15-52903772-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903772
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903772
    reference: chr 15
allele count: 10717
allele frequency: 8.891562266655605e-2
allele num: 120530
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.404A>G
  hgvsp: ENSP00000261844.7:p.Gln135Arg
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.404A>G
  hgvsp: ENSP00000457666.1:p.Gln135Arg
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.425A>G
  hgvsp: ENSP00000443598.2:p.Gln142Arg
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.404A>G
  hgvsp: ENSP00000444447.2:p.Gln135Arg
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.140A>G
  hgvsp: ENSP00000382153.4:p.Gln47Arg
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 3.25e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.75e1
  variant carriers: 774
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 3.75e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 650
genotype depth: GenotypeDepth
  all individuals: 15046
  bin: 2.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 529
genotype depth: GenotypeDepth
  all individuals: 19006
  bin: 2.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 398
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 645
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.25e1
  variant carriers: 716
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 4.75e1
  variant carriers: 477
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 7.25e1
  variant carriers: 798
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 814
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 8.25e1
  variant carriers: 752
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 5.25e1
  variant carriers: 625
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 9.75e1
  variant carriers: 2210
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33093
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Gln135Arg
num of homozygotes: 592
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-52903773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903773
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903773
    reference: chr 15
allele count: 1
allele frequency: 8.295037908323241e-6
allele num: 120554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.403C>T
  hgvsp: ENSP00000444447.2:p.Gln135Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.403C>T
  hgvsp: ENSP00000457666.1:p.Gln135Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.403C>T
  hgvsp: ENSP00000261844.7:p.Gln135Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.424C>T
  hgvsp: ENSP00000443598.2:p.Gln142Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.139C>T
  hgvsp: ENSP00000382153.4:p.Gln47Ter
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8793
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln135Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

15-52903775-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903775
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903775
    reference: chr 15
allele count: 6
allele frequency: 4.976362279173924e-5
allele num: 120570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.401G>A
  hgvsp: ENSP00000457666.1:p.Arg134Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.137G>A
  hgvsp: ENSP00000382153.4:p.Arg46Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.422G>A
  hgvsp: ENSP00000443598.2:p.Arg141Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.401G>A
  hgvsp: ENSP00000261844.7:p.Arg134Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.401G>A
  hgvsp: ENSP00000444447.2:p.Arg134Gln
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg134Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

15-52903776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903776
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903776
    reference: chr 15
allele count: 1
allele frequency: 8.292974192264313e-6
allele num: 120584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.400C>T
  hgvsp: ENSP00000457666.1:p.Arg134Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.421C>T
  hgvsp: ENSP00000443598.2:p.Arg141Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.136C>T
  hgvsp: ENSP00000382153.4:p.Arg46Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.400C>T
  hgvsp: ENSP00000261844.7:p.Arg134Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.400C>T
  hgvsp: ENSP00000444447.2:p.Arg134Ter
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8801
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg134Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

15-52903778-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903778
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903778
    reference: chr 15
allele count: 1
allele frequency: 8.291873963515755e-6
allele num: 120600
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.398C>G
  hgvsp: ENSP00000444447.2:p.Pro133Arg
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.398C>G
  hgvsp: ENSP00000261844.7:p.Pro133Arg
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.398C>G
  hgvsp: ENSP00000457666.1:p.Pro133Arg
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.134C>G
  hgvsp: ENSP00000382153.4:p.Pro45Arg
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.419C>G
  hgvsp: ENSP00000443598.2:p.Pro140Arg
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro133Arg
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

15-52903779-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903779
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903779
    reference: chr 15
allele count: 1
allele frequency: 8.291598951941893e-6
allele num: 120604
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.397C>G
  hgvsp: ENSP00000457666.1:p.Pro133Ala
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.397C>G
  hgvsp: ENSP00000261844.7:p.Pro133Ala
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.397C>G
  hgvsp: ENSP00000444447.2:p.Pro133Ala
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.133C>G
  hgvsp: ENSP00000382153.4:p.Pro45Ala
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.418C>G
  hgvsp: ENSP00000443598.2:p.Pro140Ala
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro133Ala
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

15-52903783-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903783
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903783
    reference: chr 15
allele count: 1
allele frequency: 8.28953694646617e-6
allele num: 120634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.414A>T
  hgvsp: ENST00000546305.2:c.414A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.393A>T
  hgvsp: ENST00000534964.2:c.393A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.393A>T
  hgvsp: ENST00000562135.1:c.393A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.129A>T
  hgvsp: ENST00000399202.4:c.129A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.393A>T
  hgvsp: ENST00000261844.7:c.393A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro131Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

15-52903785-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903785
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903785
    reference: chr 15
allele count: 1
allele frequency: 8.289949265510494e-6
allele num: 120628
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.391C>G
  hgvsp: ENSP00000457666.1:p.Pro131Ala
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.391C>G
  hgvsp: ENSP00000444447.2:p.Pro131Ala
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.391C>G
  hgvsp: ENSP00000261844.7:p.Pro131Ala
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.412C>G
  hgvsp: ENSP00000443598.2:p.Pro138Ala
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.127C>G
  hgvsp: ENSP00000382153.4:p.Pro43Ala
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8808
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro131Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

15-52903786-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903786
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903786
    reference: chr 15
allele count: 6
allele frequency: 4.973392350922564e-5
allele num: 120642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.126G>C
  hgvsp: ENSP00000382153.4:p.Glu42Asp
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.411G>C
  hgvsp: ENSP00000443598.2:p.Glu137Asp
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.390G>C
  hgvsp: ENSP00000261844.7:p.Glu130Asp
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.390G>C
  hgvsp: ENSP00000444447.2:p.Glu130Asp
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.390G>C
  hgvsp: ENSP00000457666.1:p.Glu130Asp
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12399
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu130Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

15-52903787-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903787
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903787
    reference: chr 15
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.389A>G
  hgvsp: ENSP00000457666.1:p.Glu130Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.389A>G
  hgvsp: ENSP00000261844.7:p.Glu130Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.410A>G
  hgvsp: ENSP00000443598.2:p.Glu137Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.125A>G
  hgvsp: ENSP00000382153.4:p.Glu42Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.389A>G
  hgvsp: ENSP00000444447.2:p.Glu130Gly
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3848
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu130Gly
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

15-52903799-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903799
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903799
    reference: chr 15
allele count: 2
allele frequency: 1.657165583985152e-5
allele num: 120688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.377G>A
  hgvsp: ENSP00000444447.2:p.Arg126Lys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.377G>A
  hgvsp: ENSP00000457666.1:p.Arg126Lys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.377G>A
  hgvsp: ENSP00000261844.7:p.Arg126Lys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.113G>A
  hgvsp: ENSP00000382153.4:p.Arg38Lys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.398G>A
  hgvsp: ENSP00000443598.2:p.Arg133Lys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.377G>A
  hgvsp: ENSP00000455578.1:p.Arg126Lys
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg126Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

15-52903813-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903813
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903813
    reference: chr 15
allele count: 18
allele frequency: 1.491127789651573e-4
allele num: 120714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.363A>G
  hgvsp: ENST00000562135.1:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.384A>G
  hgvsp: ENST00000546305.2:c.384A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.363A>G
  hgvsp: ENST00000261844.7:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.363A>G
  hgvsp: ENST00000566768.1:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.363A>G
  hgvsp: ENST00000534964.2:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.99A>G
  hgvsp: ENST00000399202.4:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3855
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 39404
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala121Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-52903814-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903814
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903814
    reference: chr 15
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.362C>A
  hgvsp: ENSP00000457666.1:p.Ala121Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.98C>A
  hgvsp: ENSP00000382153.4:p.Ala33Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.362C>A
  hgvsp: ENSP00000455578.1:p.Ala121Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.362C>A
  hgvsp: ENSP00000261844.7:p.Ala121Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.383C>A
  hgvsp: ENSP00000443598.2:p.Ala128Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.362C>A
  hgvsp: ENSP00000444447.2:p.Ala121Glu
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3837
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39411
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala121Glu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP

15-52903815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903815
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903815
    reference: chr 15
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.361G>A
  hgvsp: ENSP00000455578.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.382G>A
  hgvsp: ENSP00000443598.2:p.Ala128Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.361G>A
  hgvsp: ENSP00000444447.2:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.361G>A
  hgvsp: ENSP00000457666.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.361G>A
  hgvsp: ENSP00000261844.7:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.97G>A
  hgvsp: ENSP00000382153.4:p.Ala33Thr
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8829
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3837
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala121Thr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

15-52903827-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903827
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903827
    reference: chr 15
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.370A>C
  hgvsp: ENSP00000443598.2:p.Ile124Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.349A>C
  hgvsp: ENSP00000457666.1:p.Ile117Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.349A>C
  hgvsp: ENSP00000444447.2:p.Ile117Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.85A>C
  hgvsp: ENSP00000382153.4:p.Ile29Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.349A>C
  hgvsp: ENSP00000455578.1:p.Ile117Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.349A>C
  hgvsp: ENSP00000261844.7:p.Ile117Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.349A>C
  hgvsp: ENSP00000457402.1:p.Ile117Leu
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8829
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile117Leu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

15-52903828-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903828
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903828
    reference: chr 15
allele count: 552
allele frequency: 4.572640368462035e-3
allele num: 120718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.348G>A
  hgvsp: ENST00000562135.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.348G>A
  hgvsp: ENST00000261844.7:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.348G>A
  hgvsp: ENST00000566768.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.348G>A
  hgvsp: ENST00000561490.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.369G>A
  hgvsp: ENST00000546305.2:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.84G>A
  hgvsp: ENST00000399202.4:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.348G>A
  hgvsp: ENST00000534964.2:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 15850
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23180
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 12337
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8790
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala116Ala
num of homozygotes: 13
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

15-52903837-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903837
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903837
    reference: chr 15
allele count: 56
allele frequency: 4.638372593844217e-4
allele num: 120732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.339T>C
  hgvsp: ENST00000534964.2:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.339T>C
  hgvsp: ENST00000562135.1:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.339T>C
  hgvsp: ENST00000561490.1:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.339T>C
  hgvsp: ENST00000261844.7:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.360T>C
  hgvsp: ENST00000546305.2:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.75T>C
  hgvsp: ENST00000399202.4:c.75T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.339T>C
  hgvsp: ENST00000566768.1:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8867
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39659
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn113Asn
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

15-52903840-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903840
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903840
    reference: chr 15
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.336A>C
  hgvsp: ENST00000562135.1:c.336A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.336A>C
  hgvsp: ENST00000561490.1:c.336A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.72A>C
  hgvsp: ENST00000399202.4:c.72A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.336A>C
  hgvsp: ENST00000534964.2:c.336A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.336A>C
  hgvsp: ENST00000566768.1:c.336A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.336A>C
  hgvsp: ENST00000261844.7:c.336A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.357A>C
  hgvsp: ENST00000546305.2:c.357A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu112Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/15-52903845-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903845
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903845
    reference: chr 15
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.352G>T
  hgvsp: ENSP00000443598.2:p.Asp118Tyr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.331G>T
  hgvsp: ENSP00000457666.1:p.Asp111Tyr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.331G>T
  hgvsp: ENSP00000261844.7:p.Asp111Tyr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.331G>T
  hgvsp: ENSP00000457402.1:p.Asp111Tyr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.67G>T
  hgvsp: ENSP00000382153.4:p.Asp23Tyr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.331G>T
  hgvsp: ENSP00000444447.2:p.Asp111Tyr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.331G>T
  hgvsp: ENSP00000455578.1:p.Asp111Tyr
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp111Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-52903855-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903855
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903855
    reference: chr 15
allele count: 3
allele frequency: 2.484554353767412e-5
allele num: 120746
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.321A>G
  hgvsp: ENST00000261844.7:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.342A>G
  hgvsp: ENST00000546305.2:c.342A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.57A>G
  hgvsp: ENST00000399202.4:c.57A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.321A>G
  hgvsp: ENST00000562135.1:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.321A>G
  hgvsp: ENST00000534964.2:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.321A>G
  hgvsp: ENST00000561490.1:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.321A>G
  hgvsp: ENST00000566768.1:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3583
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr107Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

15-52903869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903869
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903869
    reference: chr 15
allele count: 2
allele frequency: 1.656369569178275e-5
allele num: 120746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.328G>A
  hgvsp: ENSP00000443598.2:p.Asp110Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.43G>A
  hgvsp: ENSP00000382153.4:p.Asp15Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.307G>A
  hgvsp: ENSP00000457666.1:p.Asp103Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.307G>A
  hgvsp: ENSP00000444447.2:p.Asp103Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.307G>A
  hgvsp: ENSP00000455578.1:p.Asp103Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.307G>A
  hgvsp: ENSP00000457402.1:p.Asp103Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.307G>A
  hgvsp: ENSP00000261844.7:p.Asp103Asn
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp103Asn
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ

15-52903872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903872
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903872
    reference: chr 15
allele count: 2
allele frequency: 1.656397005234214e-5
allele num: 120744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.40G>A
  hgvsp: ENSP00000382153.4:p.Asp14Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.325G>A
  hgvsp: ENSP00000443598.2:p.Asp109Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.304G>A
  hgvsp: ENSP00000444447.2:p.Asp102Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.304G>A
  hgvsp: ENSP00000455578.1:p.Asp102Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.304G>A
  hgvsp: ENSP00000457402.1:p.Asp102Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.304G>A
  hgvsp: ENSP00000261844.7:p.Asp102Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.304G>A
  hgvsp: ENSP00000457666.1:p.Asp102Asn
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp102Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

15-52903873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903873
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903873
    reference: chr 15
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.303C>T
  hgvsp: ENST00000566768.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.324C>T
  hgvsp: ENST00000546305.2:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.303C>T
  hgvsp: ENST00000534964.2:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.303C>T
  hgvsp: ENST00000562135.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.303C>T
  hgvsp: ENST00000561490.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.303C>T
  hgvsp: ENST00000261844.7:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.39C>T
  hgvsp: ENST00000399202.4:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser101Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

15-52903877-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903877
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903877
    reference: chr 15
allele count: 2
allele frequency: 1.656397005234214e-5
allele num: 120744
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.299A>C
  hgvsp: ENSP00000261844.7:p.Tyr100Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.299A>C
  hgvsp: ENSP00000457666.1:p.Tyr100Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.299A>C
  hgvsp: ENSP00000457402.1:p.Tyr100Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.299A>C
  hgvsp: ENSP00000455578.1:p.Tyr100Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.299A>C
  hgvsp: ENSP00000444447.2:p.Tyr100Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.35A>C
  hgvsp: ENSP00000382153.4:p.Tyr12Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.320A>C
  hgvsp: ENSP00000443598.2:p.Tyr107Ser
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr100Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

15-52903913-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903913
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903913
    reference: chr 15
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.263T>A
  hgvsp: ENSP00000457402.1:p.Ile88Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.263T>A
  hgvsp: ENSP00000261844.7:p.Ile88Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.263T>A
  hgvsp: ENSP00000444447.2:p.Ile88Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.263T>A
  hgvsp: ENSP00000457666.1:p.Ile88Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.263T>A
  hgvsp: ENSP00000456725.1:p.Ile88Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.263T>A
  hgvsp: ENSP00000457120.1:p.Ile88Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-2T>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.263T>A
  hgvsp: ENSP00000455578.1:p.Ile88Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.284T>A
  hgvsp: ENSP00000443598.2:p.Ile95Asn
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile88Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-52903921-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903921
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903921
    reference: chr 15
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.255C>T
  hgvsp: ENST00000261844.7:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.255C>T
  hgvsp: ENST00000566768.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.276C>T
  hgvsp: ENST00000546305.2:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.255C>T
  hgvsp: ENST00000561543.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.255C>T
  hgvsp: ENST00000534964.2:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.255C>T
  hgvsp: ENST00000562135.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.255C>T
  hgvsp: ENST00000561490.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.255C>T
  hgvsp: ENST00000568863.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-10C>T
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8868
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn85Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

15-52903924-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903924
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903924
    reference: chr 15
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.252T>C
  hgvsp: ENST00000566768.1:c.252T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.252T>C
  hgvsp: ENST00000561543.1:c.252T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.252T>C
  hgvsp: ENST00000562135.1:c.252T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.252T>C
  hgvsp: ENST00000568863.1:c.252T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.252T>C
  hgvsp: ENST00000534964.2:c.252T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.273T>C
  hgvsp: ENST00000546305.2:c.273T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-13T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.252T>C
  hgvsp: ENST00000261844.7:c.252T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.252T>C
  hgvsp: ENST00000561490.1:c.252T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn84Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/15-52903927-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903927
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903927
    reference: chr 15
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.249G>T
  hgvsp: ENSP00000455578.1:p.Lys83Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.249G>T
  hgvsp: ENSP00000457666.1:p.Lys83Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.249G>T
  hgvsp: ENSP00000457120.1:p.Lys83Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.249G>T
  hgvsp: ENSP00000456725.1:p.Lys83Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.270G>T
  hgvsp: ENSP00000443598.2:p.Lys90Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.249G>T
  hgvsp: ENSP00000261844.7:p.Lys83Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.249G>T
  hgvsp: ENSP00000457402.1:p.Lys83Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-16G>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.249G>T
  hgvsp: ENSP00000444447.2:p.Lys83Asn
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys83Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-52903933-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903933
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903933
    reference: chr 15
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.264G>T
  hgvsp: ENSP00000443598.2:p.Leu88Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-22G>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.243G>T
  hgvsp: ENSP00000444447.2:p.Leu81Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.243G>T
  hgvsp: ENSP00000457666.1:p.Leu81Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.243G>T
  hgvsp: ENSP00000457402.1:p.Leu81Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.243G>T
  hgvsp: ENSP00000261844.7:p.Leu81Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.243G>T
  hgvsp: ENSP00000455578.1:p.Leu81Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.243G>T
  hgvsp: ENSP00000457120.1:p.Leu81Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.243G>T
  hgvsp: ENSP00000456725.1:p.Leu81Phe
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu81Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/15-52903936-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903936
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903936
    reference: chr 15
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.240G>T
  hgvsp: ENSP00000455578.1:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.240G>T
  hgvsp: ENSP00000456725.1:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.261G>T
  hgvsp: ENSP00000443598.2:p.Leu87Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.240G>T
  hgvsp: ENSP00000457120.1:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.240G>T
  hgvsp: ENSP00000457666.1:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.240G>T
  hgvsp: ENSP00000261844.7:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.240G>T
  hgvsp: ENSP00000444447.2:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.240G>T
  hgvsp: ENSP00000457402.1:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-25G>T
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu80Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

15-52903938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903938
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903938
    reference: chr 15
allele count: 3
allele frequency: 2.485007123687088e-5
allele num: 120724
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.238T>C
  hgvsp: ENST00000261844.7:c.238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.238T>C
  hgvsp: ENST00000561543.1:c.238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-27T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.259T>C
  hgvsp: ENST00000546305.2:c.259T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.238T>C
  hgvsp: ENST00000566768.1:c.238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.238T>C
  hgvsp: ENST00000561490.1:c.238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.238T>C
  hgvsp: ENST00000562135.1:c.238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.238T>C
  hgvsp: ENST00000568863.1:c.238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.238T>C
  hgvsp: ENST00000534964.2:c.238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu80Leu
num of homozygotes: 1
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

15-52903941-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903941
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903941
    reference: chr 15
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.235A>T
  hgvsp: ENSP00000457666.1:p.Thr79Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.235A>T
  hgvsp: ENSP00000455578.1:p.Thr79Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.235A>T
  hgvsp: ENSP00000444447.2:p.Thr79Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.235A>T
  hgvsp: ENSP00000456725.1:p.Thr79Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-30A>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.235A>T
  hgvsp: ENSP00000457120.1:p.Thr79Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.235A>T
  hgvsp: ENSP00000261844.7:p.Thr79Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.256A>T
  hgvsp: ENSP00000443598.2:p.Thr86Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.235A>T
  hgvsp: ENSP00000457402.1:p.Thr79Ser
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr79Ser
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/15-52903958-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903958
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903958
    reference: chr 15
allele count: 1
allele frequency: 8.285965232089886e-6
allele num: 120686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.218G>T
  hgvsp: ENSP00000457402.1:p.Arg73Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.218G>T
  hgvsp: ENSP00000457666.1:p.Arg73Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.218G>T
  hgvsp: ENSP00000444447.2:p.Arg73Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.239G>T
  hgvsp: ENSP00000443598.2:p.Arg80Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.218G>T
  hgvsp: ENSP00000456725.1:p.Arg73Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.218G>T
  hgvsp: ENSP00000261844.7:p.Arg73Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.218G>T
  hgvsp: ENSP00000457120.1:p.Arg73Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.218G>T
  hgvsp: ENSP00000455578.1:p.Arg73Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-47G>T
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg73Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-52903958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903958
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903958
    reference: chr 15
allele count: 58
allele frequency: 4.805859834612134e-4
allele num: 120686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.218G>A
  hgvsp: ENSP00000457402.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.239G>A
  hgvsp: ENSP00000443598.2:p.Arg80Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-47G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.218G>A
  hgvsp: ENSP00000457120.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.218G>A
  hgvsp: ENSP00000261844.7:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.218G>A
  hgvsp: ENSP00000444447.2:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.218G>A
  hgvsp: ENSP00000455578.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.218G>A
  hgvsp: ENSP00000457666.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.218G>A
  hgvsp: ENSP00000456725.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23442
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg73Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/15-52903970-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903970
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903970
    reference: chr 15
allele count: 1
allele frequency: 8.294212298657997e-6
allele num: 120566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.206G>T
  hgvsp: ENSP00000456725.1:p.Arg69Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.206G>T
  hgvsp: ENSP00000457666.1:p.Arg69Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.227G>T
  hgvsp: ENSP00000443598.2:p.Arg76Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.206G>T
  hgvsp: ENSP00000444447.2:p.Arg69Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.206G>T
  hgvsp: ENSP00000261844.7:p.Arg69Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.206G>T
  hgvsp: ENSP00000457120.1:p.Arg69Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.206G>T
  hgvsp: ENSP00000457402.1:p.Arg69Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.206G>T
  hgvsp: ENSP00000455578.1:p.Arg69Leu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-59G>T
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg69Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-52903971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903971
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903971
    reference: chr 15
allele count: 3
allele frequency: 2.488965585902499e-5
allele num: 120532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.205C>T
  hgvsp: ENSP00000457666.1:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.205C>T
  hgvsp: ENSP00000455578.1:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.226C>T
  hgvsp: ENSP00000443598.2:p.Arg76Cys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-60C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.205C>T
  hgvsp: ENSP00000457120.1:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.205C>T
  hgvsp: ENSP00000444447.2:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.205C>T
  hgvsp: ENSP00000456725.1:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.205C>T
  hgvsp: ENSP00000261844.7:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.205C>T
  hgvsp: ENSP00000457402.1:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23439
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg69Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

15-52903981-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903981
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903981
    reference: chr 15
allele count: 4
allele frequency: 3.323584153150758e-5
allele num: 120352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.202-7C>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.202-7C>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.202-7C>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.223-7C>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-7C>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.202-7C>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.202-7C>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.202-7C>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.202-7C>A
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: c.202-7C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

15-52903986-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52903986
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52903986
    reference: chr 15
allele count: 1
allele frequency: 8.320021299254527e-6
allele num: 120192
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.202-12A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.202-12A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.202-12A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.202-12A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.202-12A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.202-12A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.223-12A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-12A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.202-12A>G
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

15-52904000-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52904000
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52904000
    reference: chr 15
allele count: 1
allele frequency: 8.353939717970996e-6
allele num: 119704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.202-26T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.202-26T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.202-26T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.202-26T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-26T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.223-26T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.202-26T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.202-26T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.202-26T>C
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3507
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35008
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-52904001-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52904001
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52904001
    reference: chr 15
allele count: 1
allele frequency: 8.354358468813179e-6
allele num: 119698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.202-27A>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.202-27A>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.202-27A>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.202-27A>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-27A>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.202-27A>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.202-27A>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.223-27A>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.202-27A>T
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21600
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-52904001-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52904001
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52904001
    reference: chr 15
allele count: 1
allele frequency: 8.354358468813179e-6
allele num: 119698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.223-27A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.202-27A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.202-27A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.202-27A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.202-27A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.202-27A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.202-27A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-27A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.202-27A>G
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21600
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

15-52904002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52904002
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52904002
    reference: chr 15
allele count: 2
allele frequency: 1.671458180116333e-5
allele num: 119656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.202-28C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.223-28C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.202-28C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.202-28C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.202-28C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.202-28C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-28C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.202-28C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.202-28C>T
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12237
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7432
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-52904002-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52904002
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52904002
    reference: chr 15
allele count: 1
allele frequency: 8.357290900581667e-6
allele num: 119656
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.202-28C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.202-28C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.202-28C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.223-28C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-28C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.202-28C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.202-28C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.202-28C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.202-28C>G
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21323
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum

15-52904016-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52904016
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52904016
    reference: chr 15
allele count: 4
allele frequency: 3.374786966572735e-5
allele num: 118526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.202-42G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-42G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.202-42G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.202-42G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.202-42G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.223-42G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.202-42G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.202-42G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.202-42G>A
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13770
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

15-52905821-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905821
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905821
    reference: chr 15
allele count: 2
allele frequency: 2.255299954894001e-5
allele num: 88680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.201+49A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1847A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.201+49A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.201+49A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.201+49A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.201+49A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.201+49A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.201+49A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.222+49A>G
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3767
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4635
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-52905821-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905821
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905823
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 88680
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.201+47_201+48dupTT
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.201+47_201+48dupTT
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.201+47_201+48dupTT
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.222+47_222+48dupTT
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.201+47_201+48dupTT
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.201+47_201+48dupTT
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.201+47_201+48dupTT
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1849_-63-1848dupTT
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.201+47_201+48dupTT
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14244
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3094
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5091
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

15-52905832-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905832
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905832
    reference: chr 15
allele count: 1
allele frequency: 1.117368374005542e-5
allele num: 89496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.201+38T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.222+38T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.201+38T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.201+38T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1858T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.201+38T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.201+38T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.201+38T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.201+38T>C
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5051
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-52905838-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905838
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905838
    reference: chr 15
allele count: 4
allele frequency: 4.403734366742998e-5
allele num: 90832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.201+32T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.222+32T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.201+32T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.201+32T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.201+32T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1864T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.201+32T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.201+32T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.201+32T>G
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14204
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18332
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4685
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

15-52905848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905848
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905848
    reference: chr 15
allele count: 4
allele frequency: 4.166232684095407e-5
allele num: 96010
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.201+22C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.201+22C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.201+22C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1874C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.201+22C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.201+22C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.201+22C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.201+22C>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.222+22C>T
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28250
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4256
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

15-52905848-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905848
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905848
    reference: chr 15
allele count: 1
allele frequency: 1.041558171023852e-5
allele num: 96010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.201+22C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.201+22C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.201+22C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.201+22C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1874C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.201+22C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.201+22C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.222+22C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.201+22C>G
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3263
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4256
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31492
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-52905854-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905854
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905854
    reference: chr 15
allele count: 1
allele frequency: 9.882985452245414e-6
allele num: 101184
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.201+16T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.201+16T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.222+16T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.201+16T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.201+16T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.201+16T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.201+16T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.201+16T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1880T>G
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33516
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9793
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

15-52905865-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905865
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905865
    reference: chr 15
allele count: 1
allele frequency: 9.299557341070565e-6
allele num: 107532
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.201+5G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.201+5G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.201+5G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.201+5G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.201+5G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.201+5G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.201+5G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1891G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.222+5G>A
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6678
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
hgvs: c.201+5G>A
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-52905878-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905878
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905878
    reference: chr 15
allele count: 3
allele frequency: 2.646156017358783e-5
allele num: 113372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.193C>G
  hgvsp: ENSP00000457402.1:p.Leu65Val
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1904C>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.214C>G
  hgvsp: ENSP00000443598.2:p.Leu72Val
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.193C>G
  hgvsp: ENSP00000456725.1:p.Leu65Val
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.193C>G
  hgvsp: ENSP00000455578.1:p.Leu65Val
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.193C>G
  hgvsp: ENSP00000261844.7:p.Leu65Val
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.193C>G
  hgvsp: ENSP00000457666.1:p.Leu65Val
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.193C>G
  hgvsp: ENSP00000444447.2:p.Leu65Val
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.193C>G
  hgvsp: ENSP00000457120.1:p.Leu65Val
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10080
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu65Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

15-52905884-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905884
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905884
    reference: chr 15
allele count: 1
allele frequency: 8.697467297522961e-6
allele num: 114976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.187G>A
  hgvsp: ENSP00000457402.1:p.Asp63Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1910G>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.187G>A
  hgvsp: ENSP00000444447.2:p.Asp63Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.187G>A
  hgvsp: ENSP00000456725.1:p.Asp63Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.187G>A
  hgvsp: ENSP00000261844.7:p.Asp63Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.187G>A
  hgvsp: ENSP00000457666.1:p.Asp63Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.187G>A
  hgvsp: ENSP00000457120.1:p.Asp63Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.208G>A
  hgvsp: ENSP00000443598.2:p.Asp70Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.187G>A
  hgvsp: ENSP00000455578.1:p.Asp63Asn
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp63Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

15-52905898-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905898
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905898
    reference: chr 15
allele count: 1
allele frequency: 8.541168431841476e-6
allele num: 117080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.173A>C
  hgvsp: ENSP00000457120.1:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.173A>C
  hgvsp: ENSP00000457666.1:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.173A>C
  hgvsp: ENSP00000444447.2:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.173A>C
  hgvsp: ENSP00000455578.1:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.194A>C
  hgvsp: ENSP00000443598.2:p.Lys65Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.173A>C
  hgvsp: ENSP00000457402.1:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.173A>C
  hgvsp: ENSP00000456725.1:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1924A>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.173A>C
  hgvsp: ENSP00000261844.7:p.Lys58Thr
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys58Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

15-52905909-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905909
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905909
    reference: chr 15
allele count: 1
allele frequency: 8.477737461426295e-6
allele num: 117956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.162A>G
  hgvsp: ENST00000561490.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.162A>G
  hgvsp: ENST00000561543.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.183A>G
  hgvsp: ENST00000546305.2:c.183A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.162A>G
  hgvsp: ENST00000261844.7:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.162A>G
  hgvsp: ENST00000534964.2:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.162A>G
  hgvsp: ENST00000568863.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.162A>G
  hgvsp: ENST00000562135.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1935A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.162A>G
  hgvsp: ENST00000566768.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro54Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-52905910-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905910
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905910
    reference: chr 15
allele count: 1
allele frequency: 8.477162524159914e-6
allele num: 117964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.182C>A
  hgvsp: ENSP00000443598.2:p.Pro61Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.161C>A
  hgvsp: ENSP00000457666.1:p.Pro54Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.161C>A
  hgvsp: ENSP00000457120.1:p.Pro54Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.161C>A
  hgvsp: ENSP00000444447.2:p.Pro54Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.161C>A
  hgvsp: ENSP00000456725.1:p.Pro54Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.161C>A
  hgvsp: ENSP00000261844.7:p.Pro54Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.161C>A
  hgvsp: ENSP00000455578.1:p.Pro54Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.161C>A
  hgvsp: ENSP00000457402.1:p.Pro54Gln
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1936C>A
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 41811
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro54Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum

15-52905911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905911
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905911
    reference: chr 15
allele count: 2
allele frequency: 1.694484453105143e-5
allele num: 118030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.160C>T
  hgvsp: ENSP00000456725.1:p.Pro54Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.160C>T
  hgvsp: ENSP00000457120.1:p.Pro54Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.160C>T
  hgvsp: ENSP00000455578.1:p.Pro54Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.160C>T
  hgvsp: ENSP00000261844.7:p.Pro54Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.181C>T
  hgvsp: ENSP00000443598.2:p.Pro61Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.160C>T
  hgvsp: ENSP00000444447.2:p.Pro54Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.160C>T
  hgvsp: ENSP00000457402.1:p.Pro54Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.160C>T
  hgvsp: ENSP00000457666.1:p.Pro54Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1937C>T
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro54Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

15-52905916-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905916
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905916
    reference: chr 15
allele count: 5
allele frequency: 4.228973543541512e-5
allele num: 118232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.155G>C
  hgvsp: ENSP00000444447.2:p.Cys52Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.155G>C
  hgvsp: ENSP00000457120.1:p.Cys52Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.155G>C
  hgvsp: ENSP00000261844.7:p.Cys52Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.155G>C
  hgvsp: ENSP00000457666.1:p.Cys52Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.155G>C
  hgvsp: ENSP00000456725.1:p.Cys52Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1942G>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.155G>C
  hgvsp: ENSP00000457402.1:p.Cys52Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.155G>C
  hgvsp: ENSP00000455578.1:p.Cys52Ser
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.176G>C
  hgvsp: ENSP00000443598.2:p.Cys59Ser
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12346
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys52Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

15-52905922-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905922
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905922
    reference: chr 15
allele count: 1
allele frequency: 8.442950980226608e-6
allele num: 118442
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.149A>C
  hgvsp: ENSP00000455578.1:p.Gln50Pro
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1948A>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.149A>C
  hgvsp: ENSP00000261844.7:p.Gln50Pro
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.149A>C
  hgvsp: ENSP00000444447.2:p.Gln50Pro
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.149A>C
  hgvsp: ENSP00000457120.1:p.Gln50Pro
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.149A>C
  hgvsp: ENSP00000456725.1:p.Gln50Pro
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.149A>C
  hgvsp: ENSP00000457402.1:p.Gln50Pro
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.170A>C
  hgvsp: ENSP00000443598.2:p.Gln57Pro
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.149A>C
  hgvsp: ENSP00000457666.1:p.Gln50Pro
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln50Pro
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS

15-52905953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905953
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905953
    reference: chr 15
allele count: 1
allele frequency: 8.405056481979558e-6
allele num: 118976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.118C>T
  hgvsp: ENSP00000457402.1:p.Arg40Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.118C>T
  hgvsp: ENSP00000455578.1:p.Arg40Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.139C>T
  hgvsp: ENSP00000443598.2:p.Arg47Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.118C>T
  hgvsp: ENSP00000444447.2:p.Arg40Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.118C>T
  hgvsp: ENSP00000456725.1:p.Arg40Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.118C>T
  hgvsp: ENSP00000457120.1:p.Arg40Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.118C>T
  hgvsp: ENSP00000261844.7:p.Arg40Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.118C>T
  hgvsp: ENSP00000457666.1:p.Arg40Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-1979C>T
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13992
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4286
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg40Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

15-52905978-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905978
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905978
    reference: chr 15
allele count: 1
allele frequency: 8.389965601141035e-6
allele num: 119190
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.93A>G
  hgvsp: ENST00000568863.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.93A>G
  hgvsp: ENST00000261844.7:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.114A>G
  hgvsp: ENST00000546305.2:c.114A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.93A>G
  hgvsp: ENST00000562135.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-2004A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.93A>G
  hgvsp: ENST00000534964.2:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.93A>G
  hgvsp: ENST00000561490.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.93A>G
  hgvsp: ENST00000566768.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.93A>G
  hgvsp: ENST00000561543.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg31Arg
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

15-52905987-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52905987
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52905987
    reference: chr 15
allele count: 2
allele frequency: 1.679289324757762e-5
allele num: 119098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.84A>G
  hgvsp: ENST00000568863.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.84A>G
  hgvsp: ENST00000562135.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.84A>G
  hgvsp: ENST00000561490.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-2013A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.84A>G
  hgvsp: ENST00000261844.7:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.105A>G
  hgvsp: ENST00000546305.2:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.84A>G
  hgvsp: ENST00000534964.2:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.84A>G
  hgvsp: ENST00000561543.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.84A>G
  hgvsp: ENST00000566768.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr28Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/15-52906009-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52906009
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52906009
    reference: chr 15
allele count: 1
allele frequency: 8.466253513495208e-6
allele num: 118116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.62T>G
  hgvsp: ENSP00000457666.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.62T>G
  hgvsp: ENSP00000456725.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.62T>G
  hgvsp: ENSP00000444447.2:p.Val21Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.83T>G
  hgvsp: ENSP00000443598.2:p.Val28Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.62T>G
  hgvsp: ENSP00000261844.7:p.Val21Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-2035T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.62T>G
  hgvsp: ENSP00000457120.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.62T>G
  hgvsp: ENSP00000455578.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.62T>G
  hgvsp: ENSP00000457402.1:p.Val21Gly
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49934
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val21Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-52906026-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52906026
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52906026
    reference: chr 15
allele count: 1
allele frequency: 8.787191789247992e-6
allele num: 113802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.45T>G
  hgvsp: ENSP00000455578.1:p.Asp15Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.45T>G
  hgvsp: ENSP00000457120.1:p.Asp15Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.45T>G
  hgvsp: ENSP00000261844.7:p.Asp15Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.45T>G
  hgvsp: ENSP00000457402.1:p.Asp15Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.45T>G
  hgvsp: ENSP00000444447.2:p.Asp15Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.45T>G
  hgvsp: ENSP00000456725.1:p.Asp15Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-2052T>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.45T>G
  hgvsp: ENSP00000457666.1:p.Asp15Glu
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.66T>G
  hgvsp: ENSP00000443598.2:p.Asp22Glu
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14672
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp15Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

15-52906027-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52906027
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52906027
    reference: chr 15
allele count: 3
allele frequency: 2.636296530633766e-5
allele num: 113796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.65A>G
  hgvsp: ENSP00000443598.2:p.Asp22Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.44A>G
  hgvsp: ENSP00000444447.2:p.Asp15Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.44A>G
  hgvsp: ENSP00000456725.1:p.Asp15Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.44A>G
  hgvsp: ENSP00000457402.1:p.Asp15Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.44A>G
  hgvsp: ENSP00000457120.1:p.Asp15Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.44A>G
  hgvsp: ENSP00000455578.1:p.Asp15Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.44A>G
  hgvsp: ENSP00000261844.7:p.Asp15Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-2053A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.44A>G
  hgvsp: ENSP00000457666.1:p.Asp15Gly
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45582
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp15Gly
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-52906029-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52906029
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52906029
    reference: chr 15
allele count: 9
allele frequency: 8.142438388882857e-5
allele num: 110532
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.42T>C
  hgvsp: ENST00000261844.7:c.42T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.42T>C
  hgvsp: ENST00000562135.1:c.42T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.63T>C
  hgvsp: ENST00000546305.2:c.63T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.42T>C
  hgvsp: ENST00000566768.1:c.42T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-2055T>C
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.42T>C
  hgvsp: ENST00000568863.1:c.42T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.42T>C
  hgvsp: ENST00000561490.1:c.42T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.42T>C
  hgvsp: ENST00000561543.1:c.42T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.42T>C
  hgvsp: ENST00000534964.2:c.42T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13726
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32328
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8657
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr14Tyr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

15-52906031-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52906031
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52906031
    reference: chr 15
allele count: 4
allele frequency: 3.620040544454098e-5
allele num: 110496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.40T>A
  hgvsp: ENSP00000456725.1:p.Tyr14Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-2057T>A
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.40T>A
  hgvsp: ENSP00000455578.1:p.Tyr14Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.40T>A
  hgvsp: ENSP00000457402.1:p.Tyr14Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.40T>A
  hgvsp: ENSP00000261844.7:p.Tyr14Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.61T>A
  hgvsp: ENSP00000443598.2:p.Tyr21Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.40T>A
  hgvsp: ENSP00000457120.1:p.Tyr14Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.40T>A
  hgvsp: ENSP00000457666.1:p.Tyr14Asn
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.40T>A
  hgvsp: ENSP00000444447.2:p.Tyr14Asn
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13650
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr14Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/15-52906034-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52906034
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52906034
    reference: chr 15
allele count: 1
allele frequency: 9.06043308870164e-6
allele num: 110370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.37G>T
  hgvsp: ENSP00000456725.1:p.Glu13Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.37G>T
  hgvsp: ENSP00000457120.1:p.Glu13Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.37G>T
  hgvsp: ENSP00000261844.7:p.Glu13Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.37G>T
  hgvsp: ENSP00000457666.1:p.Glu13Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.37G>T
  hgvsp: ENSP00000444447.2:p.Glu13Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.58G>T
  hgvsp: ENSP00000443598.2:p.Glu20Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-2060G>T
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.37G>T
  hgvsp: ENSP00000457402.1:p.Glu13Ter
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.37G>T
  hgvsp: ENSP00000455578.1:p.Glu13Ter
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu13Ter
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

15-52906041-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52906041
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52906041
    reference: chr 15
allele count: 2
allele frequency: 1.872203396176961e-5
allele num: 106826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.30A>G
  hgvsp: ENST00000534964.2:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.30A>G
  hgvsp: ENST00000561490.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.30A>G
  hgvsp: ENST00000568863.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.30A>G
  hgvsp: ENST00000261844.7:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.30A>G
  hgvsp: ENST00000561543.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.30A>G
  hgvsp: ENST00000566768.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-2067A>G
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.30A>G
  hgvsp: ENST00000562135.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.51A>G
  hgvsp: ENST00000546305.2:c.51A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39182
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu10Glu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

15-52906045-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52906045
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 52906045
    reference: chr 15
allele count: 1
allele frequency: 9.734633880419757e-6
allele num: 102726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000444447
  ensembl transcript: ENST00000534964
  gene symbol: FAM214A
  hgvsc: ENST00000534964.2:c.26A>G
  hgvsp: ENSP00000444447.2:p.Asp9Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457120
  ensembl transcript: ENST00000561543
  gene symbol: FAM214A
  hgvsc: ENST00000561543.1:c.26A>G
  hgvsp: ENSP00000457120.1:p.Asp9Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000261844
  ensembl transcript: ENST00000261844
  gene symbol: FAM214A
  hgvsc: ENST00000261844.7:c.26A>G
  hgvsp: ENSP00000261844.7:p.Asp9Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000456725
  ensembl transcript: ENST00000568863
  gene symbol: FAM214A
  hgvsc: ENST00000568863.1:c.26A>G
  hgvsp: ENSP00000456725.1:p.Asp9Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000443598
  ensembl transcript: ENST00000546305
  gene symbol: FAM214A
  hgvsc: ENST00000546305.2:c.47A>G
  hgvsp: ENSP00000443598.2:p.Asp16Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457666
  ensembl transcript: ENST00000562135
  gene symbol: FAM214A
  hgvsc: ENST00000562135.1:c.26A>G
  hgvsp: ENSP00000457666.1:p.Asp9Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000457402
  ensembl transcript: ENST00000561490
  gene symbol: FAM214A
  hgvsc: ENST00000561490.1:c.26A>G
  hgvsp: ENSP00000457402.1:p.Asp9Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000455578
  ensembl transcript: ENST00000566768
  gene symbol: FAM214A
  hgvsc: ENST00000566768.1:c.26A>G
  hgvsp: ENSP00000455578.1:p.Asp9Gly
  variant of: http://identifiers.org/hgnc/25609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047346
  ensembl protein: ENSP00000382153
  ensembl transcript: ENST00000399202
  gene symbol: FAM214A
  hgvsc: ENST00000399202.4:c.-63-2071A>G
  variant of: http://identifiers.org/hgnc/25609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Asp9Gly
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 7153
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 12

GenotypeQuality
all individuals: 13130
bin: 9.75e1
variant carriers: 10075

GenotypeQuality
all individuals: 1330
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 3

Latino
type: Population
allele count: 702
allele frequency: 6.077922077922078e-2
allele num: 11550
num of homozygotes: 34

East Asian
type: Population
allele count: 2
allele frequency: 2.326122354035822e-4
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 588
allele frequency: 8.892921960072596e-2
allele num: 6612
num of homozygotes: 21

South Asian
type: Population
allele count: 1246
allele frequency: 7.553346265761397e-2
allele num: 16496
num of homozygotes: 61

European (Non-Finnish)
type: Population
allele count: 6777
allele frequency: 1.017475903071795e-1
allele num: 66606
num of homozygotes: 379

Other
type: Population
allele count: 83
allele frequency: 9.263392857142858e-2
allele num: 896
num of homozygotes: 8

African
type: Population
allele count: 1319
allele frequency: 1.349774866966844e-1
allele num: 9772
num of homozygotes: 89

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.553e1

DP
type: SiteQuality
SIO_000300: 2.233004e6

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.63e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2819
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.348e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.534e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

DP
type: SiteQuality
SIO_000300: 1.780494e6

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

FS
type: SiteQuality
SIO_000300: 2.92e0

QD
type: SiteQuality
SIO_000300: 1.922e1

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3855
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 8794
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.327505625757314e-4
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.781079e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.321e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 1.371e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

GenotypeQuality
all individuals: 842
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.919e0

QD
type: SiteQuality
SIO_000300: 1.54e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.78109e6

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2352
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.999e0

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

QD
type: SiteQuality
SIO_000300: 1.047e1

DP
type: SiteQuality
SIO_000300: 1.781321e6

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 842
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.821e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.081e0

MQRankSum
type: SiteQuality
SIO_000300: -1.571e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.031e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
SIO_000300: 1.33e1

DP
type: SiteQuality
SIO_000300: 1.781471e6

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8810
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

FS
type: SiteQuality
SIO_000300: 2.343e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.675e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

DP
type: SiteQuality
SIO_000300: 1.781825e6

QD
type: SiteQuality
SIO_000300: 1.883e1

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3849
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.781863e6

MQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.417e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 9.5e0

GenotypeQuality
all individuals: 1617
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3853
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 39251
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.999820003599928e-5
allele num: 66668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.17e0

DP
type: SiteQuality
SIO_000300: 1.782226e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

QD
type: SiteQuality
SIO_000300: 1.171e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 39280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8811
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

FS
type: SiteQuality
SIO_000300: 2.122e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.21e0

QD
type: SiteQuality
SIO_000300: 1.366e1

DP
type: SiteQuality
SIO_000300: 1.781976e6

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeQuality
all individuals: 2813
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3850
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.783075e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.59e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.079e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

FS
type: SiteQuality
SIO_000300: 1.2683e1

VQSLOD
type: SiteQuality
SIO_000300: -1.815e0

MQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

GenotypeQuality
all individuals: 8823
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.697922599598309e-4
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.784507e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.302e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

GenotypeQuality
all individuals: 8827
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.602e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.481e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.373e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 2.616e0

DP
type: SiteQuality
SIO_000300: 1.783318e6

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.623e0

FS
type: SiteQuality
SIO_000300: 2.588e0

DP
type: SiteQuality
SIO_000300: 1.78339e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e0

QD
type: SiteQuality
SIO_000300: 1.617e1

MQRankSum
type: SiteQuality
SIO_000300: 8.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
all individuals: 39442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3837
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 2.777e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.88e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.74e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 1.783783e6

VQSLOD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4133
bin: 9.75e1
variant carriers: 538

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 520
allele frequency: 5.310457516339869e-2
allele num: 9792
num of homozygotes: 13

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.044325829658854e-3
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.995203836930456e-5
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.383604289173297e-3
allele num: 11564
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.75e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

FS
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

DP
type: SiteQuality
SIO_000300: 1.817319e6

QD
type: SiteQuality
SIO_000300: 1.335e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3634
bin: 9.75e1
variant carriers: 56

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
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variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 55
allele frequency: 8.242416976381729e-4
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.101e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

QD
type: SiteQuality
SIO_000300: 1.29e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.781817e6

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8875
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.61e-1

FS
type: SiteQuality
SIO_000300: 9.26e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

DP
type: SiteQuality
SIO_000300: 1.777818e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
SIO_000300: -2.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.57e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.279e0

DP
type: SiteQuality
SIO_000300: 1.778008e6

QD
type: SiteQuality
SIO_000300: 1.055e1

MQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

FS
type: SiteQuality
SIO_000300: 4.835e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.868e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 2369
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8876
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39731
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

DP
type: SiteQuality
SIO_000300: 1.778394e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.63e-2

FS
type: SiteQuality
SIO_000300: 1.742e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 8876
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3579
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2368
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

QD
type: SiteQuality
SIO_000300: 1.507e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.27e-1

FS
type: SiteQuality
SIO_000300: 5.127e0

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 1.778149e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.203e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3579
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8876
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.778136e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

FS
type: SiteQuality
SIO_000300: 3.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8873
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 1.778186e6

FS
type: SiteQuality
SIO_000300: 1.067e0

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.7e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

GenotypeQuality
all individuals: 2792
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8876
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.296e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

DP
type: SiteQuality
SIO_000300: 1.778106e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2788
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39709
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2363
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3574
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

VQSLOD
type: SiteQuality
SIO_000300: -2.804e0

QD
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 1.777804e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.824e0

MQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3575
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1608
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
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variant carriers: 0

GenotypeQuality
all individuals: 2785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39708
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.777665e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

QD
type: SiteQuality
SIO_000300: 1.478e1

VQSLOD
type: SiteQuality
SIO_000300: -4.607e-1

FS
type: SiteQuality
SIO_000300: 2.814e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.138e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

VQSLOD
type: SiteQuality
SIO_000300: -3.247e0

DP
type: SiteQuality
SIO_000300: 1.777593e6

QD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-1

FS
type: SiteQuality
SIO_000300: 5.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.75e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.553e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.68e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

DP
type: SiteQuality
SIO_000300: 1.777593e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.57e-1

FS
type: SiteQuality
SIO_000300: 3.476e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.739e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.67e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

QD
type: SiteQuality
SIO_000300: 1.04e1

VQSLOD
type: SiteQuality
SIO_000300: -8.723e-1

DP
type: SiteQuality
SIO_000300: 1.777449e6

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3572
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.93e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

FS
type: SiteQuality
SIO_000300: 3.214e0

QD
type: SiteQuality
SIO_000300: 1.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.892e0

DP
type: SiteQuality
SIO_000300: 1.777398e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.232142857142857e-3
allele num: 896
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.189e0

DP
type: SiteQuality
SIO_000300: 1.777298e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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BaseQRankSum
type: SiteQuality
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QD
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ClippingRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.41e-2

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 1.777283e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.326e1

FS
type: SiteQuality
SIO_000300: 2.147e0

DP
type: SiteQuality
SIO_000300: 1.776977e6

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 58

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 7.495802350683617e-4
allele num: 66704
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.188516084399862e-4
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021867974657674e-4
allele num: 9786
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.326e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39512
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.771541e6

QD
type: SiteQuality
SIO_000300: 1.536e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.856e0

FS
type: SiteQuality
SIO_000300: 1.322e0

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002462018855461e-5
allele num: 66612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 7.381e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

DP
type: SiteQuality
SIO_000300: 1.770653e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.011602392617753e-5
allele num: 66538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.068e1

VQSLOD
type: SiteQuality
SIO_000300: 3.85e-1

DP
type: SiteQuality
SIO_000300: 1.764708e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

FS
type: SiteQuality
SIO_000300: 2.217e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.456e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.370000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

FS
type: SiteQuality
SIO_000300: 1.641e0

DP
type: SiteQuality
SIO_000300: 1.757977e6

MQRankSum
type: SiteQuality
SIO_000300: -1.477e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 1977
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1019
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variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.574e1

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

DP
type: SiteQuality
SIO_000300: 1.697386e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.69e-1

FS
type: SiteQuality
SIO_000300: 3.018e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 531
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GenotypeQuality
all individuals: 1976
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510665296996797e-5
allele num: 66196
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.219e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.697099e6

MQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.625e0

VQSLOD
type: SiteQuality
SIO_000300: 4.15e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66196
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.15e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 6.219e0

QD
type: SiteQuality
SIO_000300: 1.192e1

MQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

DP
type: SiteQuality
SIO_000300: 1.697099e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.625e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.176470588235294e-4
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.818000000000001e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.690398e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.176470588235294e-4
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: 1.54e-1

DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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QD
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MQRankSum
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SIO_000300: -2.77e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.099420555047271e-5
allele num: 65580
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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FS
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MQ
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DP
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.184e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Latino
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allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.084967320261438e-5
allele num: 48960
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12312
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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QD
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DP
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MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

FS
type: SiteQuality
SIO_000300: 2.224e0

InbreedingCoeff
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SIO_000300: 5.3e-3

BaseQRankSum
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SIO_000300: 2.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12312
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48960
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 2.224e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 8.75893e5

InbreedingCoeff
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SIO_000300: 5.3e-3

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.244e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 49390
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.051529790660226e-5
allele num: 12420
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

VQSLOD
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.18346e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 2.75e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50074
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8020
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South Asian
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allele frequency: 3.168567807351077e-4
allele num: 12624
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African
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Other
type: Population
allele count: 0
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allele num: 700
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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African
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Latino
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European (Non-Finnish)
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allele frequency: 5.66722079492217e-5
allele num: 52936
num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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FS
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ClippingRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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African
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South Asian
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Latino
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QD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59544
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.00080064051241e-4
allele num: 9992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14418
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

DP
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MQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

VQSLOD
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InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.136e0

FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.512e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.765535646206634e-5
allele num: 62952
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10630
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.287e1

BaseQRankSum
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SIO_000300: -1.37e0

MQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

DP
type: SiteQuality
SIO_000300: 1.320129e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.416e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6454
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Latino
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allele frequency: 0.0e0
allele num: 10842
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East Asian
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allele count: 1
allele frequency: 1.20598166907863e-4
allele num: 8292
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.338624e6

BaseQRankSum
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SIO_000300: -2.224e0

VQSLOD
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SIO_000300: -2.367e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539456264047538e-5
allele num: 64958
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15734
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.404e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

QD
type: SiteQuality
SIO_000300: 8.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

DP
type: SiteQuality
SIO_000300: 1.364426e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 1
allele frequency: 1.180637544273908e-4
allele num: 8470
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Other
type: Population
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

BaseQRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 15886
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8464
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.528257480820369e-5
allele num: 65434
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DP
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 2.097315436241611e-4
allele num: 9536
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

ClippingRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
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VQSLOD
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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African
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allele frequency: 5.234505862646566e-4
allele num: 9552
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South Asian
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MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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ClippingRankSum
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MQ
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522765341860819e-5
allele num: 65670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15976
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.038e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

DP
type: SiteQuality
SIO_000300: 1.381725e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.397e0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 869
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515978412467406e-5
allele num: 65964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16040
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e0

FS
type: SiteQuality
SIO_000300: 2.0752e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.397792e6

VQSLOD
type: SiteQuality
SIO_000300: -3.624e0

MQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 1.269e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

GenotypeQuality
all individuals: 1182
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.203473945409429e-5
allele num: 16120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 6.2e-1

QD
type: SiteQuality
SIO_000300: 1.221e1

VQSLOD
type: SiteQuality
SIO_000300: 7.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

DP
type: SiteQuality
SIO_000300: 1.406987e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4453
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 206
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variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 885
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variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.76242509693338e-4
allele num: 11348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65986
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.38e-1

FS
type: SiteQuality
SIO_000300: 1.126e0

MQRankSum
type: SiteQuality
SIO_000300: -9.75e-1

DP
type: SiteQuality
SIO_000300: 1.408814e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 249
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GenotypeQuality
all individuals: 146
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GenotypeQuality
all individuals: 195
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.270378730875344e-5
allele num: 15948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 7.1e0

DP
type: SiteQuality
SIO_000300: 1.40082e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.315e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 5818
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 143
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GenotypeQuality
all individuals: 365
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GenotypeQuality
all individuals: 479
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GenotypeQuality
all individuals: 414
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GenotypeQuality
all individuals: 45344
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variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.582378631558959e-5
allele num: 63196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9244
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

DP
type: SiteQuality
SIO_000300: 1.345421e6

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

QD
type: SiteQuality
SIO_000300: 1.444e1

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 5841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 448
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.25e1
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GenotypeQuality
all individuals: 204
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.664793549963352e-4
allele num: 8186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63182
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.225e-1

DP
type: SiteQuality
SIO_000300: 1.345565e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.463e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 709
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GenotypeQuality
all individuals: 703
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
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GenotypeQuality
all individuals: 1162
bin: 5.25e1
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GenotypeQuality
all individuals: 204
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 174
bin: 4.25e1
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GenotypeQuality
all individuals: 3504
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 8.855435023245517e-4
allele num: 9034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.630044989241703e-5
allele num: 61348
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

DP
type: SiteQuality
SIO_000300: 1.300389e6

FS
type: SiteQuality
SIO_000300: 2.661e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
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GenotypeQuality
all individuals: 3489
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GenotypeQuality
all individuals: 12
bin: 1.25e1
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GenotypeQuality
all individuals: 201
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variant carriers: 4

GenotypeQuality
all individuals: 81
bin: 7.5e0
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GenotypeQuality
all individuals: 41280
bin: 6.25e1
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GenotypeQuality
all individuals: 1061
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
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GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8678
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.520392527630163e-5
allele num: 61346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.298232e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 2.962e0

QD
type: SiteQuality
SIO_000300: 1.143e1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

GenotypeQuality
all individuals: 407
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 704
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632173402102239e-5
allele num: 61268
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

DP
type: SiteQuality
SIO_000300: 1.298012e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.798e0

FS
type: SiteQuality
SIO_000300: 8.821e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.035e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11834
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.610966057441253e-4
allele num: 7660
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.21e-1

FS
type: SiteQuality
SIO_000300: 4.321e0

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

QD
type: SiteQuality
SIO_000300: 1.187e1

DP
type: SiteQuality
SIO_000300: 1.248471e6