553914782e-5
allele num: 65010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.157e1

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.622443e6

VQSLOD
type: SiteQuality
SIO_000300: 9.47e-1

GenotypeQuality
all individuals: 44139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 8913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53997782431933e-5
allele num: 64936
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213592233009709e-4
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.498134328358209e-4
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

DP
type: SiteQuality
SIO_000300: 1.620847e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
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variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 179
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GenotypeQuality
all individuals: 1103
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 9.75e1
variant carriers: 10

East Asian
type: Population
allele count: 1
allele frequency: 1.166588894073728e-4
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.386150813208477e-4
allele num: 64928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.235e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.620461e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

GenotypeQuality
all individuals: 1717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 2.25e1
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GenotypeQuality
all individuals: 404
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 43895
bin: 6.25e1
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 209
bin: 9.25e1
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GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8821
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 1.659678546470999e-3
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

DP
type: SiteQuality
SIO_000300: 1.612638e6

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 1.111e0

QD
type: SiteQuality
SIO_000300: 1.334e1

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549955051303512e-5
allele num: 64518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.021e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.60672e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

MQ
type: SiteQuality
SIO_000300: 5.788e1

QD
type: SiteQuality
SIO_000300: 1.258e1

GenotypeQuality
all individuals: 8749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43610
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variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.103e0

DP
type: SiteQuality
SIO_000300: 1.60455e6

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

QD
type: SiteQuality
SIO_000300: 1.254e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-1

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551734839550618e-5
allele num: 64444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

QD
type: SiteQuality
SIO_000300: 1.254e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.103e0

DP
type: SiteQuality
SIO_000300: 1.60455e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43464
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variant carriers: 0

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 38
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552939714880269e-5
allele num: 64394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 1.562e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 1.602747e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.112e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.332e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

QD
type: SiteQuality
SIO_000300: 8.52e0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 43370
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variant carriers: 0

GenotypeQuality
all individuals: 1840
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variant carriers: 0

GenotypeQuality
all individuals: 8720
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variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555839064007219e-5
allele num: 64274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.448e0

MQ
type: SiteQuality
SIO_000300: 5.887e1

VQSLOD
type: SiteQuality
SIO_000300: -4.668e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.421e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

DP
type: SiteQuality
SIO_000300: 1.599512e6

QD
type: SiteQuality
SIO_000300: 1.077e1

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 43158
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variant carriers: 0

GenotypeQuality
all individuals: 726
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variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8672
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558457750210392e-5
allele num: 64166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.719e0

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

DP
type: SiteQuality
SIO_000300: 1.596001e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.293e1

GenotypeQuality
all individuals: 249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8661
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 142
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 369
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 42945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025851456709069e-4
allele num: 9748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.36885169107773e-5
allele num: 64042
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 6.201e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 1.592014e6

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

QD
type: SiteQuality
SIO_000300: 1.285e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 304
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variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.757469244288225e-4
allele num: 11380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.054653790836244e-4
allele num: 9734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.562841871659425e-5
allele num: 63986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.590812e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

FS
type: SiteQuality
SIO_000300: 1.805e0

QD
type: SiteQuality
SIO_000300: 1.229e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1786
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GenotypeQuality
all individuals: 1645
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567152483936687e-5
allele num: 63810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.612e0

FS
type: SiteQuality
SIO_000300: 6.138e0

QD
type: SiteQuality
SIO_000300: 1.37e1

VQSLOD
type: SiteQuality
SIO_000300: -1.106e0

DP
type: SiteQuality
SIO_000300: 1.58423e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.175e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

GenotypeQuality
all individuals: 651
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41966
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 91
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GenotypeQuality
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GenotypeQuality
all individuals: 132
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GenotypeQuality
all individuals: 346
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576292559899117e-5
allele num: 63440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.93e-1

DP
type: SiteQuality
SIO_000300: 1.572274e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

QD
type: SiteQuality
SIO_000300: 1.267e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.119e0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3613
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41517
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.166059838530948e-5
allele num: 63170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.366e1

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

DP
type: SiteQuality
SIO_000300: 1.56182e6

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

GenotypeQuality
all individuals: 426
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8307
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 693
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15948
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.651113467656416e-4
allele num: 11316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.767050149367571e-5
allele num: 62932
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.201923076923077e-3
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

DP
type: SiteQuality
SIO_000300: 1.553996e6

FS
type: SiteQuality
SIO_000300: 1.176e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

QD
type: SiteQuality
SIO_000300: 1.432e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8104
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 548
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4583
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.424257998201208e-5
allele num: 15566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.604157977477622e-5
allele num: 62338
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.871540099361249e-5
allele num: 11272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

DP
type: SiteQuality
SIO_000300: 1.530114e6

VQSLOD
type: SiteQuality
SIO_000300: 1.34e-1

FS
type: SiteQuality
SIO_000300: 5.027e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

QD
type: SiteQuality
SIO_000300: 8.59e0

GenotypeQuality
all individuals: 322
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8098
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.418485237483954e-5
allele num: 62320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.559e0

QD
type: SiteQuality
SIO_000300: 1.029e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.62e-1

FS
type: SiteQuality
SIO_000300: 9.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.529115e6

GenotypeQuality
all individuals: 939
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4901
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8047
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38842
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 391
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.488450558006747e-5
allele num: 15412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.22061191626409e-5
allele num: 62100
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 1.519554e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

FS
type: SiteQuality
SIO_000300: 2.531e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

GenotypeQuality
all individuals: 4952
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.834031582339671e-5
allele num: 62060
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.089324618736383e-4
allele num: 9180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

FS
type: SiteQuality
SIO_000300: 2.439e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.342e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

QD
type: SiteQuality
SIO_000300: 1.4e1

DP
type: SiteQuality
SIO_000300: 1.518482e6