16-58549920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549920
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549920
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 27912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.181G>A
  hgvsp: ENSP00000310082.2:p.Ala61Thr
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.226G>A
  hgvsp: ENSP00000412858.1:p.Ala76Thr
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.181G>A
  hgvsp: ENSP00000398033.1:p.Ala61Thr
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.181G>A
  hgvsp: ENSP00000377809.4:p.Ala61Thr
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.253G>A
  hgvsp: ENSP00000219315.4:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.433G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.487G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.219G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.172G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.117+136G>A
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27984
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala85Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

16-58549929-CTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549929
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549926
    reference: chr 16
allele count: 1
allele frequency: 3.412503412503413e-5
allele num: 29304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.233_235delGTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.267_269delGTT
  hgvsp: ENSP00000219315.4:p.Leu89del
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.195_197delGTT
  hgvsp: ENSP00000377809.4:p.Leu65del
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.447_449delGTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.195_197delGTT
  hgvsp: ENSP00000310082.2:p.Leu65del
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.501_503delGTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.240_242delGTT
  hgvsp: ENSP00000412858.1:p.Leu80del
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.195_197delGTT
  hgvsp: ENSP00000398033.1:p.Leu65del
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.117+150_117+152delGTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.186_188delGTT
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu89del
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: CTGT
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

16-58549932-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549932
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549932
    reference: chr 16
allele count: 33392
allele frequency: 6.820261437908497e-1
allele num: 48960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.184T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.238T>C
  hgvsp: ENST00000422445.1:c.238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.193T>C
  hgvsp: ENST00000310682.2:c.193T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.445T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.117+148T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.499T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.193T>C
  hgvsp: ENST00000427443.1:c.193T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.231T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.193T>C
  hgvsp: ENST00000394266.4:c.193T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.265T>C
  hgvsp: ENST00000219315.4:c.265T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 3.75e1
  variant carriers: 517
genotype depth: GenotypeDepth
  all individuals: 20837
  bin: 7.5e0
  variant carriers: 13599
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 168
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 2.75e1
  variant carriers: 1388
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 1.75e1
  variant carriers: 5762
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.25e1
  variant carriers: 816
genotype depth: GenotypeDepth
  all individuals: 7433
  bin: 2.5e0
  variant carriers: 3631
genotype depth: GenotypeDepth
  all individuals: 12798
  bin: 1.25e1
  variant carriers: 11178
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 2.25e1
  variant carriers: 2794
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4441
  bin: 1.75e1
  variant carriers: 4126
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 4.25e1
  variant carriers: 975
hgvs: p.Leu89Leu
num of homozygotes: 10760
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

16-58549944-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549944
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549944
    reference: chr 16
allele count: 2
allele frequency: 7.330840847445201e-5
allele num: 27282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.205C>T
  hgvsp: ENSP00000310082.2:p.Pro69Ser
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.196C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.205C>T
  hgvsp: ENSP00000398033.1:p.Pro69Ser
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.117+160C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.277C>T
  hgvsp: ENSP00000219315.4:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.205C>T
  hgvsp: ENSP00000377809.4:p.Pro69Ser
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.511C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.457C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.243C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.250C>T
  hgvsp: ENSP00000412858.1:p.Pro84Ser
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17365
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24948
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16993
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro93Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

16-58549968-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549968
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549968
    reference: chr 16
allele count: 1
allele frequency: 5.229578495973224e-5
allele num: 19122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.220C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.267C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.274C>T
  hgvsp: ENSP00000412858.1:p.His92Tyr
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.229C>T
  hgvsp: ENSP00000377809.4:p.His77Tyr
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.229C>T
  hgvsp: ENSP00000310082.2:p.His77Tyr
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.229C>T
  hgvsp: ENSP00000398033.1:p.His77Tyr
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.301C>T
  hgvsp: ENSP00000219315.4:p.His101Tyr
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.481C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-138C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.535C>T
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His101Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-58549970-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549970
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549970
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 18428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.231C>A
  hgvsp: ENSP00000310082.2:p.His77Gln
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.222C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.231C>A
  hgvsp: ENSP00000377809.4:p.His77Gln
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.269C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.483C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.537C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.231C>A
  hgvsp: ENSP00000398033.1:p.His77Gln
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.303C>A
  hgvsp: ENSP00000219315.4:p.His101Gln
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.276C>A
  hgvsp: ENSP00000412858.1:p.His92Gln
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-136C>A
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20601
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His101Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

16-58549975-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549975
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549975
    reference: chr 16
allele count: 1
allele frequency: 6.368615462998345e-5
allele num: 15702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.488G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.542G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.236G>C
  hgvsp: ENSP00000310082.2:p.Cys79Ser
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.236G>C
  hgvsp: ENSP00000398033.1:p.Cys79Ser
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.308G>C
  hgvsp: ENSP00000219315.4:p.Cys103Ser
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.281G>C
  hgvsp: ENSP00000412858.1:p.Cys94Ser
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.236G>C
  hgvsp: ENSP00000377809.4:p.Cys79Ser
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-131G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.274G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.227G>C
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Cys103Ser
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

16-58549978-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549978
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549978
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 13354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.239C>T
  hgvsp: ENSP00000398033.1:p.Ser80Phe
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.284C>T
  hgvsp: ENSP00000412858.1:p.Ser95Phe
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.545C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.230C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.239C>T
  hgvsp: ENSP00000377809.4:p.Ser80Phe
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-128C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.277C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.311C>T
  hgvsp: ENSP00000219315.4:p.Ser104Phe
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.491C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.239C>T
  hgvsp: ENSP00000310082.2:p.Ser80Phe
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16205
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser104Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

16-58549981-TCGGCGGCCTGCTGGAGCGAGGTGGGCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549981
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549954
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 12598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: splice donor
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29684
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15782
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: TCGGCGGCCTGCTGGAGCGAGGTGGGCA
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

16-58549984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549984
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549984
    reference: chr 16
allele count: 2
allele frequency: 1.905850962454736e-4
allele num: 10494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-122G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.245G>A
  hgvsp: ENSP00000398033.1:p.Gly82Asp
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.317G>A
  hgvsp: ENSP00000219315.4:p.Gly106Asp
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.283G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.551G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.245G>A
  hgvsp: ENSP00000377809.4:p.Gly82Asp
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.290G>A
  hgvsp: ENSP00000412858.1:p.Gly97Asp
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.245G>A
  hgvsp: ENSP00000310082.2:p.Gly82Asp
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.497G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.236G>A
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14521
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31010
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly106Asp
num of homozygotes: 1
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

16-58549987-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549987
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549987
    reference: chr 16
allele count: 1
allele frequency: 1.199616122840691e-4
allele num: 8336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.248G>A
  hgvsp: ENSP00000310082.2:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.320G>A
  hgvsp: ENSP00000219315.4:p.Gly107Asp
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-119G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.239G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.286G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.500G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.248G>A
  hgvsp: ENSP00000377809.4:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.293G>A
  hgvsp: ENSP00000412858.1:p.Gly98Asp
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.554G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.248G>A
  hgvsp: ENSP00000398033.1:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12886
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly107Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

16-58549993-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549993
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549993
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 5676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.292T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.245T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.326T>C
  hgvsp: ENSP00000219315.4:p.Leu109Pro
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.254T>C
  hgvsp: ENSP00000398033.1:p.Leu85Pro
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-113T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.506T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.254T>C
  hgvsp: ENSP00000310082.2:p.Leu85Pro
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.299T>C
  hgvsp: ENSP00000412858.1:p.Leu100Pro
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.254T>C
  hgvsp: ENSP00000377809.4:p.Leu85Pro
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.560T>C
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10501
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu109Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

16-58549995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549995
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549995
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 5632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.256G>A
  hgvsp: ENSP00000398033.1:p.Glu86Lys
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.294G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.256G>A
  hgvsp: ENSP00000310082.2:p.Glu86Lys
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.508G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.247G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.328G>A
  hgvsp: ENSP00000219315.4:p.Glu110Lys
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.301G>A
  hgvsp: ENSP00000412858.1:p.Glu101Lys
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.256G>A
  hgvsp: ENSP00000377809.4:p.Glu86Lys
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-111G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.562G>A
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10403
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu110Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

16-58549998-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58549998
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549998
    reference: chr 16
allele count: 1
allele frequency: 2.058460271716756e-4
allele num: 4858
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-108C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.511C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.259C>G
  hgvsp: ENSP00000398033.1:p.Arg87Gly
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.331C>G
  hgvsp: ENSP00000219315.4:p.Arg111Gly
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.304C>G
  hgvsp: ENSP00000412858.1:p.Arg102Gly
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.565C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.297C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.259C>G
  hgvsp: ENSP00000377809.4:p.Arg87Gly
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.259C>G
  hgvsp: ENSP00000310082.2:p.Arg87Gly
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.250C>G
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg111Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

16-58550012-CGGCGGGCTAGGGCCCTGGGGCGGGGCGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550012
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58549984
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 928
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26045
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27853
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: CGGCGGGCTAGGGCCCTGGGGCGGGGCGG
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

16-58550014-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550014
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550014
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-92G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+13G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+13G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+13G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+13G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+13G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+13G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+13G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+13G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+13G>C
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23109
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

16-58550024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550024
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550024
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-82G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+23G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+23G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+23G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+23G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+23G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+23G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+23G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+23G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+23G>A
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15412
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: FS

16-58550027-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550027
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550027
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+26C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+26C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+26C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+26C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+26C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-79C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+26C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+26C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+26C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+26C>T
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11944
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

16-58550028-T-TGGTGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550028
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550033
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 92
alternate allele: TGGTGC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+29_300+30insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+29_307+30insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+29_514+30insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+29_568+30insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+29_262+30insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+29_262+30insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+29_262+30insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+29_253+30insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-76_118-75insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+29_334+30insTGCGG
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10174
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

16-58550028-TGGGGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550028
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550023
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 92
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-50_262+51delGCGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-50_253+51delGCGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-54_118-50delGCGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-50_568+51delGCGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-50_300+51delGCGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-50_307+51delGCGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-50_262+51delGCGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-50_514+51delGCGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-50_262+51delGCGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-50_334+51delGCGGG
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10174
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: TGGGGC
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

16-58550028-TGGGGCGGGGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550028
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550018
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 92
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10174
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: TGGGGCGGGGC
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-58550029-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550029
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550029
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 24
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-77G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+28G>A
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-58550031-G-GGCGGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550031
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550036
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 42
alternate allele: GGCGGT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+34_514+35insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+34_262+35insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+34_334+35insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+34_262+35insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-71_118-70insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+34_262+35insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+34_300+35insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+34_307+35insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+34_568+35insTGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+34_253+35insTGCGG
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

16-58550034-G-GGGGCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550034
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550039
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 56
alternate allele: GGGGCA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+37_568+38insAGGGC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+37_262+38insAGGGC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+37_307+38insAGGGC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+37_262+38insAGGGC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+37_300+38insAGGGC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+37_514+38insAGGGC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+37_334+38insAGGGC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+37_253+38insAGGGC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-68_118-67insAGGGC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+37_262+38insAGGGC
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

16-58550034-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550034
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550034
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 56
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+33G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+33G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+33G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+33G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-72G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+33G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+33G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+33G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+33G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+33G>T
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

16-58550035-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550035
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550035
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 82
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+34G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+34G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+34G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+34G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+34G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+34G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-71G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+34G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+34G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+34G>T
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

16-58550036-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550036
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550036
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 94
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.1G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+35G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+35G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+35G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+35G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+35G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+35G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+35G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-70G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+35G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+35G>T
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

16-58550038-CGGGGCGGGGCGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550038
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550026
    reference: chr 16
allele count: 40
allele frequency: 2.061855670103093e-1
allele num: 194
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.6_17delGGCGGGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 7.5e0
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 13
num of homozygotes: 8
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: CGGGGCGGGGCGG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

16-58550041-G-GGCGGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550041
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550046
    reference: chr 16
allele count: 1
allele frequency: 2.049180327868853e-3
allele num: 488
alternate allele: GGCGGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-61_118-60insAGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+44_262+45insAGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.10_11insAGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+44_514+45insAGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+44_262+45insAGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+44_262+45insAGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+44_334+45insAGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+44_253+45insAGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+44_568+45insAGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+44_300+45insAGCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+44_307+45insAGCGG
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ

16-58550042-G-GCGGGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550042
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550047
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 528
alternate allele: GCGGGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+45_262+46insACGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+45_262+46insACGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.11_12insACGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+45_300+46insACGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-60_118-59insACGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+45_568+46insACGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+45_514+46insACGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+45_253+46insACGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+45_262+46insACGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+45_307+46insACGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+45_334+46insACGGG
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-58550043-CGGGGCGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550043
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550036
    reference: chr 16
allele count: 32
allele frequency: 4.776119402985075e-2
allele num: 670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+45_307+51delGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+45_262+51delGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+45_262+51delGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+45_334+51delGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-60_118-54delGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+45_568+51delGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+45_300+51delGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.11_17delGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+45_253+51delGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+45_514+51delGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+45_262+51delGGCGGGG
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11193
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 7.5e0
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.25e1
  variant carriers: 4
num of homozygotes: 7
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: CGGGGCGG
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/16-58550043-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550043
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550043
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-63C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.8C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+42C>A
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11193
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

16-58550043-C-CGGGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550043
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550048
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 670
alternate allele: CGGGGG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+46_262+47insGGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+46_262+47insGGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+46_253+47insGGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+46_300+47insGGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+46_568+47insGGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+46_262+47insGGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+46_334+47insGGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+46_307+47insGGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.12_13insGGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-59_118-58insGGGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+46_514+47insGGGGG
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11193
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

16-58550044-GGGGCGGGGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550044
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550035
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.14_22delGGGGCGGGC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12569
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14648
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: GGGGCGGGGC
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

16-58550046-G-GTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550046
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550048
    reference: chr 16
allele count: 2
allele frequency: 1.379310344827586e-3
allele num: 1450
alternate allele: GTC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+45_307+46insTC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+45_262+46insTC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+45_262+46insTC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+45_514+46insTC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.11_12insTC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+45_262+46insTC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+45_568+46insTC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+45_300+46insTC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+45_253+46insTC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+45_334+46insTC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-60_118-59insTC
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13956
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-58550047-G-GGGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550047
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550050
    reference: chr 16
allele count: 2
allele frequency: 1.228501228501228e-3
allele num: 1628
alternate allele: GGGT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+46_253+47insGGT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+46_514+47insGGT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+46_334+47insGGT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+46_300+47insGGT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+46_262+47insGGT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+46_262+47insGGT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.12_13insGGT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+46_568+47insGGT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+46_262+47insGGT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+46_307+47insGGT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-59_118-58insGGT
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

16-58550051-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550051
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550051
    reference: chr 16
allele count: 27
allele frequency: 1.901408450704225e-1
allele num: 142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+50G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.16G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+50G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-55G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+50G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+50G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+50G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+50G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+50G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+50G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+50G>T
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 6991
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 2
num of homozygotes: 9
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

16-58550052-G-GCGGGGCGGTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550052
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550062
    reference: chr 16
allele count: 66
allele frequency: 1.264367816091954e-1
allele num: 522
alternate allele: GCGGGGCGGTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.21_22insGCGGTTCGGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 7.5e0
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9192
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.25e1
  variant carriers: 2
num of homozygotes: 30
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

16-58550052-G-GCGGTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550052
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550057
    reference: chr 16
allele count: 133
allele frequency: 2.547892720306513e-1
allele num: 522
alternate allele: GCGGTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-51_569-50insTTCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-51_263-50insTTCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-51_263-50insTTCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-51_118-50insTTCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-51_301-50insTTCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-51_254-50insTTCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-51_515-50insTTCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-51_263-50insTTCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-51_335-50insTTCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.20_21insTTCGG
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-51_308-50insTTCGG
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 2.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 7.5e0
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 22
num of homozygotes: 52
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

16-58550052-G-GTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550052
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550054
    reference: chr 16
allele count: 68
allele frequency: 1.302681992337165e-1
allele num: 522
alternate allele: GTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+51_307+52insTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+51_514+52insTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+51_300+52insTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+51_262+52insTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.17_18insTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+51_262+52insTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+51_568+52insTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+51_334+52insTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-54_118-53insTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+51_253+52insTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+51_262+52insTT
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 2.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 7.5e0
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 6.25e1
  variant carriers: 2
num of homozygotes: 15
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

16-58550052-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550052
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550052
    reference: chr 16
allele count: 25
allele frequency: 4.789272030651341e-2
allele num: 522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.262+51G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.514+51G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.300+51G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.262+51G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.17G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.568+51G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.334+51G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.307+51G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.253+51G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.262+51G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-54G>T
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 3
num of homozygotes: 8
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

16-58550052-G-GCGGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550052
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550057
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 522
alternate allele: GCGGGC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-52_263-48dupGGGCC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-52_515-48dupGGGCC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-52_263-48dupGGGCC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-52_308-48dupGGGCC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-52_335-48dupGGGCC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-52_118-48dupGGGCC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-52_301-48dupGGGCC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-52_263-48dupGGGCC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-52_569-48dupGGGCC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.19_23dupGGGCC
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-52_254-48dupGGGCC
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-58550052-G-GTGGGGCGGTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550052
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550062
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 522
alternate allele: GTGGGGCGGTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.17_18insTGGGGCGGTT
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-58550060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550060
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550060
    reference: chr 16
allele count: 2
allele frequency: 1.112842198976185e-4
allele num: 17972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-46G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-46G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.25G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-46G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-46G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-46G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-46G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-46G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-46G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-46G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-46G>A
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7330
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24647
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20801
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17278
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/16-58550064-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550064
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550064
    reference: chr 16
allele count: 1
allele frequency: 4.785146904009953e-5
allele num: 20898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.29C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-42C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-42C>A
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14965
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

16-58550065-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550065
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550065
    reference: chr 16
allele count: 495
allele frequency: 2.198631962334547e-2
allele num: 22514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-41G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-41G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-41G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-41G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-41G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-41G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.30G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-41G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-41G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-41G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-41G>A
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13607
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 1.25e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30587
  bin: 7.5e0
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28292
  bin: 2.25e1
  variant carriers: 13
num of homozygotes: 5
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-58550072-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550072
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550072
    reference: chr 16
allele count: 2
allele frequency: 4.939491232403063e-5
allele num: 40490
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-34C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.37C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-34C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-34C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-34C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-34C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-34C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-34C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-34C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-34C>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-34C>G
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

16-58550072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550072
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550072
    reference: chr 16
allele count: 33
allele frequency: 8.150160533465053e-4
allele num: 40490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-34C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-34C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.37C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-34C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-34C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-34C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-34C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-34C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-34C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-34C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-34C>T
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28557
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 32
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

16-58550074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550074
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550074
    reference: chr 16
allele count: 24
allele frequency: 5.07399577167019e-4
allele num: 47300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-32C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.39C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-32C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-32C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-32C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-32C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-32C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-32C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-32C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-32C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-32C>T
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18246
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

16-58550075-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550075
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550075
    reference: chr 16
allele count: 1
allele frequency: 1.940541799270356e-5
allele num: 51532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-31G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-31G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-31G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-31G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-31G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-31G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.40G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-31G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-31G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-31G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-31G>T
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24670
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-58550077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550077
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550077
    reference: chr 16
allele count: 1
allele frequency: 1.635002125502763e-5
allele num: 61162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-29C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-29C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-29C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.42C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-29C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-29C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-29C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-29C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-29C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-29C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-29C>T
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25290
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

16-58550078-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550078
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550078
    reference: chr 16
allele count: 1
allele frequency: 1.530128224745234e-5
allele num: 65354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.43G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-28G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-28G>A
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

16-58550079-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550079
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550079
    reference: chr 16
allele count: 1
allele frequency: 1.429633441985475e-5
allele num: 69948
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-27G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-27G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-27G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-27G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-27G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-27G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.44G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-27G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-27G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-27G>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-27G>C
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

16-58550080-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550080
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550080
    reference: chr 16
allele count: 1
allele frequency: 1.372758970979875e-5
allele num: 72846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-26G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-26G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-26G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-26G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-26G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-26G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-26G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.45G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-26G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-26G>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-26G>T
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/16-58550082-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550082
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550082
    reference: chr 16
allele count: 3
allele frequency: 3.84970742223591e-5
allele num: 77928
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-24C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-24C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-24C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.47C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-24C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-24C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-24C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-24C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-24C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-24C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-24C>A
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32362
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/16-58550084-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550084
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550084
    reference: chr 16
allele count: 1
allele frequency: 1.172223003704225e-5
allele num: 85308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-22C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.49C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-22C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-22C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-22C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-22C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-22C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-22C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-22C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-22C>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-22C>A
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4275
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

16-58550089-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550089
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550089
    reference: chr 16
allele count: 1
allele frequency: 1.078050884001725e-5
allele num: 92760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-17A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-17A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-17A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-17A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-17A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-17A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.54A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-17A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-17A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-17A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-17A>G
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

16-58550091-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550091
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550091
    reference: chr 16
allele count: 1
allele frequency: 1.057887610020311e-5
allele num: 94528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-15C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-15C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-15C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.56C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-15C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-15C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-15C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-15C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-15C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-15C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-15C>T
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

16-58550092-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550092
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550092
    reference: chr 16
allele count: 2
allele frequency: 2.102872523867603e-5
allele num: 95108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-14T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.57T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-14T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-14T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-14T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-14T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-14T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-14T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-14T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-14T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-14T>C
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-58550092-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550092
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550092
    reference: chr 16
allele count: 1
allele frequency: 1.051436261933802e-5
allele num: 95108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-14T>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-14T>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-14T>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-14T>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.57T>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-14T>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-14T>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-14T>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-14T>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-14T>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-14T>G
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-58550094-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550094
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550094
    reference: chr 16
allele count: 1
allele frequency: 1.036527219204776e-5
allele num: 96476
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-12T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-12T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-12T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-12T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-12T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-12T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-12T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.59T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-12T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-12T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-12T>C
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8273
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ

16-58550095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550095
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550095
    reference: chr 16
allele count: 1
allele frequency: 1.030141953561201e-5
allele num: 97074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-11G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-11G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-11G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-11G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-11G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-11G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-11G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-11G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-11G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.60G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-11G>A
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40277
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

16-58550096-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550096
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550096
    reference: chr 16
allele count: 1
allele frequency: 1.024611160064755e-5
allele num: 97598
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-10T>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.61T>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-10T>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-10T>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-10T>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-10T>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-10T>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-10T>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-10T>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-10T>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-10T>A
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

16-58550099-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550099
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550099
    reference: chr 16
allele count: 1
allele frequency: 1.00800354817249e-5
allele num: 99206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-7T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-7T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-7T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-7T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-7T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-7T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.64T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-7T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-7T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-7T>C
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-7T>C
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.335-7T>C
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-58550104-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550104
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550104
    reference: chr 16
allele count: 1
allele frequency: 9.779951100244498e-6
allele num: 102250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.569-2A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.515-2A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.308-2A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.263-2A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.69A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.263-2A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.301-2A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.335-2A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.263-2A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.254-2A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.118-2A>G
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 7.5e0
  variant carriers: 0
hgvs: c.335-2A>G
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

16-58550109-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550109
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550109
    reference: chr 16
allele count: 1
allele frequency: 9.556940250009556e-6
allele num: 104636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.311G>A
  hgvsp: ENSP00000412858.1:p.Arg104Gln
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.304G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.266G>A
  hgvsp: ENSP00000377809.4:p.Arg89Gln
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.257G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.74G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.266G>A
  hgvsp: ENSP00000398033.1:p.Arg89Gln
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.338G>A
  hgvsp: ENSP00000219315.4:p.Arg113Gln
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.266G>A
  hgvsp: ENSP00000310082.2:p.Arg89Gln
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.121G>A
  hgvsp: ENSP00000396437.1:p.Glu41Lys
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.572G>A
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.518G>A
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg113Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

16-58550110-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550110
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550110
    reference: chr 16
allele count: 1
allele frequency: 9.510766187324051e-6
allele num: 105144
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.267A>G
  hgvsp: ENST00000394266.4:c.267A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.122A>G
  hgvsp: ENSP00000396437.1:p.Glu41Gly
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.305A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.258A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.75A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.267A>G
  hgvsp: ENST00000310682.2:c.267A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.312A>G
  hgvsp: ENST00000422445.1:c.312A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.267A>G
  hgvsp: ENST00000427443.1:c.267A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.519A>G
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.339A>G
  hgvsp: ENST00000219315.4:c.339A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.573A>G
  variant of: http://identifiers.org/hgnc/26116
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu41Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

16-58550120-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550120
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 58550120
    reference: chr 16
allele count: 1
allele frequency: 9.242998428690267e-6
allele num: 108190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000492050
  gene symbol: SETD6
  hgvsc: ENST00000492050.1:n.529C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000468223
  gene symbol: SETD6
  hgvsc: ENST00000468223.1:n.583C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000396437
  ensembl transcript: ENST00000447443
  gene symbol: SETD6
  hgvsc: ENST00000447443.1:c.132C>T
  hgvsp: ENST00000447443.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000418480
  gene symbol: SETD6
  hgvsc: ENST00000418480.1:n.268C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000377809
  ensembl transcript: ENST00000394266
  gene symbol: SETD6
  hgvsc: ENST00000394266.4:c.277C>T
  hgvsp: ENSP00000377809.4:p.Gln93Ter
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000467320
  gene symbol: SETD6
  hgvsc: ENST00000467320.1:n.85C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000219315
  ensembl transcript: ENST00000219315
  gene symbol: SETD6
  hgvsc: ENST00000219315.4:c.349C>T
  hgvsp: ENSP00000219315.4:p.Gln117Ter
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000398033
  ensembl transcript: ENST00000427443
  gene symbol: SETD6
  hgvsc: ENST00000427443.1:c.277C>T
  hgvsp: ENSP00000398033.1:p.Gln93Ter
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000412858
  ensembl transcript: ENST00000422445
  gene symbol: SETD6
  hgvsc: ENST00000422445.1:c.322C>T
  hgvsp: ENSP00000412858.1:p.Gln108Ter
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103037
  ensembl transcript: ENST00000470003
  gene symbol: SETD6
  hgvsc: ENST00000470003.1:n.315C>T
  variant of: http://identifiers.org/hgnc/26116
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103037
  ensembl protein: ENSP00000310082
  ensembl transcript: ENST00000310682
  gene symbol: SETD6
  hgvsc: ENST00000310682.2:c.277C>T
  hgvsp: ENSP00000310082.2:p.Gln93Ter
  variant of: http://identifiers.org/hgnc/26116
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln117Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-58550121-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58550121
    reference: chr 16
allele count: 1
allele frequency: 9.212853773584905e-6
allele num: 108544
alternate allele: C
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
hgvs: p.Gln117Pro
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 333
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2673
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24962
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14372
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 605
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 3.68e0

VQSLOD
type: SiteQuality
SIO_000300: -2.095e0

DP
type: SiteQuality
SIO_000300: 4.95468e5

QD
type: SiteQuality
SIO_000300: 5.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 911
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.867188572998215e-5
allele num: 14562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.335e1

DP
type: SiteQuality
SIO_000300: 5.06417e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.58e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 882
bin: 5.75e1
variant carriers: 837

GenotypeQuality
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variant carriers: 720

GenotypeQuality
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variant carriers: 3967

GenotypeQuality
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variant carriers: 2084

GenotypeQuality
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variant carriers: 1857

GenotypeQuality
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variant carriers: 1066

GenotypeQuality
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GenotypeQuality
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variant carriers: 1806

GenotypeQuality
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variant carriers: 159

GenotypeQuality
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variant carriers: 670

GenotypeQuality
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variant carriers: 1021

GenotypeQuality
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variant carriers: 1427

GenotypeQuality
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variant carriers: 890

GenotypeQuality
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variant carriers: 2774

GenotypeQuality
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variant carriers: 11458

GenotypeQuality
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variant carriers: 1220

GenotypeQuality
all individuals: 709
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variant carriers: 709

GenotypeQuality
all individuals: 570
bin: 7.25e1
variant carriers: 565

South Asian
type: Population
allele count: 7549
allele frequency: 7.60221550855992e-1
allele num: 9930
num of homozygotes: 2835

European (Non-Finnish)
type: Population
allele count: 15600
allele frequency: 5.936524849684146e-1
allele num: 26278
num of homozygotes: 3864

Other
type: Population
allele count: 210
allele frequency: 6.730769230769231e-1
allele num: 312
num of homozygotes: 67

Latino
type: Population
allele count: 2849
allele frequency: 7.654486835034927e-1
allele num: 3722
num of homozygotes: 1039

European (Finnish)
type: Population
allele count: 582
allele frequency: 5.785288270377733e-1
allele num: 1006
num of homozygotes: 136

African
type: Population
allele count: 2814
allele frequency: 7.568585260892953e-1
allele num: 3718
num of homozygotes: 1027

East Asian
type: Population
allele count: 3788
allele frequency: 9.484226339509264e-1
allele num: 3994
num of homozygotes: 1792

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.167e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.119999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 2.216e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

DP
type: SiteQuality
SIO_000300: 6.26476e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3121
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 283
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 3

GenotypeQuality
all individuals: 2457
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.835269993164729e-5
allele num: 14630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2054
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.434782608695652e-3
allele num: 184
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 7.72e0

FS
type: SiteQuality
SIO_000300: 6.494e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.78e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.188e0

DP
type: SiteQuality
SIO_000300: 4.44161e5

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 881
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 987
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GenotypeQuality
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GenotypeQuality
all individuals: 766
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GenotypeQuality
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GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 266
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4340
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.973500697350069e-4
allele num: 1434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.521e0

QD
type: SiteQuality
SIO_000300: 1.442e1

MQRankSum
type: SiteQuality
SIO_000300: -8.53e-1

DP
type: SiteQuality
SIO_000300: 3.49966e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.856e0

GenotypeQuality
all individuals: 23970
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1412
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.39755e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

QD
type: SiteQuality
SIO_000300: 1.146e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-2

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27967
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 316
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.181474480151229e-4
allele num: 8464
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

DP
type: SiteQuality
SIO_000300: 3.05818e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.92e-2

QD
type: SiteQuality
SIO_000300: 9.59e0

VQSLOD
type: SiteQuality
SIO_000300: 3.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7122
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.881e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.43e-2

DP
type: SiteQuality
SIO_000300: 2.81996e5

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.046e0

MQ
type: SiteQuality
SIO_000300: 5.739e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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SIO_000300: 7.27e-1

MQRankSum
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ClippingRankSum
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SIO_000300: 7.27e-1

FS
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SIO_000300: 0.0e0

VQSLOD
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DP
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SIO_000300: 2.73519e5

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.64e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.421307506053269e-3
allele num: 826
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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QD
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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DP
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InbreedingCoeff
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SIO_000300: -6.909999999999999e-2

BaseQRankSum
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SIO_000300: -9.22e-1

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 2124
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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SIO_000300: 7.2e-1

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3018
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 438
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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DP
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BaseQRankSum
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SIO_000300: -9.56e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2988
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 414
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1426
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.162e1

DP
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SIO_000300: 1.9712e5

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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South Asian
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Latino
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European (Finnish)
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num of homozygotes: 0

FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Other
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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MQ
type: SiteQuality
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QD
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DP
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FS
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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num of homozygotes: 0

East Asian
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Latino
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European (Non-Finnish)
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South Asian
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QD
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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FS
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BaseQRankSum
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DP
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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QD
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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Other
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South Asian
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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MQ
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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FS
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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MQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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African
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South Asian
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Other
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East Asian
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QD
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VQSLOD
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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African
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Latino
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South Asian
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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QD
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East Asian
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African
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Latino
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ReadPosRankSum
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SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.45e-2

DP
type: SiteQuality
SIO_000300: 5.8581e4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 2.93e1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 1109
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4684
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-1

MQ
type: SiteQuality
SIO_000300: 5.465e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.848e1

DP
type: SiteQuality
SIO_000300: 6.0579e4

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.303e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.59e-2

DP
type: SiteQuality
SIO_000300: 6.2155e4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

QD
type: SiteQuality
SIO_000300: 2.002e1

FS
type: SiteQuality
SIO_000300: 3.136e0

VQSLOD
type: SiteQuality
SIO_000300: 2.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 134
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 137
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1206
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6959
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variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 41
bin: 9.75e1
variant carriers: 41

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.666666666666667e-2
allele num: 30
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 4.615384615384616e-1
allele num: 26
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 2.291666666666667e-1
allele num: 96
num of homozygotes: 3

South Asian
type: Population
allele count: 4
allele frequency: 3.333333333333333e-1
allele num: 12
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.3e-2

MQ
type: SiteQuality
SIO_000300: 5.465e1

VQSLOD
type: SiteQuality
SIO_000300: -9.27e0

QD
type: SiteQuality
SIO_000300: 7.3e0

FS
type: SiteQuality
SIO_000300: 1.08578e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 6.6772e4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 630
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11444
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.111111111111111e-2
allele num: 90
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.8795e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.004e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.847e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.531e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.262e0

QD
type: SiteQuality
SIO_000300: 3.037e1

FS
type: SiteQuality
SIO_000300: 8.195e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

MQ
type: SiteQuality
SIO_000300: 5.566e1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12011
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.94e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.495e0

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 4.729e1

DP
type: SiteQuality
SIO_000300: 8.072e4

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
SIO_000300: 2.567e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
all individuals: 237
bin: 1.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 12826
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 15

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1222
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 15

GenotypeQuality
all individuals: 946
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.592592592592593e-2
allele num: 270
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 2.272727272727273e-2
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.272727272727273e-2
allele num: 44
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.702127659574468e-1
allele num: 94
num of homozygotes: 5

South Asian
type: Population
allele count: 4
allele frequency: 5.714285714285714e-2
allele num: 70
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.724137931034483e-2
allele num: 58
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.214e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 1.32351e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.319e1

MQ
type: SiteQuality
SIO_000300: 5.395e1

DP
type: SiteQuality
SIO_000300: 8.6658e4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
all individuals: 237
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12826
bin: 7.5e0
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 946
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 1222
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GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.395e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 8.6658e4

VQSLOD
type: SiteQuality
SIO_000300: -1.319e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.214e-1

FS
type: SiteQuality
SIO_000300: 1.32351e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 120
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -7.47e-1

ReadPosRankSum
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SIO_000300: 7.31e-1

BaseQRankSum
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SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.395e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
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SIO_000300: 8.6658e4

FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: 2.214e-1

QD
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SIO_000300: 1.394e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -9.619999999999999e-2

FS
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MQRankSum
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DP
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VQSLOD
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.322259136212625e-3
allele num: 602
num of homozygotes: 1

QD
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DP
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MQRankSum
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SIO_000300: -7.42e-1

ClippingRankSum
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SIO_000300: 7.42e-1

BaseQRankSum
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SIO_000300: 4.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.22e1

ReadPosRankSum
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SIO_000300: 1.11e0

InbreedingCoeff
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SIO_000300: -9.080000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.816901408450704e-3
allele num: 710
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.01e-2

MQ
type: SiteQuality
SIO_000300: 5.049e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
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SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 1.10283e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.4e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.0e-1
allele num: 10
num of homozygotes: 1

European (Finnish)
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allele count: 2
allele frequency: 4.761904761904762e-2
allele num: 42
num of homozygotes: 1

South Asian
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allele count: 3
allele frequency: 3.0e-1
allele num: 10
num of homozygotes: 1

European (Non-Finnish)
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allele count: 4
allele frequency: 6.25e-2
allele num: 64
num of homozygotes: 0

East Asian
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allele count: 10
allele frequency: 1.0e0
allele num: 10
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Latino
type: Population
allele count: 4
allele frequency: 6.666666666666666e-1
allele num: 6
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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MQ
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DP
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SIO_000300: 1.89623e5

FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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SIO_000300: 9.1e-2

GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 12
allele frequency: 1.666666666666667e-1
allele num: 72
num of homozygotes: 6

European (Non-Finnish)
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allele count: 16
allele frequency: 6.666666666666667e-2
allele num: 240
num of homozygotes: 6

Other
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele count: 31
allele frequency: 3.780487804878049e-1
allele num: 82
num of homozygotes: 15

South Asian
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allele count: 3
allele frequency: 5.555555555555555e-2
allele num: 54
num of homozygotes: 1

European (Finnish)
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allele count: 4
allele frequency: 8.333333333333333e-2
allele num: 48
num of homozygotes: 2

MQ
type: SiteQuality
SIO_000300: 5.465e1

InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 23
allele frequency: 4.259259259259259e-1
allele num: 54
num of homozygotes: 11

European (Finnish)
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allele count: 1
allele frequency: 2.083333333333333e-2
allele num: 48
num of homozygotes: 0

African
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allele frequency: 3.076923076923077e-1
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East Asian
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allele count: 18
allele frequency: 2.195121951219512e-1
allele num: 82
num of homozygotes: 6

European (Non-Finnish)
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allele count: 67
allele frequency: 2.791666666666667e-1
allele num: 240
num of homozygotes: 26

Latino
type: Population
allele count: 16
allele frequency: 2.222222222222222e-1
allele num: 72
num of homozygotes: 7

Other
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.95142e5

MQRankSum
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MQ
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QD
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 28

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 25
allele frequency: 3.472222222222222e-1
allele num: 72
num of homozygotes: 8

African
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allele count: 2
allele frequency: 7.692307692307693e-2
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num of homozygotes: 1

South Asian
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allele frequency: 1.481481481481481e-1
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East Asian
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allele frequency: 7.317073170731707e-2
allele num: 82
num of homozygotes: 0

European (Non-Finnish)
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allele count: 26
allele frequency: 1.083333333333333e-1
allele num: 240
num of homozygotes: 4

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.083333333333333e-2
allele num: 48
num of homozygotes: 0

MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 5.555555555555555e-2
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African
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East Asian
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allele frequency: 9.75609756097561e-2
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Other
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European (Non-Finnish)
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allele frequency: 1.666666666666667e-2
allele num: 240
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South Asian
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allele frequency: 5.555555555555555e-2
allele num: 54
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European (Finnish)
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allele frequency: 4.166666666666666e-2
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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QD
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FS
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MQRankSum
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VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: NaN
allele num: 0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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MQ
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QD
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FS
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ClippingRankSum
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VQSLOD
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 240
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Other
type: Population
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allele frequency: NaN
allele num: 0
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Latino
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allele frequency: 0.0e0
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African
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VQSLOD
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MQ
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QD
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BaseQRankSum
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FS
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SIO_000300: 4.0315e1

MQRankSum
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SIO_000300: 5.73e-1

DP
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.465e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.162629757785467e-4
allele num: 9248
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

BaseQRankSum
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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MQRankSum
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QD
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FS
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InbreedingCoeff
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SIO_000300: -3.84e-2

DP
type: SiteQuality
SIO_000300: 3.62894e5

VQSLOD
type: SiteQuality
SIO_000300: -1.6e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1892
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2446
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 9.087604507451835e-5
allele num: 11004
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Latino
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allele count: 0
allele frequency: 0.0e0
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Other
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ClippingRankSum
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SIO_000300: -7.27e-1

DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 26

European (Finnish)
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allele count: 2
allele frequency: 2.079002079002079e-3
allele num: 962
num of homozygotes: 0

African
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allele frequency: 5.208333333333333e-3
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European (Non-Finnish)
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allele frequency: 3.389691398555483e-2
allele num: 12184
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Latino
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allele num: 3234
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East Asian
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Other
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allele frequency: 3.846153846153846e-2
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South Asian
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allele frequency: 6.391347099311701e-3
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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QD
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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allele num: 23444
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Latino
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African
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South Asian
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 23444
num of homozygotes: 0

South Asian
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Other
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allele num: 228
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European (Finnish)
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African
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Latino
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East Asian
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
all individuals: 370
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16841
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24987
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.75e1
variant carriers: 24

East Asian
type: Population
allele count: 24
allele frequency: 5.188067444876783e-3
allele num: 4626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e0

FS
type: SiteQuality
SIO_000300: 1.245e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

DP
type: SiteQuality
SIO_000300: 6.88274e5

VQSLOD
type: SiteQuality
SIO_000300: -2.038e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.054e1

GenotypeQuality
all individuals: 587
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.443792766373412e-4
allele num: 4092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3330
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 7.25555e5

MQ
type: SiteQuality
SIO_000300: 5.811e1

QD
type: SiteQuality
SIO_000300: 1.459e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeQuality
all individuals: 477
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
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variant carriers: 0

GenotypeQuality
all individuals: 274
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 625
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35972
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.771793054571226e-4
allele num: 5644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2274e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.512e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.53e0

DP
type: SiteQuality
SIO_000300: 8.11232e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.92e-1

GenotypeQuality
all individuals: 1284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5689
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
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variant carriers: 0

GenotypeQuality
all individuals: 206
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 1

GenotypeQuality
all individuals: 389
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2865
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18525
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24760
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
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variant carriers: 0

GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38494
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.904761904761905e-4
allele num: 5250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.678e0

VQSLOD
type: SiteQuality
SIO_000300: -1.007e0

QD
type: SiteQuality
SIO_000300: 1.636e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

DP
type: SiteQuality
SIO_000300: 8.47996e5

MQRankSum
type: SiteQuality
SIO_000300: -1.043e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.662e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.04e-1

GenotypeQuality
all individuals: 672
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16984
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5354
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 1

GenotypeQuality
all individuals: 372
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
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variant carriers: 0

GenotypeQuality
all individuals: 290
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variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
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variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
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variant carriers: 0

GenotypeQuality
all individuals: 26605
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3584
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.596424010217114e-4
allele num: 6264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 3.882e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 8.85266e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.581e0

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
all individuals: 5139
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 544
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 1

GenotypeQuality
all individuals: 625
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variant carriers: 0

GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 3424
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
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variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.338415489664204e-5
allele num: 42764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.56e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.45e-1

FS
type: SiteQuality
SIO_000300: 2.672e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

VQSLOD
type: SiteQuality
SIO_000300: -1.261e0

DP
type: SiteQuality
SIO_000300: 9.05898e5

GenotypeQuality
all individuals: 450
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 717
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 564
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GenotypeQuality
all individuals: 128
bin: 9.25e1
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GenotypeQuality
all individuals: 541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13883
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6798
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.272965306567751e-4
allele num: 9166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3818
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.787e1

FS
type: SiteQuality
SIO_000300: 1.2377e1

VQSLOD
type: SiteQuality
SIO_000300: -1.426e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

DP
type: SiteQuality
SIO_000300: 9.54388e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.76e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.288e0

QD
type: SiteQuality
SIO_000300: 1.088e1

GenotypeQuality
all individuals: 685
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 276
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.75e1
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GenotypeQuality
all individuals: 429
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GenotypeQuality
all individuals: 156
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.008596794279516e-5
allele num: 49786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4646
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

BaseQRankSum
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SIO_000300: -1.826e0

MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 1.01e-2

DP
type: SiteQuality
SIO_000300: 1.017192e6

QD
type: SiteQuality
SIO_000300: 1.296e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7630
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10442
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South Asian
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allele frequency: 1.138174368313226e-4
allele num: 8786
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VQSLOD
type: SiteQuality
SIO_000300: -2.981e0

MQ
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ReadPosRankSum
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QD
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MQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -6.4e-3

BaseQRankSum
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SIO_000300: -2.522e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -1.532e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54266
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5528
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.296344309048483e-4
allele num: 7714
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.17e1

FS
type: SiteQuality
SIO_000300: 3.404e0

VQSLOD
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MQRankSum
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ReadPosRankSum
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SIO_000300: 1.08e0

BaseQRankSum
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SIO_000300: -2.261e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.398e0

DP
type: SiteQuality
SIO_000300: 1.099758e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7762
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.999400119976005e-4
allele num: 6668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54584
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

VQSLOD
type: SiteQuality
SIO_000300: -3.41e-1

FS
type: SiteQuality
SIO_000300: 1.0413e1

BaseQRankSum
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SIO_000300: -2.588e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

DP
type: SiteQuality
SIO_000300: 1.107909e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.832038692657189e-5
allele num: 54584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7762
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5432
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6668
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0413e1

DP
type: SiteQuality
SIO_000300: 1.107909e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.45e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

BaseQRankSum
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SIO_000300: -2.588e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6788
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.277465508431272e-4
allele num: 7828
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55110
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.558e0

MQRankSum
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VQSLOD
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BaseQRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55324
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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Other
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allele num: 678
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.122623e6

QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
type: SiteQuality
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InbreedingCoeff
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.801671951571058e-5
allele num: 55504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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SIO_000300: 6.57e-1

ClippingRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.783548548191482e-5
allele num: 56068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.028e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 7.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.746e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.141259e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: -2.181e0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5135
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41621
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.75051640233869e-5
allele num: 57126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12178
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.169131e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.102e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.731e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

QD
type: SiteQuality
SIO_000300: 2.96e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 210
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5569
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57978
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.336541031809677e-4
allele num: 7482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.641e0

MQ
type: SiteQuality
SIO_000300: 5.774e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.191126e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

FS
type: SiteQuality
SIO_000300: 1.149e0

QD
type: SiteQuality
SIO_000300: 1.029e1

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5323
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42831
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.718626473722201e-5
allele num: 58186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8052
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 3.064e0

QD
type: SiteQuality
SIO_000300: 1.399e1

VQSLOD
type: SiteQuality
SIO_000300: 3.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 1.195284e6

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5536
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.685431133283894e-5
allele num: 59332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14952
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

DP
type: SiteQuality
SIO_000300: 1.225345e6

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.844e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.003e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.766e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.598e0