17-970419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970419
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970419
    reference: chr 17
allele count: 5
allele frequency: 4.23707269121909e-5
allele num: 118006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.435C>T
  hgvsp: ENST00000571945.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.79C>T
  hgvsp: ENST00000574544.1:c.79C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.942C>T
  hgvsp: ENST00000544583.2:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.512C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.969C>T
  hgvsp: ENST00000291107.2:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.942C>T
  hgvsp: ENST00000574437.1:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1080C>T
  hgvsp: ENST00000302538.5:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.426C>T
  hgvsp: ENST00000536794.2:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14937
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro360Pro
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-970421-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970421
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970421
    reference: chr 17
allele count: 1
allele frequency: 8.483059330516958e-6
allele num: 117882
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.940C>A
  hgvsp: ENSP00000461565.1:p.Pro314Thr
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.967C>A
  hgvsp: ENSP00000291107.2:p.Pro323Thr
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.433C>A
  hgvsp: ENSP00000459118.1:p.Pro145Thr
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.510C>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.424C>A
  hgvsp: ENSP00000437429.2:p.Pro142Thr
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.77C>A
  hgvsp: ENSP00000458294.1:p.Pro27Thr
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.940C>A
  hgvsp: ENSP00000442048.2:p.Pro314Thr
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1078C>A
  hgvsp: ENSP00000303909.5:p.Pro360Thr
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro360Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-970425-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970425
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970425
    reference: chr 17
allele count: 2
allele frequency: 1.703200313388858e-5
allele num: 117426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.429A>G
  hgvsp: ENST00000571945.1:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.73A>G
  hgvsp: ENST00000574544.1:c.73A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.936A>G
  hgvsp: ENST00000544583.2:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.506A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.936A>G
  hgvsp: ENST00000574437.1:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.963A>G
  hgvsp: ENST00000291107.2:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1074A>G
  hgvsp: ENST00000302538.5:c.1074A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.420A>G
  hgvsp: ENST00000536794.2:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro358Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

17-970432-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970432
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970432
    reference: chr 17
allele count: 1
allele frequency: 8.649172274213358e-6
allele num: 115618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.413T>C
  hgvsp: ENSP00000437429.2:p.Val138Ala
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.929T>C
  hgvsp: ENSP00000442048.2:p.Val310Ala
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.929T>C
  hgvsp: ENSP00000461565.1:p.Val310Ala
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.422T>C
  hgvsp: ENSP00000459118.1:p.Val141Ala
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.956T>C
  hgvsp: ENSP00000291107.2:p.Val319Ala
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1067T>C
  hgvsp: ENSP00000303909.5:p.Val356Ala
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.66T>C
  hgvsp: ENSP00000458294.1:p.Val23Ala
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.499T>C
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28053
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5376
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val356Ala
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-970433-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970433
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970433
    reference: chr 17
allele count: 1
allele frequency: 8.706402688537151e-6
allele num: 114858
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.928G>C
  hgvsp: ENSP00000461565.1:p.Val310Leu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1066G>C
  hgvsp: ENSP00000303909.5:p.Val356Leu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.498G>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.421G>C
  hgvsp: ENSP00000459118.1:p.Val141Leu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.412G>C
  hgvsp: ENSP00000437429.2:p.Val138Leu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.955G>C
  hgvsp: ENSP00000291107.2:p.Val319Leu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.928G>C
  hgvsp: ENSP00000442048.2:p.Val310Leu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.65G>C
  hgvsp: ENSP00000458294.1:p.Val23Leu
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27317
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val356Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

17-970440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970440
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970440
    reference: chr 17
allele count: 10
allele frequency: 8.767007995511292e-5
allele num: 114064
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1059C>T
  hgvsp: ENST00000302538.5:c.1059C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.405C>T
  hgvsp: ENST00000536794.2:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.491C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.921C>T
  hgvsp: ENST00000574437.1:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.58C>T
  hgvsp: ENST00000574544.1:c.58C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.921C>T
  hgvsp: ENST00000544583.2:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.948C>T
  hgvsp: ENST00000291107.2:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.414C>T
  hgvsp: ENST00000571945.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14759
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26386
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7049
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala353Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

17-970449-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970449
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970449
    reference: chr 17
allele count: 4
allele frequency: 3.564617605646354e-5
allele num: 112214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.49C>A
  hgvsp: ENST00000574544.1:c.49C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.396C>A
  hgvsp: ENST00000536794.2:c.396C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.912C>A
  hgvsp: ENST00000574437.1:c.912C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.912C>A
  hgvsp: ENST00000544583.2:c.912C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1050C>A
  hgvsp: ENST00000302538.5:c.1050C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.482C>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.405C>A
  hgvsp: ENST00000571945.1:c.405C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.939C>A
  hgvsp: ENST00000291107.2:c.939C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15019
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile350Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

17-970472-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970472
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970472
    reference: chr 17
allele count: 1
allele frequency: 9.584235848875769e-6
allele num: 104338
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1027C>G
  hgvsp: ENSP00000303909.5:p.Gln343Glu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.916C>G
  hgvsp: ENSP00000291107.2:p.Gln306Glu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.889C>G
  hgvsp: ENSP00000442048.2:p.Gln297Glu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.889C>G
  hgvsp: ENSP00000461565.1:p.Gln297Glu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.26C>G
  hgvsp: ENSP00000458294.1:p.Gln10Glu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.382C>G
  hgvsp: ENSP00000459118.1:p.Gln128Glu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.373C>G
  hgvsp: ENSP00000437429.2:p.Gln125Glu
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.459C>G
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln343Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-970476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970476
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970476
    reference: chr 17
allele count: 1
allele frequency: 9.778229749286189e-6
allele num: 102268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.369C>T
  hgvsp: ENST00000536794.2:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.378C>T
  hgvsp: ENST00000571945.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.885C>T
  hgvsp: ENST00000544583.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.912C>T
  hgvsp: ENST00000291107.2:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1023C>T
  hgvsp: ENST00000302538.5:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.22C>T
  hgvsp: ENST00000574544.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.455C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.885C>T
  hgvsp: ENST00000574437.1:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17906
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25720
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His341His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-970480-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970480
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970480
    reference: chr 17
allele count: 1
allele frequency: 9.948466941244355e-6
allele num: 100518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.18A>G
  hgvsp: ENSP00000458294.1:p.Lys7Arg
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.374A>G
  hgvsp: ENSP00000459118.1:p.Lys125Arg
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.881A>G
  hgvsp: ENSP00000461565.1:p.Lys294Arg
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.881A>G
  hgvsp: ENSP00000442048.2:p.Lys294Arg
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.908A>G
  hgvsp: ENSP00000291107.2:p.Lys303Arg
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.365A>G
  hgvsp: ENSP00000437429.2:p.Lys122Arg
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1019A>G
  hgvsp: ENSP00000303909.5:p.Lys340Arg
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.451A>G
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16409
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys340Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-970487-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970487
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970487
    reference: chr 17
allele count: 1
allele frequency: 1.04604698843072e-5
allele num: 95598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.879-5T>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.16-5T>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.363-5T>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.879-5T>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1017-5T>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.449-5T>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.372-5T>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.906-5T>G
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1017-5T>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

17-970490-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970490
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970490
    reference: chr 17
allele count: 1
allele frequency: 1.06965599863084e-5
allele num: 93488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.879-8G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.449-8G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.906-8G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.879-8G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.372-8G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1017-8G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.363-8G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.16-8G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20868
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1017-8G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

17-970491-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970491
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970491
    reference: chr 17
allele count: 1
allele frequency: 1.109139307897072e-5
allele num: 90160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.879-9C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.879-9C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.449-9C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.16-9C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.906-9C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1017-9C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.372-9C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.363-9C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9095
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20961
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

17-970501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970501
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970501
    reference: chr 17
allele count: 1
allele frequency: 1.126582848902708e-5
allele num: 88764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.879-19C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.879-19C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.449-19C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1017-19C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.363-19C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.16-19C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.372-19C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.906-19C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4696
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-970501-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970501
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970501
    reference: chr 17
allele count: 4
allele frequency: 4.506331395610833e-5
allele num: 88764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.363-19C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.449-19C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.879-19C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.906-19C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.879-19C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.16-19C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1017-19C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.372-19C>G
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6806
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6061
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

17-970508-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970508
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970508
    reference: chr 17
allele count: 4
allele frequency: 4.759524999405059e-5
allele num: 84042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.879-26C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.449-26C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.879-26C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1017-26C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.906-26C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.363-26C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.372-26C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.16-26C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25418
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22579
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3883
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

17-970513-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970513
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970513
    reference: chr 17
allele count: 1
allele frequency: 1.186352204242395e-5
allele num: 84292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.906-31T>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.372-31T>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.363-31T>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.16-31T>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.879-31T>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.449-31T>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1017-31T>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.879-31T>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24038
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5690
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

17-970517-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970517
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970517
    reference: chr 17
allele count: 72
allele frequency: 8.814455707360071e-4
allele num: 81684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.16-35C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.906-35C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.879-35C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1017-35C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.449-35C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.363-35C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.879-35C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.372-35C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9413
  bin: 1.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13166
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24847
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 9.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ

17-970518-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970518
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970518
    reference: chr 17
allele count: 3
allele frequency: 3.710575139146567e-5
allele num: 80850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.372-36C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.16-36C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1017-36C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.906-36C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.449-36C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.879-36C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.879-36C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.363-36C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24678
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9646
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

17-970530-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 970530
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 970530
    reference: chr 17
allele count: 5
allele frequency: 6.93442804837457e-5
allele num: 72104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.363-48A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.879-48A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.906-48A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.16-48A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.449-48A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.879-48A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1017-48A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.372-48A>G
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9986
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21560
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7870
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3410
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4831
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6419
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-973164-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973164
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973164
    reference: chr 17
allele count: 5
allele frequency: 5.25839766106472e-5
allele num: 95086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+45G>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+45G>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+45G>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+45G>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+45G>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+45G>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+45G>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+45G>C
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9660
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17555
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13483
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9277
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6841
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3563
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

17-973165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973165
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973165
    reference: chr 17
allele count: 5
allele frequency: 5.339712509878468e-5
allele num: 93638
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+44G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14432
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17221
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6646
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

17-973166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973166
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973166
    reference: chr 17
allele count: 33
allele frequency: 3.482702577199907e-4
allele num: 94754
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+43C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+43C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+43C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+43C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+43C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+43C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+43C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+43C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16722
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15857
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9724
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4730
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5587
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12812
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-973168-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973168
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973167
    reference: chr 17
allele count: 1
allele frequency: 1.043514557028071e-5
allele num: 95830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+40delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+40delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+40delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+40delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+40delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+40delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+40delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+40delG
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6358
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4666
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14659
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: AC
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

17-973174-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973174
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973174
    reference: chr 17
allele count: 5
allele frequency: 5.129046817939354e-5
allele num: 97484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+35A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+35A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+35A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+35A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+35A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+35A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+35A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+35A>G
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22102
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5356
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8722
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-973174-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973174
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973173
    reference: chr 17
allele count: 1
allele frequency: 1.025809363587871e-5
allele num: 97484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+34delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+34delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+34delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+34delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+34delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+34delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+34delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+34delG
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8722
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3938
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4437
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: TC
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

17-973176-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973176
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973176
    reference: chr 17
allele count: 1
allele frequency: 9.859793733115103e-6
allele num: 101422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+33G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+33G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+33G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+33G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+33G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+33G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+33G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+33G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

17-973179-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973179
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973179
    reference: chr 17
allele count: 1
allele frequency: 9.68729414499942e-6
allele num: 103228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+30G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+30G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+30G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+30G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+30G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+30G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+30G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+30G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8962
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26120
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3810
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5839
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

17-973180-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973180
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973180
    reference: chr 17
allele count: 15
allele frequency: 1.500180021602592e-4
allele num: 99988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+29C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25252
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9951
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-973180-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973180
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973180
    reference: chr 17
allele count: 18
allele frequency: 1.800216025923111e-4
allele num: 99988
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+29C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+29C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+29C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+29C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+29C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+29C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+29C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+29C>G
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9951
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25252
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

17-973184-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973184
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973184
    reference: chr 17
allele count: 10
allele frequency: 9.165062780680047e-5
allele num: 109110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+25G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+25G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+25G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+25G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+25G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+25G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+25G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+25G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11446
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5554
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29371
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

17-973185-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973185
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973185
    reference: chr 17
allele count: 6
allele frequency: 5.469960798614277e-5
allele num: 109690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+24C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11829
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29641
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

17-973186-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973186
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973186
    reference: chr 17
allele count: 1
allele frequency: 8.991026955098812e-6
allele num: 111222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+23A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+23A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+23A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+23A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+23A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+23A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+23A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+23A>G
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7476
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-973206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973206
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973206
    reference: chr 17
allele count: 1
allele frequency: 8.452799567216662e-6
allele num: 118304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.905+3G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.362+3G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.878+3G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.878+3G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.15+3G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.371+3G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.448+3G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1016+3G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1016+3G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

17-973214-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973214
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973214
    reference: chr 17
allele count: 1
allele frequency: 8.396587626788473e-6
allele num: 119096
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.443T>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.357T>C
  hgvsp: ENST00000536794.2:c.357T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.873T>C
  hgvsp: ENST00000544583.2:c.873T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1011T>C
  hgvsp: ENST00000302538.5:c.1011T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.873T>C
  hgvsp: ENST00000574437.1:c.873T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.366T>C
  hgvsp: ENST00000571945.1:c.366T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.10T>C
  hgvsp: ENST00000574544.1:c.10T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.900T>C
  hgvsp: ENST00000291107.2:c.900T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37331
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser337Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

17-973218-GTCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973218
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973215
    reference: chr 17
allele count: 1
allele frequency: 8.376331836762046e-6
allele num: 119384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.866_868delAGA
  hgvsp: ENSP00000461565.1:p.Lys289del
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.1004_1006delAGA
  hgvsp: ENSP00000303909.5:p.Lys335del
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.436_438delAGA
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.350_352delAGA
  hgvsp: ENSP00000437429.2:p.Lys117del
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.359_361delAGA
  hgvsp: ENSP00000459118.1:p.Lys120del
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.893_895delAGA
  hgvsp: ENSP00000291107.2:p.Lys298del
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000458294
  ensembl transcript: ENST00000574544
  gene symbol: ABR
  hgvsc: ENST00000574544.1:c.3_5delAGA
  hgvsp: ENSP00000458294.1:p.Lys2del
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.866_868delAGA
  hgvsp: ENSP00000442048.2:p.Lys289del
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys335del
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: GTCT
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

17-973226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973226
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973226
    reference: chr 17
allele count: 1
allele frequency: 8.350870160670742e-6
allele num: 119748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.345G>A
  hgvsp: ENST00000536794.2:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.861G>A
  hgvsp: ENST00000544583.2:c.861G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.354G>A
  hgvsp: ENST00000571945.1:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.888G>A
  hgvsp: ENST00000291107.2:c.888G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.861G>A
  hgvsp: ENST00000574437.1:c.861G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.999G>A
  hgvsp: ENST00000302538.5:c.999G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.431G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3410
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu333Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

17-973250-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973250
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973250
    reference: chr 17
allele count: 1
allele frequency: 8.30813199960121e-6
allele num: 120364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.837A>C
  hgvsp: ENST00000574437.1:c.837A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.321A>C
  hgvsp: ENST00000536794.2:c.321A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.330A>C
  hgvsp: ENST00000571945.1:c.330A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.837A>C
  hgvsp: ENST00000544583.2:c.837A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.864A>C
  hgvsp: ENST00000291107.2:c.864A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.407A>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.975A>C
  hgvsp: ENST00000302538.5:c.975A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6918
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr325Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

17-973253-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973253
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973253
    reference: chr 17
allele count: 1
allele frequency: 8.306475728477921e-6
allele num: 120388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.861T>C
  hgvsp: ENST00000291107.2:c.861T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.318T>C
  hgvsp: ENST00000536794.2:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.327T>C
  hgvsp: ENST00000571945.1:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.834T>C
  hgvsp: ENST00000544583.2:c.834T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.404T>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.834T>C
  hgvsp: ENST00000574437.1:c.834T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.972T>C
  hgvsp: ENST00000302538.5:c.972T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37685
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe324Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-973264-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973264
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973264
    reference: chr 17
allele count: 1
allele frequency: 8.301097405076952e-6
allele num: 120466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.393G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.823G>A
  hgvsp: ENSP00000442048.2:p.Val275Ile
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.961G>A
  hgvsp: ENSP00000303909.5:p.Val321Ile
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.307G>A
  hgvsp: ENSP00000437429.2:p.Val103Ile
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.850G>A
  hgvsp: ENSP00000291107.2:p.Val284Ile
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.316G>A
  hgvsp: ENSP00000459118.1:p.Val106Ile
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.823G>A
  hgvsp: ENSP00000461565.1:p.Val275Ile
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3387
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8810
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val321Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-973265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973265
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973265
    reference: chr 17
allele count: 1
allele frequency: 8.299995020002988e-6
allele num: 120482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.306C>T
  hgvsp: ENST00000536794.2:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.960C>T
  hgvsp: ENST00000302538.5:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.849C>T
  hgvsp: ENST00000291107.2:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.822C>T
  hgvsp: ENST00000544583.2:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.822C>T
  hgvsp: ENST00000574437.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.392C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.315C>T
  hgvsp: ENST00000571945.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8816
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His320His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

17-973289-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973289
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973289
    reference: chr 17
allele count: 1
allele frequency: 8.295863682367972e-6
allele num: 120542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.798A>T
  hgvsp: ENST00000544583.2:c.798A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.936A>T
  hgvsp: ENST00000302538.5:c.936A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.368A>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.549A>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.282A>T
  hgvsp: ENST00000536794.2:c.282A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.291A>T
  hgvsp: ENST00000571945.1:c.291A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.825A>T
  hgvsp: ENST00000291107.2:c.825A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.798A>T
  hgvsp: ENST00000574437.1:c.798A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser312Ser
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

17-973310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973310
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973310
    reference: chr 17
allele count: 1
allele frequency: 8.304268393954492e-6
allele num: 120420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.270C>T
  hgvsp: ENST00000571945.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.777C>T
  hgvsp: ENST00000574437.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.347C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.804C>T
  hgvsp: ENST00000291107.2:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.777C>T
  hgvsp: ENST00000544583.2:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.915C>T
  hgvsp: ENST00000302538.5:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.261C>T
  hgvsp: ENST00000536794.2:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.528C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37471
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp305Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

17-973321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973321
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973321
    reference: chr 17
allele count: 1
allele frequency: 8.318913882603488e-6
allele num: 120208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.250C>T
  hgvsp: ENST00000536794.2:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.766C>T
  hgvsp: ENST00000574437.1:c.766C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.793C>T
  hgvsp: ENST00000291107.2:c.793C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.766C>T
  hgvsp: ENST00000544583.2:c.766C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.259C>T
  hgvsp: ENST00000571945.1:c.259C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.904C>T
  hgvsp: ENST00000302538.5:c.904C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.336C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.517C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3420
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu302Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

17-973328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973328
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973328
    reference: chr 17
allele count: 1
allele frequency: 8.332222370350619e-6
allele num: 120016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.243G>A
  hgvsp: ENST00000536794.2:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.897G>A
  hgvsp: ENST00000302538.5:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.759G>A
  hgvsp: ENST00000544583.2:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.786G>A
  hgvsp: ENST00000291107.2:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.252G>A
  hgvsp: ENST00000571945.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.329G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.510G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.759G>A
  hgvsp: ENST00000574437.1:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16259
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
hgvs: c.897G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

17-973336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973336
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973336
    reference: chr 17
allele count: 1
allele frequency: 8.346688034188035e-6
allele num: 119808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-6C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-6C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-6C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-6C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-6C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-6C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-6C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-6C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15947
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: c.895-6C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-973340-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973340
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973340
    reference: chr 17
allele count: 1
allele frequency: 8.351428094204109e-6
allele num: 119740
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-10T>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-10T>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-10T>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-10T>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-10T>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-10T>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-10T>C
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-10T>C
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-973341-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973341
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973341
    reference: chr 17
allele count: 4
allele frequency: 3.342078438580953e-5
allele num: 119686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-11A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-11A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-11A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-11A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-11A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-11A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-11A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-11A>G
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ

17-973343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973343
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973343
    reference: chr 17
allele count: 1
allele frequency: 8.358408559010364e-6
allele num: 119640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-13C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-13C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-13C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-13C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-13C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-13C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-13C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-13C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-973347-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973347
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973346
    reference: chr 17
allele count: 1
allele frequency: 8.389684044498884e-6
allele num: 119194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-18delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-18delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-18delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-18delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-18delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-18delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-18delG
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-18delG
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3315
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8106
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: AC
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

17-973359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973359
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973359
    reference: chr 17
allele count: 1
allele frequency: 8.38841727342885e-6
allele num: 119212
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-29C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-29C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27788
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8065
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

17-973364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973364
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973364
    reference: chr 17
allele count: 2
allele frequency: 1.678274733573886e-5
allele num: 119170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-34C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-34C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-34C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-34C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-34C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-34C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-34C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-34C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26801
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

17-973369-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973369
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973369
    reference: chr 17
allele count: 418
allele frequency: 3.519881435572697e-3
allele num: 118754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-39C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-39C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-39C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-39C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-39C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-39C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-39C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-39C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6479
  bin: 1.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 13836
  bin: 2.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 25011
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 3.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25963
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7617
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 6
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-973374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973374
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973374
    reference: chr 17
allele count: 1
allele frequency: 8.464533604198409e-6
allele num: 118140
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-44G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-44G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25383
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2629
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24110
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

17-973375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973375
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973375
    reference: chr 17
allele count: 5
allele frequency: 4.220905299768694e-5
allele num: 118458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-45C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-45C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-45C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-45C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-45C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-45C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-45C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-45C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13401
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25414
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7508
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24670
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

17-973378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973378
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973378
    reference: chr 17
allele count: 45
allele frequency: 3.807879772542648e-4
allele num: 118176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-48G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-48G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-48G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-48G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-48G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-48G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-48G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-48G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13157
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 25678
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

17-973379-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 973379
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 973379
    reference: chr 17
allele count: 1
allele frequency: 8.463673911571535e-6
allele num: 118152
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.895-49C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.250-49C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.757-49C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.784-49C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.327-49C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.241-49C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.757-49C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.508-49C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7475
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-975804-C-CCTGACGCCCGTGTGTGAGAGAAGGGGACGAGGGAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975804
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975839
    reference: chr 17
allele count: 9
allele frequency: 1.165984349898948e-4
allele num: 77188
alternate allele: CCTGACGCCCGTGTGTGAGAGAAGGGGACGAGGGAT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12947
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17437
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9787
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7778
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-975815-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975815
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975815
    reference: chr 17
allele count: 1
allele frequency: 1.032844453625284e-5
allele num: 96820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507+39A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249+39A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783+39A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756+39A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240+39A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756+39A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326+39A>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894+39A>G
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9092
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7232
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11318
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12110
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS

17-975821-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975821
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975821
    reference: chr 17
allele count: 1
allele frequency: 1.027411334401841e-5
allele num: 97332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326+33A>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240+33A>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249+33A>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783+33A>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756+33A>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756+33A>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507+33A>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894+33A>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4781
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6965
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

17-975823-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975823
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975823
    reference: chr 17
allele count: 4
allele frequency: 4.102900750830838e-5
allele num: 97492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326+31C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507+31C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894+31C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756+31C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783+31C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756+31C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240+31C>G
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249+31C>G
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10639
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17081
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6891
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-975830-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975830
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975830
    reference: chr 17
allele count: 11770
allele frequency: 1.171680570211241e-1
allele num: 100454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326+24C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756+24C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 2.75e1
  variant carriers: 952
genotype depth: GenotypeDepth
  all individuals: 17276
  bin: 2.25e1
  variant carriers: 2197
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 7.5e0
  variant carriers: 890
genotype depth: GenotypeDepth
  all individuals: 8053
  bin: 1.75e1
  variant carriers: 3425
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 325
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 15160
  bin: 1.25e1
  variant carriers: 3044
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.5e0
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.25e1
  variant carriers: 399
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 7.5e0
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 1.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 4.25e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 5.75e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 9.25e1
  variant carriers: 225
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 2.5e0
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 3.75e1
  variant carriers: 145
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 1.75e1
  variant carriers: 89
num of homozygotes: 702
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

17-975833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975833
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975833
    reference: chr 17
allele count: 1
allele frequency: 9.853964249817701e-6
allele num: 101482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326+21G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756+21G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240+21G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249+21G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507+21G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894+21G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783+21G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756+21G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4430
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5888
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

17-975834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975834
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975834
    reference: chr 17
allele count: 8
allele frequency: 7.865809293453681e-5
allele num: 101706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326+20C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894+20C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756+20C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756+20C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783+20C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249+20C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240+20C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507+20C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18839
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4198
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5771
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

17-975838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975838
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975838
    reference: chr 17
allele count: 1
allele frequency: 9.783012776614686e-6
allele num: 102218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326+16G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783+16G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894+16G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507+16G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249+16G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240+16G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756+16G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756+16G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19806
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5481
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3943
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

17-975839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975839
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975839
    reference: chr 17
allele count: 188
allele frequency: 1.834361095933182e-3
allele num: 102488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326+15C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507+15C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240+15C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756+15C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783+15C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249+15C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894+15C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756+15C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20319
  bin: 2.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6059
  bin: 1.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 13602
  bin: 1.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21785
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.25e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

17-975840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975840
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975840
    reference: chr 17
allele count: 1
allele frequency: 9.71534052268532e-6
allele num: 102930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249+14C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240+14C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326+14C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783+14C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756+14C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894+14C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507+14C>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756+14C>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13450
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-975840-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975840
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975840
    reference: chr 17
allele count: 1
allele frequency: 9.71534052268532e-6
allele num: 102930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756+14C>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756+14C>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783+14C>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240+14C>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249+14C>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326+14C>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894+14C>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507+14C>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5318
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-975842-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975842
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975842
    reference: chr 17
allele count: 2
allele frequency: 1.937684079987599e-5
allele num: 103216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507+12G>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783+12G>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894+12G>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326+12G>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756+12G>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249+12G>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240+12G>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756+12G>T
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2894
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/17-975854-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975854
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975854
    reference: chr 17
allele count: 1
allele frequency: 9.59232613908873e-6
allele num: 104250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.756G>T
  hgvsp: ENSP00000461565.1:p.Glu252Asp
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.783G>T
  hgvsp: ENSP00000291107.2:p.Glu261Asp
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.326G>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.894G>T
  hgvsp: ENSP00000303909.5:p.Glu298Asp
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.507G>T
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.240G>T
  hgvsp: ENSP00000437429.2:p.Glu80Asp
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.249G>T
  hgvsp: ENSP00000459118.1:p.Glu83Asp
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.756G>T
  hgvsp: ENSP00000442048.2:p.Glu252Asp
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12270
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4033
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10785
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu298Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

17-975866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 975866
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 975866
    reference: chr 17
allele count: 13
allele frequency: 1.232905293905654e-4
allele num: 105442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000437429
  ensembl transcript: ENST00000536794
  gene symbol: ABR
  hgvsc: ENST00000536794.2:c.228G>A
  hgvsp: ENST00000536794.2:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000291107
  ensembl transcript: ENST00000291107
  gene symbol: ABR
  hgvsc: ENST00000291107.2:c.771G>A
  hgvsp: ENST00000291107.2:c.771G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000461565
  ensembl transcript: ENST00000574437
  gene symbol: ABR
  hgvsc: ENST00000574437.1:c.744G>A
  hgvsp: ENST00000574437.1:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000442048
  ensembl transcript: ENST00000544583
  gene symbol: ABR
  hgvsc: ENST00000544583.2:c.744G>A
  hgvsp: ENST00000544583.2:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000459118
  ensembl transcript: ENST00000571945
  gene symbol: ABR
  hgvsc: ENST00000571945.1:c.237G>A
  hgvsp: ENST00000571945.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000576964
  gene symbol: ABR
  hgvsc: ENST00000576964.1:n.314G>A
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159842
  ensembl protein: ENSP00000303909
  ensembl transcript: ENST00000302538
  gene symbol: ABR
  hgvsc: ENST00000302538.5:c.882G>A
  hgvsp: ENST00000302538.5:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/81
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159842
  ensembl transcript: ENST00000573667
  gene symbol: ABR
  hgvsc: ENST00000573667.1:n.495G>A
  variant of: http://identifiers.org/hgnc/81
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20830
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11363
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.25e1
  variant carriers: 2
hgvs: p.Thr294Thr
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 8486
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39789
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.405329233922624e-5
allele num: 15612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.119202056051891e-5
allele num: 65368
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.865e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.662e0

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 3.285e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.275e1

DP
type: SiteQuality
SIO_000300: 1.592491e6

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40151
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530362389813908e-5
allele num: 65344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15534
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.889e1

VQSLOD
type: SiteQuality
SIO_000300: -1.772e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 1.0646e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.042e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.587145e6

MQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

QD
type: SiteQuality
SIO_000300: 4.73e0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1847
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.069838833461244e-5
allele num: 65150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15342
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.744e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.576642e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1882
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.888001102080176e-5
allele num: 14518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.606e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.61e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.536503e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556759449529859e-5
allele num: 64236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 5.42e0

FS
type: SiteQuality
SIO_000300: 4.222e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.939e0

MQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: -2.038e0

DP
type: SiteQuality
SIO_000300: 1.516082e6

MQ
type: SiteQuality
SIO_000300: 5.905e1

GenotypeQuality
all individuals: 689
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 134
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GenotypeQuality
all individuals: 1520
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.563721657544957e-4
allele num: 63950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.493978e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 4.197e0

QD
type: SiteQuality
SIO_000300: 1.276e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

GenotypeQuality
all individuals: 6656
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 96
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GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5806
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.056234718826406e-4
allele num: 13088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63268
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.296e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.452867e6

FS
type: SiteQuality
SIO_000300: 1.639e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 7.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.670508836991748e-5
allele num: 59862
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.289999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -6.407e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
SIO_000300: 1.871e0

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

MQ
type: SiteQuality
SIO_000300: 5.361e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 1.281616e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 55
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.706853038245001e-5
allele num: 10302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.026e0

DP
type: SiteQuality
SIO_000300: 1.232741e6

FS
type: SiteQuality
SIO_000300: 1.2995e1

VQSLOD
type: SiteQuality
SIO_000300: -1.874e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.720992668571232e-5
allele num: 58106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQ
type: SiteQuality
SIO_000300: 5.92e1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.405e1

DP
type: SiteQuality
SIO_000300: 1.186859e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.794687724335966e-5
allele num: 55720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.923e1

FS
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.323e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.95e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 269
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4648
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.557632398753894e-3
allele num: 642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7522
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

ReadPosRankSum
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SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.03365e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.883310105842028e-5
allele num: 53098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.049e0

MQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.813e1

QD
type: SiteQuality
SIO_000300: 1.183e1

ReadPosRankSum
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SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 9.77336e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

FS
type: SiteQuality
SIO_000300: 1.0193e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.889e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.383508577753182e-4
allele num: 7228
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.593e0

QD
type: SiteQuality
SIO_000300: 9.34e0

DP
type: SiteQuality
SIO_000300: 9.05601e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52536
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.534034311012728e-4
allele num: 7228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

FS
type: SiteQuality
SIO_000300: 3.593e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 9.05601e5

QD
type: SiteQuality
SIO_000300: 9.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 147
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.000240009600384e-5
allele num: 49998
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.461988304093567e-4
allele num: 6840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7482
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

QD
type: SiteQuality
SIO_000300: 1.014e1

FS
type: SiteQuality
SIO_000300: 2.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.969e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.777e1

DP
type: SiteQuality
SIO_000300: 8.24105e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.449e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.994813484939158e-5
allele num: 50130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7522
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

DP
type: SiteQuality
SIO_000300: 8.1777e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

MQ
type: SiteQuality
SIO_000300: 5.836e1

QD
type: SiteQuality
SIO_000300: 5.6e0

VQSLOD
type: SiteQuality
SIO_000300: -4.437e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 116
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variant carriers: 1

African
type: Population
allele count: 66
allele frequency: 8.940666486047142e-3
allele num: 7382
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4050
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.216251745953496e-5
allele num: 48684
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.565418163160595e-4
allele num: 7796
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 7.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

DP
type: SiteQuality
SIO_000300: 7.89037e5

MQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -6.56e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

MQ
type: SiteQuality
SIO_000300: 5.895e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48230
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7300
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.563431700638881e-4
allele num: 6574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4012
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

MQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.592e0

FS
type: SiteQuality
SIO_000300: 5.01e0

VQSLOD
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SIO_000300: -1.065e0

DP
type: SiteQuality
SIO_000300: 7.82388e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 506
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South Asian
type: Population
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allele frequency: 0.0e0
allele num: 5828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.156336725254394e-4
allele num: 43240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

FS
type: SiteQuality
SIO_000300: 1.749e0

QD
type: SiteQuality
SIO_000300: 1.241e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

DP
type: SiteQuality
SIO_000300: 7.38391e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

MQ
type: SiteQuality
SIO_000300: 5.566e1

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.784e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2936
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.75206363499925e-5
allele num: 53304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.224066390041493e-4
allele num: 4820
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.506e1

FS
type: SiteQuality
SIO_000300: 3.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

DP
type: SiteQuality
SIO_000300: 9.86901e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

GenotypeQuality
all individuals: 1720
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4756
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9295
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 935
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5833
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.04602510460251e-4
allele num: 9560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.718868950516585e-4
allele num: 11034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.900707063027446e-5
allele num: 52612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

FS
type: SiteQuality
SIO_000300: 7.303e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

MQ
type: SiteQuality
SIO_000300: 5.82e1

QD
type: SiteQuality
SIO_000300: 1.124e1

DP
type: SiteQuality
SIO_000300: 1.002425e6

GenotypeQuality
all individuals: 6508
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1018
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1503
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2608
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9431
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3689
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1539
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 447
bin: 5.75e1
variant carriers: 1

African
type: Population
allele count: 11
allele frequency: 1.404494382022472e-3
allele num: 7832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.448303137594636e-4
allele num: 53098
num of homozygotes: 1

Latino
type: Population
allele count: 6
allele frequency: 6.189395502372602e-4
allele num: 9694
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.784258608573436e-5
allele num: 11384
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.701242571582928e-4
allele num: 7404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.019196e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

FS
type: SiteQuality
SIO_000300: 1.772e0

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

QD
type: SiteQuality
SIO_000300: 1.244e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 1582
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6373
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variant carriers: 0

GenotypeQuality
all individuals: 9424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
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variant carriers: 0

GenotypeQuality
all individuals: 5191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4032
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.863932898415657e-5
allele num: 53650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

DP
type: SiteQuality
SIO_000300: 1.041107e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.212e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

GenotypeQuality
all individuals: 703
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 714
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3938
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4437
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.364041385912589e-5
allele num: 54318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.236399604352127e-4
allele num: 8088
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.8774e1

QD
type: SiteQuality
SIO_000300: 3.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.229e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: -2.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.17e-1

DP
type: SiteQuality
SIO_000300: 1.136065e6

GenotypeQuality
all individuals: 714
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5356
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.841010346478147e-5
allele num: 54318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.229e0

VQSLOD
type: SiteQuality
SIO_000300: -2.6e0

QD
type: SiteQuality
SIO_000300: 3.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.17e-1

FS
type: SiteQuality
SIO_000300: 2.8774e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.136065e6

GenotypeQuality
all individuals: 683
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3223
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4748
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3600
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21434
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2225
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56284
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.286008230452675e-4
allele num: 7776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 3.103e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

DP
type: SiteQuality
SIO_000300: 1.171943e6

QD
type: SiteQuality
SIO_000300: 1.826e1

GenotypeQuality
all individuals: 273
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24602
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7945
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57264
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.604562737642586e-5
allele num: 13150
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.428e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

FS
type: SiteQuality
SIO_000300: 9.615e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 1.220518e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

GenotypeQuality
all individuals: 1360
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3012
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7412
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 3657
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.559575795383656e-4
allele num: 12824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.637673775383943e-4
allele num: 54956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.52112676056338e-4
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.032520325203252e-4
allele num: 4920
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.92e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

DP
type: SiteQuality
SIO_000300: 1.265271e6

QD
type: SiteQuality
SIO_000300: 3.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.822e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.423e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 1393
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7412
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 563
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 4.25e1
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GenotypeQuality
all individuals: 1489
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 22028
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.911420045127011e-4
allele num: 54956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.173708920187793e-4
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.032520325203252e-4
allele num: 4920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 7.92e0

QD
type: SiteQuality
SIO_000300: 3.64e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

DP
type: SiteQuality
SIO_000300: 1.265271e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.75e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.423e0

VQSLOD
type: SiteQuality
SIO_000300: -1.822e0

GenotypeQuality
all individuals: 1980
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 882
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variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 9.75e1
variant carriers: 10

Latino
type: Population
allele count: 6
allele frequency: 5.546311702717693e-4
allele num: 10818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14240
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.169668040789759e-4
allele num: 9218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.322038402763936e-5
allele num: 60204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.352305e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

MQ
type: SiteQuality
SIO_000300: 5.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.463e0

QD
type: SiteQuality
SIO_000300: 1.2e1

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 767
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.649620587264929e-5
allele num: 60620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.221689413500554e-5
allele num: 10844
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.791736460078169e-4
allele num: 14328
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.089e1

FS
type: SiteQuality
SIO_000300: 9.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.15e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

DP
type: SiteQuality
SIO_000300: 1.370266e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631481058504911e-5
allele num: 61294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.384418e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.645e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3360
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 940
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GenotypeQuality
all individuals: 3319
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.778089887640449e-5
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64848
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.56e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 2.298e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.66e0

DP
type: SiteQuality
SIO_000300: 1.485381e6

GenotypeQuality
all individuals: 946
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variant carriers: 0

GenotypeQuality
all individuals: 106
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1685
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531956614988664e-5
allele num: 65276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.896e0

DP
type: SiteQuality
SIO_000300: 1.496543e6

QD
type: SiteQuality
SIO_000300: 1.361e1

FS
type: SiteQuality
SIO_000300: 5.93e0

VQSLOD
type: SiteQuality
SIO_000300: -2.796e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 974
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.174e0

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

MQRankSum
type: SiteQuality
SIO_000300: -1.066e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.542e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.512e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.500057e6

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65648
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.139e0

DP
type: SiteQuality
SIO_000300: 1.506169e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.031e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 1.374e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514417252241338e-5
allele num: 66032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.515356e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
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SIO_000300: 8.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: -1.51e-1

MQ
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SIO_000300: 5.942e1

DP
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SIO_000300: 1.516122e6

QD
type: SiteQuality
SIO_000300: 1.13e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512950859356088e-5
allele num: 66096
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

DP
type: SiteQuality
SIO_000300: 1.516622e6

QD
type: SiteQuality
SIO_000300: 1.43e0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

FS
type: SiteQuality
SIO_000300: 1.348e0

VQSLOD
type: SiteQuality
SIO_000300: -7.988e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512218727316719e-5
allele num: 66128
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.518974e6

VQSLOD
type: SiteQuality
SIO_000300: 4.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.291e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

FS
type: SiteQuality
SIO_000300: 1.192e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

QD
type: SiteQuality
SIO_000300: 1.601e1

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66024
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.573e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

FS
type: SiteQuality
SIO_000300: 6.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.518078e6

VQSLOD
type: SiteQuality
SIO_000300: 8.24e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.703085581214826e-5
allele num: 10306
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

QD
type: SiteQuality
SIO_000300: 1.338e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.969e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

DP
type: SiteQuality
SIO_000300: 1.511325e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.933e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128953174797744e-5
allele num: 16316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

DP
type: SiteQuality
SIO_000300: 1.505942e6

MQ
type: SiteQuality
SIO_000300: 5.731e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.597e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.154603643525357e-5
allele num: 16248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.541e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.492974e6

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65730
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.528117359413203e-4
allele num: 6544
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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DP
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8468
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.649000464900046e-4
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.486864e6

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 8.890000000000001e0

QD
type: SiteQuality
SIO_000300: 1.169e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3383
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8429
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522533495736906e-5
allele num: 65680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

DP
type: SiteQuality
SIO_000300: 1.483517e6

FS
type: SiteQuality
SIO_000300: 9.797000000000001e0

QD
type: SiteQuality
SIO_000300: 1.013e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.077e0

MQ
type: SiteQuality
SIO_000300: 5.791e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.472e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
all individuals: 90
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3258
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 963
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527183872938302e-5
allele num: 65480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

DP
type: SiteQuality
SIO_000300: 1.476446e6

QD
type: SiteQuality
SIO_000300: 9.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 7.075e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.348e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1345
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.724480893386844e-5
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16018
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.4607e6

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

FS
type: SiteQuality
SIO_000300: 2.143e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.874e0

QD
type: SiteQuality
SIO_000300: 1.35e1

GenotypeQuality
all individuals: 301
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1333
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7981
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16002
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65464
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.773260359655981e-5
allele num: 10232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.451705e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e0

QD
type: SiteQuality
SIO_000300: 1.174e1

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

FS
type: SiteQuality
SIO_000300: 2.243e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
all individuals: 1523
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 979
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1073
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2211
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2489
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2077
bin: 9.75e1
variant carriers: 399

GenotypeQuality
all individuals: 3170
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3265
bin: 7.75e1
variant carriers: 2

African
type: Population
allele count: 386
allele frequency: 3.787284144427001e-2
allele num: 10192
num of homozygotes: 6

Latino
type: Population
allele count: 23
allele frequency: 2.007331122359923e-3
allele num: 11458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.072139684484607e-4
allele num: 65290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15836
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.28310502283105e-3
allele num: 876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

FS
type: SiteQuality
SIO_000300: 2.182e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

DP
type: SiteQuality
SIO_000300: 1.439601e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.245e1

GenotypeQuality
all individuals: 2737
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3134
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537751806858373e-5
allele num: 65030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-1

DP
type: SiteQuality
SIO_000300: 1.433968e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.08e1

MQ
type: SiteQuality
SIO_000300: 5.652e1

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.35970490969219e-5
allele num: 15724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.13553394484155e-5
allele num: 65194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 5.7e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 1.306e1

DP
type: SiteQuality
SIO_000300: 1.432321e6

GenotypeQuality
all individuals: 2560
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3362
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22888
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 201
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2980
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7448
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15568
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.971220185294697e-4
allele num: 10146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 37
allele frequency: 5.684087627123852e-4
allele num: 65094
num of homozygotes: 1

Latino
type: Population
allele count: 5
allele frequency: 4.371393600279769e-4
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.404e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

DP
type: SiteQuality
SIO_000300: 1.431101e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

QD
type: SiteQuality
SIO_000300: 1.248e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
all individuals: 3386
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2437
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2285
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536523155403952e-5
allele num: 65082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.29e-1

QD
type: SiteQuality
SIO_000300: 1.039e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.529e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.431407e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4591
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9248
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1677
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 670
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3801
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5358
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3123
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.391200382592061e-4
allele num: 8364
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.262307498106539e-4
allele num: 7922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.528740317977986e-4
allele num: 39248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.79e1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.65e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-1

QD
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 1.073552e6

GenotypeQuality
all individuals: 6038
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3466
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.82848784055586e-5
allele num: 54690
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.777e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.743e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.468e1

DP
type: SiteQuality
SIO_000300: 1.10182e6

FS
type: SiteQuality
SIO_000300: 2.218e0

GenotypeQuality
all individuals: 148
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5517
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11915
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3116
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.820962925194843e-5
allele num: 54916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4138
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.834e0

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 2.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.421e1

DP
type: SiteQuality
SIO_000300: 1.125554e6

GenotypeQuality
all individuals: 2023
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11877
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4742
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
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variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5338
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8714
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.90625e-4
allele num: 7680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.8195713089996e-5
allele num: 54958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.214e1

DP
type: SiteQuality
SIO_000300: 1.132257e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.728e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-2

FS
type: SiteQuality
SIO_000300: 7.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 9088
bin: 2.25e1
variant carriers: 132

GenotypeQuality
all individuals: 1450
bin: 5.25e1
variant carriers: 167

GenotypeQuality
all individuals: 14545
bin: 6.25e1
variant carriers: 181

GenotypeQuality
all individuals: 3681
bin: 2.75e1
variant carriers: 90

GenotypeQuality
all individuals: 1426
bin: 4.75e1
variant carriers: 163

GenotypeQuality
all individuals: 567
bin: 8.25e1
variant carriers: 233

GenotypeQuality
all individuals: 2243
bin: 6.75e1
variant carriers: 173

GenotypeQuality
all individuals: 787
bin: 7.25e1
variant carriers: 161

GenotypeQuality
all individuals: 826
bin: 7.75e1
variant carriers: 237

GenotypeQuality
all individuals: 11643
bin: 9.75e1
variant carriers: 9384

GenotypeQuality
all individuals: 4794
bin: 3.25e1
variant carriers: 150

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 214

Other
type: Population
allele count: 78
allele frequency: 1.098591549295775e-1
allele num: 710
num of homozygotes: 4

Latino
type: Population
allele count: 590
allele frequency: 6.165099268547544e-2
allele num: 9570
num of homozygotes: 19

East Asian
type: Population
allele count: 4
allele frequency: 5.189413596263622e-4
allele num: 7708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 608
allele frequency: 1.391941391941392e-1
allele num: 4368
num of homozygotes: 32

African
type: Population
allele count: 751
allele frequency: 8.455302859716281e-2
allele num: 8882
num of homozygotes: 24

South Asian
type: Population
allele count: 760
allele frequency: 6.102457041914244e-2
allele num: 12454
num of homozygotes: 33

European (Non-Finnish)
type: Population
allele count: 8979
allele frequency: 1.581868151227934e-1
allele num: 56762
num of homozygotes: 590

MQ
type: SiteQuality
SIO_000300: 5.763e1

QD
type: SiteQuality
SIO_000300: 1.342e1

FS
type: SiteQuality
SIO_000300: 4.697e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.96e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

DP
type: SiteQuality
SIO_000300: 1.207924e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

GenotypeQuality
all individuals: 455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4370
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
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variant carriers: 0

GenotypeQuality
all individuals: 3046
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 650
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.03327133705311e-4
allele num: 9678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.191316e6

FS
type: SiteQuality
SIO_000300: 5.609e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

MQ
type: SiteQuality
SIO_000300: 5.616e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.588e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.613e0

QD
type: SiteQuality
SIO_000300: 4.87e0

GenotypeQuality
all individuals: 11438
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4351
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12752
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.12410071942446e-4
allele num: 8896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7738
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.031140441328109e-4
allele num: 9698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.043405676126878e-4
allele num: 57504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

DP
type: SiteQuality
SIO_000300: 1.19981e6

QD
type: SiteQuality
SIO_000300: 1.16e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

MQ
type: SiteQuality
SIO_000300: 5.714e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.83e-1

GenotypeQuality
all individuals: 2817
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11300
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57724
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.678132678132678e-5
allele num: 13024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8928
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.912e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 1.214697e6

QD
type: SiteQuality
SIO_000300: 1.224e1

VQSLOD
type: SiteQuality
SIO_000300: -2.285e0

GenotypeQuality
all individuals: 3215
bin: 9.75e1
variant carriers: 173

GenotypeQuality
all individuals: 3762
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5347
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 635
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2850
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 938
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 382
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 475
bin: 8.25e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.606638259699485e-4
allele num: 8918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.729924229318756e-4
allele num: 57806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13152
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.575991756826378e-4
allele num: 7764
num of homozygotes: 0

Latino
type: Population
allele count: 171
allele frequency: 1.754205990972507e-2
allele num: 9748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4386
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.222017e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

FS
type: SiteQuality
SIO_000300: 3.377e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.857e-1

MQ
type: SiteQuality
SIO_000300: 5.777e1

GenotypeQuality
all individuals: 4141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3733
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 375
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.724554202738592e-5
allele num: 57986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: -1.521e0

FS
type: SiteQuality
SIO_000300: 3.315e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

MQ
type: SiteQuality
SIO_000300: 5.388e1

QD
type: SiteQuality
SIO_000300: 9.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

DP
type: SiteQuality
SIO_000300: 1.22428e6

GenotypeQuality
all individuals: 375
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11262
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13312
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.024170421958214e-4
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.388e1

QD
type: SiteQuality
SIO_000300: 9.52e0

FS
type: SiteQuality
SIO_000300: 3.315e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

VQSLOD
type: SiteQuality
SIO_000300: -1.521e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 1.22428e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

GenotypeQuality
all individuals: 3727
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5286
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.434944237918216e-5
allele num: 13450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.722652885443583e-5
allele num: 58050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.470000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.151e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

DP
type: SiteQuality
SIO_000300: 1.231056e6

GenotypeQuality
all individuals: 526
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2994
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.712211492363537e-5
allele num: 58404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.823e1

DP
type: SiteQuality
SIO_000300: 1.252692e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.936e0

FS
type: SiteQuality
SIO_000300: 7.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0