http://identifiers.org/exac.variant/16-81211630-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81211630
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81211630
    reference: chr 16
allele count: 1
allele frequency: 1.057529610829103e-5
allele num: 94560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.843-42G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.205+1620G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.206-42G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.590-42G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.178-42G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2261-42G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.206-42G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2261-42G>T
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15828
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15565
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3619
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4478
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7042
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff

16-81213202-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213202
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213202
    reference: chr 16
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.589+48A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.842+48A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1554A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2260+48A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.205+48A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2260+48A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.205+48A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.205+48A>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25092
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

16-81213205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213205
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213205
    reference: chr 16
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.205+45C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1551C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.589+45C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.205+45C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.842+45C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2260+45C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.205+45C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2260+45C>T
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9639
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9629
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4629
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

16-81213220-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213220
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213218
    reference: chr 16
allele count: 3
allele frequency: 2.485089463220676e-5
allele num: 120720
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.205+28_205+29delCA
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.205+28_205+29delCA
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.842+28_842+29delCA
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.589+28_589+29delCA
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2260+28_2260+29delCA
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2260+28_2260+29delCA
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1534_177+1535delCA
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.205+28_205+29delCA
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: CTG
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

16-81213222-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213222
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213222
    reference: chr 16
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.842+28C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.205+28C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.205+28C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2260+28C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1534C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.589+28C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.205+28C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2260+28C>A
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5587
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4931
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25102
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

16-81213229-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213229
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213229
    reference: chr 16
allele count: 8
allele frequency: 6.625917275422816e-5
allele num: 120738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.589+21C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1527C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.205+21C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.842+21C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2260+21C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2260+21C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.205+21C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.205+21C>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5600
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

16-81213232-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213232
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213232
    reference: chr 16
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2260+18T>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.205+18T>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.842+18T>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2260+18T>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.205+18T>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.205+18T>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.589+18T>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1524T>A
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

16-81213238-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213238
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213238
    reference: chr 16
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1518C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.205+12C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.842+12C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2260+12C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2260+12C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.205+12C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.589+12C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.205+12C>A
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25103
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5618
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4713
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

16-81213245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213245
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213245
    reference: chr 16
allele count: 37
allele frequency: 3.06423294795773e-4
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.205+5G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.842+5G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2260+5G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.589+5G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2260+5G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.205+5G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.205+5G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1511G>A
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: c.205+5G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-81213246-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213246
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213246
    reference: chr 16
allele count: 119
allele frequency: 9.855235697485672e-4
allele num: 120748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.589+4C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.842+4C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.205+4C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2260+4C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.205+4C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2260+4C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.205+4C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1510C>T
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 9848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11010
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: c.205+4C>T
num of homozygotes: 2
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

16-81213251-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213251
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213251
    reference: chr 16
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.841A>T
  hgvsp: ENST00000526632.1:c.841A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2259A>T
  hgvsp: ENST00000337114.4:c.2259A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.204A>T
  hgvsp: ENST00000527937.1:c.204A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1505A>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2259A>T
  hgvsp: ENST00000525539.1:c.2259A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.204A>T
  hgvsp: ENST00000531391.1:c.204A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.588A>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.204A>T
  hgvsp: ENST00000533478.1:c.204A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25057
  bin: 9.75e1
  variant carriers: 1
hgvs: c.204A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

16-81213258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213258
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213258
    reference: chr 16
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.834G>A
  hgvsp: ENSP00000436389.1:p.Arg279Lys
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2252G>A
  hgvsp: ENSP00000337397.4:p.Arg751Lys
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.197G>A
  hgvsp: ENSP00000436309.1:p.Arg66Lys
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.197G>A
  hgvsp: ENSP00000434644.1:p.Arg66Lys
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.197G>A
  hgvsp: ENSP00000432818.1:p.Arg66Lys
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2252G>A
  hgvsp: ENSP00000434417.1:p.Arg751Lys
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1498G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.581G>A
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5641
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4959
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg66Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/16-81213261-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213261
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213261
    reference: chr 16
allele count: 2
allele frequency: 1.656122685568547e-5
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.578T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1495T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.194T>G
  hgvsp: ENSP00000432818.1:p.Ile65Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.194T>G
  hgvsp: ENSP00000434644.1:p.Ile65Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.831T>G
  hgvsp: ENSP00000436389.1:p.Ile278Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2249T>G
  hgvsp: ENSP00000434417.1:p.Ile750Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2249T>G
  hgvsp: ENSP00000337397.4:p.Ile750Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.194T>G
  hgvsp: ENSP00000436309.1:p.Ile65Ser
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5638
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4721
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile65Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ

16-81213261-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213261
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213260
    reference: chr 16
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.830delA
  hgvsp: ENSP00000436389.1:p.Ile278SerfsTer6
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.193delA
  hgvsp: ENSP00000434644.1:p.Ile65SerfsTer6
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2248delA
  hgvsp: ENSP00000337397.4:p.Ile750SerfsTer6
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1494delA
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.577delA
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.193delA
  hgvsp: ENSP00000436309.1:p.Ile65SerfsTer6
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2248delA
  hgvsp: ENSP00000434417.1:p.Ile750SerfsTer6
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.193delA
  hgvsp: ENSP00000432818.1:p.Ile65SerfsTer32
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile65SerfsTer32
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: AT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

16-81213263-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213263
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213263
    reference: chr 16
allele count: 9
allele frequency: 7.452675510508272e-5
allele num: 120762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.192A>G
  hgvsp: ENST00000531391.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.829A>G
  hgvsp: ENST00000526632.1:c.829A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.576A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2247A>G
  hgvsp: ENST00000525539.1:c.2247A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.192A>G
  hgvsp: ENST00000527937.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2247A>G
  hgvsp: ENST00000337114.4:c.2247A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.192A>G
  hgvsp: ENST00000533478.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1493A>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg64Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

16-81213264-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213264
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213264
    reference: chr 16
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.191G>A
  hgvsp: ENSP00000436309.1:p.Arg64Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2246G>A
  hgvsp: ENSP00000434417.1:p.Arg749Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.575G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1492G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.191G>A
  hgvsp: ENSP00000434644.1:p.Arg64Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2246G>A
  hgvsp: ENSP00000337397.4:p.Arg749Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.828G>A
  hgvsp: ENSP00000436389.1:p.Arg277Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.191G>A
  hgvsp: ENSP00000432818.1:p.Arg64Gln
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4959
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4141
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg64Gln
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-81213266-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213266
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213266
    reference: chr 16
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.189C>T
  hgvsp: ENST00000531391.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.189C>T
  hgvsp: ENST00000533478.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.189C>T
  hgvsp: ENST00000527937.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.573C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.826C>T
  hgvsp: ENST00000526632.1:c.826C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2244C>T
  hgvsp: ENST00000337114.4:c.2244C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2244C>T
  hgvsp: ENST00000525539.1:c.2244C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1490C>T
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile63Ile
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

16-81213271-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213271
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213271
    reference: chr 16
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.184G>C
  hgvsp: ENSP00000434644.1:p.Val62Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1485G>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.821G>C
  hgvsp: ENSP00000436389.1:p.Val275Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.184G>C
  hgvsp: ENSP00000436309.1:p.Val62Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2239G>C
  hgvsp: ENSP00000434417.1:p.Val747Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.184G>C
  hgvsp: ENSP00000432818.1:p.Val62Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.568G>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2239G>C
  hgvsp: ENSP00000337397.4:p.Val747Leu
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10168
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val62Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-81213273-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213273
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213273
    reference: chr 16
allele count: 2
allele frequency: 1.656067832538421e-5
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.566A>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1483A>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.182A>T
  hgvsp: ENSP00000436309.1:p.Glu61Val
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.819A>T
  hgvsp: ENSP00000436389.1:p.Glu274Val
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.182A>T
  hgvsp: ENSP00000432818.1:p.Glu61Val
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2237A>T
  hgvsp: ENSP00000337397.4:p.Glu746Val
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2237A>T
  hgvsp: ENSP00000434417.1:p.Glu746Val
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.182A>T
  hgvsp: ENSP00000434644.1:p.Glu61Val
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4722
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu61Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/16-81213276-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213276
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213276
    reference: chr 16
allele count: 3
allele frequency: 2.484101748807631e-5
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.816G>T
  hgvsp: ENSP00000436389.1:p.Gly273Val
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.179G>T
  hgvsp: ENSP00000434644.1:p.Gly60Val
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2234G>T
  hgvsp: ENSP00000434417.1:p.Gly745Val
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.179G>T
  hgvsp: ENSP00000436309.1:p.Gly60Val
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1480G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2234G>T
  hgvsp: ENSP00000337397.4:p.Gly745Val
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.179G>T
  hgvsp: ENSP00000432818.1:p.Gly60Val
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.563G>T
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly60Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

16-81213277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213277
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213277
    reference: chr 16
allele count: 14
allele frequency: 1.159247482776895e-4
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.178G>A
  hgvsp: ENSP00000434644.1:p.Gly60Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2233G>A
  hgvsp: ENSP00000434417.1:p.Gly745Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2233G>A
  hgvsp: ENSP00000337397.4:p.Gly745Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.562G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.178G>A
  hgvsp: ENSP00000432818.1:p.Gly60Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1479G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.815G>A
  hgvsp: ENSP00000436389.1:p.Gly273Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.178G>A
  hgvsp: ENSP00000436309.1:p.Gly60Arg
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5641
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly60Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/16-81213279-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213279
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213279
    reference: chr 16
allele count: 9
allele frequency: 7.452552085058461e-5
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.813G>T
  hgvsp: ENSP00000436389.1:p.Arg272Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.176G>T
  hgvsp: ENSP00000432818.1:p.Arg59Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.176G>T
  hgvsp: ENSP00000436309.1:p.Arg59Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.176G>T
  hgvsp: ENSP00000434644.1:p.Arg59Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.560G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2231G>T
  hgvsp: ENSP00000434417.1:p.Arg744Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1477G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2231G>T
  hgvsp: ENSP00000337397.4:p.Arg744Leu
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5639
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg59Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-81213279-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213279
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213279
    reference: chr 16
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.176G>C
  hgvsp: ENSP00000434644.1:p.Arg59Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2231G>C
  hgvsp: ENSP00000434417.1:p.Arg744Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1477G>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.176G>C
  hgvsp: ENSP00000432818.1:p.Arg59Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.176G>C
  hgvsp: ENSP00000436309.1:p.Arg59Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.813G>C
  hgvsp: ENSP00000436389.1:p.Arg272Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.560G>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2231G>C
  hgvsp: ENSP00000337397.4:p.Arg744Pro
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4722
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg59Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

16-81213279-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213279
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213279
    reference: chr 16
allele count: 2
allele frequency: 1.656122685568547e-5
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.176G>A
  hgvsp: ENSP00000436309.1:p.Arg59Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.176G>A
  hgvsp: ENSP00000432818.1:p.Arg59Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.560G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2231G>A
  hgvsp: ENSP00000434417.1:p.Arg744Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.176G>A
  hgvsp: ENSP00000434644.1:p.Arg59Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1477G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.813G>A
  hgvsp: ENSP00000436389.1:p.Arg272Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2231G>A
  hgvsp: ENSP00000337397.4:p.Arg744Gln
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4960
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg59Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-81213280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213280
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213280
    reference: chr 16
allele count: 759
allele frequency: 6.284881506384247e-3
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.175C>T
  hgvsp: ENSP00000434644.1:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.175C>T
  hgvsp: ENSP00000432818.1:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2230C>T
  hgvsp: ENSP00000434417.1:p.Arg744Trp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.812C>T
  hgvsp: ENSP00000436389.1:p.Arg272Trp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.175C>T
  hgvsp: ENSP00000436309.1:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2230C>T
  hgvsp: ENSP00000337397.4:p.Arg744Trp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1476C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.559C>T
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 11005
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 6.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 5.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 5.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25181
  bin: 9.75e1
  variant carriers: 747
genotype quality: GenotypeQuality
  all individuals: 5615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg59Trp
num of homozygotes: 12
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

16-81213280-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213280
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213280
    reference: chr 16
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.175C>A
  hgvsp: ENST00000527937.1:c.175C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.175C>A
  hgvsp: ENST00000533478.1:c.175C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.175C>A
  hgvsp: ENST00000531391.1:c.175C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2230C>A
  hgvsp: ENST00000337114.4:c.2230C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2230C>A
  hgvsp: ENST00000525539.1:c.2230C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.812C>A
  hgvsp: ENST00000526632.1:c.812C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.559C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1476C>A
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4941
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg59Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

16-81213282-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213282
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213282
    reference: chr 16
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.173C>T
  hgvsp: ENSP00000432818.1:p.Ser58Phe
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1474C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2228C>T
  hgvsp: ENSP00000434417.1:p.Ser743Phe
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.810C>T
  hgvsp: ENSP00000436389.1:p.Ser271Phe
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.173C>T
  hgvsp: ENSP00000436309.1:p.Ser58Phe
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2228C>T
  hgvsp: ENSP00000337397.4:p.Ser743Phe
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.557C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.173C>T
  hgvsp: ENSP00000434644.1:p.Ser58Phe
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24766
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4754
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3056
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser58Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

16-81213283-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213283
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213283
    reference: chr 16
allele count: 4
allele frequency: 3.312135665076842e-5
allele num: 120768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2227T>C
  hgvsp: ENSP00000434417.1:p.Ser743Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2227T>C
  hgvsp: ENSP00000337397.4:p.Ser743Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.172T>C
  hgvsp: ENSP00000434644.1:p.Ser58Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.809T>C
  hgvsp: ENSP00000436389.1:p.Ser271Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.172T>C
  hgvsp: ENSP00000432818.1:p.Ser58Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.172T>C
  hgvsp: ENSP00000436309.1:p.Ser58Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.556T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1473T>C
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24765
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser58Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

16-81213293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213293
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213293
    reference: chr 16
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.546G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.799G>A
  hgvsp: ENST00000526632.1:c.799G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2217G>A
  hgvsp: ENST00000525539.1:c.2217G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2217G>A
  hgvsp: ENST00000337114.4:c.2217G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.162G>A
  hgvsp: ENST00000533478.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.162G>A
  hgvsp: ENST00000531391.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1463G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.162G>A
  hgvsp: ENST00000527937.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser54Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-81213294-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213294
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213294
    reference: chr 16
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.161C>A
  hgvsp: ENSP00000434644.1:p.Ser54Ter
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2216C>A
  hgvsp: ENSP00000434417.1:p.Ser739Ter
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.798C>A
  hgvsp: ENSP00000436389.1:p.Ser267Ter
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.545C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.161C>A
  hgvsp: ENSP00000436309.1:p.Ser54Ter
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2216C>A
  hgvsp: ENSP00000337397.4:p.Ser739Ter
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1462C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.161C>A
  hgvsp: ENSP00000432818.1:p.Ser54Ter
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4976
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4153
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser54Ter
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

16-81213302-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213302
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213302
    reference: chr 16
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.153G>A
  hgvsp: ENST00000527937.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2208G>A
  hgvsp: ENST00000525539.1:c.2208G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.153G>A
  hgvsp: ENST00000533478.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.153G>A
  hgvsp: ENST00000531391.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.537G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.790G>A
  hgvsp: ENST00000526632.1:c.790G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1454G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2208G>A
  hgvsp: ENST00000337114.4:c.2208G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10305
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4974
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu51Leu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

16-81213304-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213304
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213304
    reference: chr 16
allele count: 600
allele frequency: 4.968450340338848e-3
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.151T>C
  hgvsp: ENST00000533478.1:c.151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2206T>C
  hgvsp: ENST00000337114.4:c.2206T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.151T>C
  hgvsp: ENST00000527937.1:c.151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1452T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.151T>C
  hgvsp: ENST00000531391.1:c.151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.788T>C
  hgvsp: ENST00000526632.1:c.788T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2206T>C
  hgvsp: ENST00000525539.1:c.2206T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.535T>C
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 6.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 4.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 9.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 9992
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 5.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11082
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 5.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 9541
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5680
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4730
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Leu51Leu
num of homozygotes: 16
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-81213307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213307
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213307
    reference: chr 16
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.148C>T
  hgvsp: ENST00000527937.1:c.148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1449C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.785C>T
  hgvsp: ENST00000526632.1:c.785C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.148C>T
  hgvsp: ENST00000533478.1:c.148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.532C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2203C>T
  hgvsp: ENST00000337114.4:c.2203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.148C>T
  hgvsp: ENST00000531391.1:c.148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2203C>T
  hgvsp: ENST00000525539.1:c.2203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4172
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3069
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4767
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu50Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

16-81213308-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213308
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213308
    reference: chr 16
allele count: 9
allele frequency: 7.452428663696736e-5
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1448G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2202G>A
  hgvsp: ENST00000337114.4:c.2202G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.784G>A
  hgvsp: ENST00000526632.1:c.784G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2202G>A
  hgvsp: ENST00000525539.1:c.2202G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.147G>A
  hgvsp: ENST00000531391.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.531G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.147G>A
  hgvsp: ENST00000527937.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.147G>A
  hgvsp: ENST00000533478.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5748
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu49Leu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

16-81213311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213311
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213311
    reference: chr 16
allele count: 3
allele frequency: 2.484142887898912e-5
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.144G>A
  hgvsp: ENST00000527937.1:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2199G>A
  hgvsp: ENST00000525539.1:c.2199G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.528G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1445G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.144G>A
  hgvsp: ENST00000531391.1:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2199G>A
  hgvsp: ENST00000337114.4:c.2199G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.144G>A
  hgvsp: ENST00000533478.1:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.781G>A
  hgvsp: ENST00000526632.1:c.781G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10412
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr48Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

16-81213312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213312
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213312
    reference: chr 16
allele count: 2
allele frequency: 1.656122685568547e-5
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.143C>T
  hgvsp: ENSP00000436309.1:p.Thr48Met
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.780C>T
  hgvsp: ENSP00000436389.1:p.Thr261Met
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1444C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.527C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2198C>T
  hgvsp: ENSP00000434417.1:p.Thr733Met
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.143C>T
  hgvsp: ENSP00000434644.1:p.Thr48Met
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2198C>T
  hgvsp: ENSP00000337397.4:p.Thr733Met
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.143C>T
  hgvsp: ENSP00000432818.1:p.Thr48Met
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5942
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24502
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr48Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD

16-81213313-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213313
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213313
    reference: chr 16
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.142A>G
  hgvsp: ENSP00000436309.1:p.Thr48Ala
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.142A>G
  hgvsp: ENSP00000432818.1:p.Thr48Ala
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2197A>G
  hgvsp: ENSP00000434417.1:p.Thr733Ala
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2197A>G
  hgvsp: ENSP00000337397.4:p.Thr733Ala
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1443A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.779A>G
  hgvsp: ENSP00000436389.1:p.Thr261Ala
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.526A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.142A>G
  hgvsp: ENSP00000434644.1:p.Thr48Ala
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24501
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2651
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4766
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10398
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr48Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

16-81213315-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213315
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213315
    reference: chr 16
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2195C>A
  hgvsp: ENSP00000337397.4:p.Ser732Tyr
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1441C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.524C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.140C>A
  hgvsp: ENSP00000436309.1:p.Ser47Tyr
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.140C>A
  hgvsp: ENSP00000434644.1:p.Ser47Tyr
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2195C>A
  hgvsp: ENSP00000434417.1:p.Ser732Tyr
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.140C>A
  hgvsp: ENSP00000432818.1:p.Ser47Tyr
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.777C>A
  hgvsp: ENSP00000436389.1:p.Ser260Tyr
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3070
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4999
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10404
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5750
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser47Tyr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

16-81213318-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213318
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213318
    reference: chr 16
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.137C>A
  hgvsp: ENSP00000434644.1:p.Thr46Asn
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.137C>A
  hgvsp: ENSP00000432818.1:p.Thr46Asn
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2192C>A
  hgvsp: ENSP00000337397.4:p.Thr731Asn
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1438C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.774C>A
  hgvsp: ENSP00000436389.1:p.Thr259Asn
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.521C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2192C>A
  hgvsp: ENSP00000434417.1:p.Thr731Asn
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.137C>A
  hgvsp: ENSP00000436309.1:p.Thr46Asn
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24497
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr46Asn
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS

16-81213320-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213320
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213320
    reference: chr 16
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.135C>G
  hgvsp: ENSP00000434644.1:p.Asn45Lys
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1436C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.135C>G
  hgvsp: ENSP00000436309.1:p.Asn45Lys
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2190C>G
  hgvsp: ENSP00000434417.1:p.Asn730Lys
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.519C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.772C>G
  hgvsp: ENSP00000436389.1:p.Asn258Lys
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2190C>G
  hgvsp: ENSP00000337397.4:p.Asn730Lys
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.135C>G
  hgvsp: ENSP00000432818.1:p.Asn45Lys
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4764
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5744
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn45Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

16-81213322-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213322
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213322
    reference: chr 16
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.133A>G
  hgvsp: ENSP00000434644.1:p.Asn45Asp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2188A>G
  hgvsp: ENSP00000337397.4:p.Asn730Asp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2188A>G
  hgvsp: ENSP00000434417.1:p.Asn730Asp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.517A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.133A>G
  hgvsp: ENSP00000436309.1:p.Asn45Asp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.770A>G
  hgvsp: ENSP00000436389.1:p.Asn258Asp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.133A>G
  hgvsp: ENSP00000432818.1:p.Asn45Asp
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1434A>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5005
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn45Asp
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-81213323-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213323
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213323
    reference: chr 16
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.132C>A
  hgvsp: ENSP00000434644.1:p.Ser44Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.132C>A
  hgvsp: ENSP00000432818.1:p.Ser44Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.516C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.132C>A
  hgvsp: ENSP00000436309.1:p.Ser44Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2187C>A
  hgvsp: ENSP00000434417.1:p.Ser729Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1433C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.769C>A
  hgvsp: ENSP00000436389.1:p.Ser257Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2187C>A
  hgvsp: ENSP00000337397.4:p.Ser729Arg
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24494
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser44Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

16-81213326-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213326
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213326
    reference: chr 16
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2184G>C
  hgvsp: ENSP00000434417.1:p.Gln728His
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.129G>C
  hgvsp: ENSP00000434644.1:p.Gln43His
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.129G>C
  hgvsp: ENSP00000436309.1:p.Gln43His
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.129G>C
  hgvsp: ENSP00000432818.1:p.Gln43His
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2184G>C
  hgvsp: ENSP00000337397.4:p.Gln728His
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.766G>C
  hgvsp: ENSP00000436389.1:p.Gln256His
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.513G>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1430G>C
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10363
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln43His
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

16-81213329-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213329
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213329
    reference: chr 16
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.126C>G
  hgvsp: ENST00000533478.1:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.763C>G
  hgvsp: ENST00000526632.1:c.763C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.126C>G
  hgvsp: ENST00000527937.1:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2181C>G
  hgvsp: ENST00000337114.4:c.2181C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1427C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2181C>G
  hgvsp: ENST00000525539.1:c.2181C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.126C>G
  hgvsp: ENST00000531391.1:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.510C>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4756
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4166
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4991
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu42Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

16-81213348-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213348
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213348
    reference: chr 16
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.744C>T
  hgvsp: ENSP00000436389.1:p.Pro249Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2162C>T
  hgvsp: ENSP00000434417.1:p.Pro721Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.491C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.107C>T
  hgvsp: ENSP00000436309.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.107C>T
  hgvsp: ENSP00000432818.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.107C>T
  hgvsp: ENSP00000434644.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1408C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2162C>T
  hgvsp: ENSP00000337397.4:p.Pro721Leu
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11015
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5622
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro36Leu
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-81213348-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213348
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213348
    reference: chr 16
allele count: 14
allele frequency: 1.159516316051019e-4
allele num: 120740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.491C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2162C>A
  hgvsp: ENSP00000337397.4:p.Pro721Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.107C>A
  hgvsp: ENSP00000434644.1:p.Pro36Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2162C>A
  hgvsp: ENSP00000434417.1:p.Pro721Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.107C>A
  hgvsp: ENSP00000432818.1:p.Pro36Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.744C>A
  hgvsp: ENSP00000436389.1:p.Pro249Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.107C>A
  hgvsp: ENSP00000436309.1:p.Pro36Gln
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1408C>A
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7957
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11015
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro36Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-81213349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213349
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213349
    reference: chr 16
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.106C>T
  hgvsp: ENSP00000432818.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2161C>T
  hgvsp: ENSP00000337397.4:p.Pro721Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.106C>T
  hgvsp: ENSP00000436309.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.490C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2161C>T
  hgvsp: ENSP00000434417.1:p.Pro721Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.743C>T
  hgvsp: ENSP00000436389.1:p.Pro249Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.106C>T
  hgvsp: ENSP00000434644.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1407C>T
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4940
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4722
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro36Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

16-81213355-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213355
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213355
    reference: chr 16
allele count: 16
allele frequency: 1.32520540683806e-4
allele num: 120736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1401T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.484T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.100T>C
  hgvsp: ENSP00000434644.1:p.Phe34Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.100T>C
  hgvsp: ENSP00000432818.1:p.Phe34Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.737T>C
  hgvsp: ENSP00000436389.1:p.Phe247Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2155T>C
  hgvsp: ENSP00000337397.4:p.Phe719Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2155T>C
  hgvsp: ENSP00000434417.1:p.Phe719Leu
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.100T>C
  hgvsp: ENSP00000436309.1:p.Phe34Leu
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7941
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe34Leu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

16-81213357-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213357
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213355
    reference: chr 16
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.96_97delAG
  hgvsp: ENSP00000432818.1:p.Gly33IlefsTer44
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.96_97delAG
  hgvsp: ENSP00000436309.1:p.Gly33IlefsTer56
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.733_734delAG
  hgvsp: ENSP00000436389.1:p.Gly246IlefsTer56
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2151_2152delAG
  hgvsp: ENSP00000337397.4:p.Gly718IlefsTer56
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.96_97delAG
  hgvsp: ENSP00000434644.1:p.Gly33IlefsTer56
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2151_2152delAG
  hgvsp: ENSP00000434417.1:p.Gly718IlefsTer56
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.480_481delAG
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1397_177+1398delAG
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5932
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly33IlefsTer44
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: CCT
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

16-81213361-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213361
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213361
    reference: chr 16
allele count: 2
allele frequency: 1.656643970644269e-5
allele num: 120726
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.731A>C
  hgvsp: ENST00000526632.1:c.731A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2149A>C
  hgvsp: ENST00000337114.4:c.2149A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2149A>C
  hgvsp: ENST00000525539.1:c.2149A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.478A>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1395A>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.94A>C
  hgvsp: ENST00000533478.1:c.94A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.94A>C
  hgvsp: ENST00000531391.1:c.94A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.94A>C
  hgvsp: ENST00000527937.1:c.94A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7924
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg32Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

16-81213365-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213365
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213365
    reference: chr 16
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2145A>G
  hgvsp: ENST00000525539.1:c.2145A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.474A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.90A>G
  hgvsp: ENST00000533478.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.727A>G
  hgvsp: ENST00000526632.1:c.727A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.90A>G
  hgvsp: ENST00000531391.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2145A>G
  hgvsp: ENST00000337114.4:c.2145A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.90A>G
  hgvsp: ENST00000527937.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1391A>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8978
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg30Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

16-81213372-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213372
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213372
    reference: chr 16
allele count: 19
allele frequency: 1.574333394097078e-4
allele num: 120686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.720C>G
  hgvsp: ENSP00000436389.1:p.Ala241Gly
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.83C>G
  hgvsp: ENSP00000434644.1:p.Ala28Gly
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.83C>G
  hgvsp: ENSP00000436309.1:p.Ala28Gly
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2138C>G
  hgvsp: ENSP00000434417.1:p.Ala713Gly
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2138C>G
  hgvsp: ENSP00000337397.4:p.Ala713Gly
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.467C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.83C>G
  hgvsp: ENSP00000432818.1:p.Ala28Gly
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1384C>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9445
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10055
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala28Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

16-81213377-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213377
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213377
    reference: chr 16
allele count: 7
allele frequency: 5.802387267904509e-5
allele num: 120640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2133G>A
  hgvsp: ENST00000337114.4:c.2133G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.462G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.78G>A
  hgvsp: ENST00000533478.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.78G>A
  hgvsp: ENST00000527937.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.78G>A
  hgvsp: ENST00000531391.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2133G>A
  hgvsp: ENST00000525539.1:c.2133G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.715G>A
  hgvsp: ENST00000526632.1:c.715G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1379G>A
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24408
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4641
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu26Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/16-81213378-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213378
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213378
    reference: chr 16
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.461T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2132T>G
  hgvsp: ENSP00000337397.4:p.Leu711Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2132T>G
  hgvsp: ENSP00000434417.1:p.Leu711Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.77T>G
  hgvsp: ENSP00000432818.1:p.Leu26Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1378T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.714T>G
  hgvsp: ENSP00000436389.1:p.Leu239Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.77T>G
  hgvsp: ENSP00000436309.1:p.Leu26Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.77T>G
  hgvsp: ENSP00000434644.1:p.Leu26Arg
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu26Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

16-81213378-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213378
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213378
    reference: chr 16
allele count: 98713
allele frequency: 8.196303430867847e-1
allele num: 120436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.77T>C
  hgvsp: ENSP00000436309.1:p.Leu26Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2132T>C
  hgvsp: ENSP00000434417.1:p.Leu711Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.77T>C
  hgvsp: ENSP00000434644.1:p.Leu26Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2132T>C
  hgvsp: ENSP00000337397.4:p.Leu711Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.77T>C
  hgvsp: ENSP00000432818.1:p.Leu26Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.714T>C
  hgvsp: ENSP00000436389.1:p.Leu239Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1378T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.461T>C
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 404
genotype depth: GenotypeDepth
  all individuals: 8584
  bin: 3.25e1
  variant carriers: 8105
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.25e1
  variant carriers: 1241
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 3.75e1
  variant carriers: 8671
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 2.75e1
  variant carriers: 6165
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 6.25e1
  variant carriers: 2361
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.75e1
  variant carriers: 1185
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.25e1
  variant carriers: 598
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 280
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 5.25e1
  variant carriers: 4552
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 4.25e1
  variant carriers: 7680
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.75e1
  variant carriers: 836
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 5.75e1
  variant carriers: 3294
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 4.75e1
  variant carriers: 6218
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.25e1
  variant carriers: 297
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 2.25e1
  variant carriers: 3366
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 6.75e1
  variant carriers: 1657
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 1184
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 5.25e1
  variant carriers: 505
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 4.75e1
  variant carriers: 353
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 194
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.75e1
  variant carriers: 435
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 7.75e1
  variant carriers: 1607
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 6.25e1
  variant carriers: 906
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 27
hgvs: p.Leu26Pro
num of homozygotes: 40736
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

16-81213380-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213380
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213380
    reference: chr 16
allele count: 1
allele frequency: 8.368761088608442e-6
allele num: 119492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2130C>T
  hgvsp: ENST00000525539.1:c.2130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2130C>T
  hgvsp: ENST00000337114.4:c.2130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.75C>T
  hgvsp: ENST00000527937.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.459C>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.712C>T
  hgvsp: ENST00000526632.1:c.712C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.75C>T
  hgvsp: ENST00000531391.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.75C>T
  hgvsp: ENST00000533478.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1376C>T
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4313
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu25Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

16-81213384-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213384
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213384
    reference: chr 16
allele count: 1
allele frequency: 8.376331836762046e-6
allele num: 119384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2126C>G
  hgvsp: ENSP00000434417.1:p.Pro709Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.71C>G
  hgvsp: ENSP00000432818.1:p.Pro24Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.71C>G
  hgvsp: ENSP00000434644.1:p.Pro24Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.71C>G
  hgvsp: ENSP00000436309.1:p.Pro24Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.708C>G
  hgvsp: ENSP00000436389.1:p.Pro237Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.455C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2126C>G
  hgvsp: ENSP00000337397.4:p.Pro709Arg
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1372C>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro24Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

16-81213384-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213384
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213384
    reference: chr 16
allele count: 5
allele frequency: 4.188165918381023e-5
allele num: 119384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.708C>A
  hgvsp: ENSP00000436389.1:p.Pro237His
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.71C>A
  hgvsp: ENSP00000436309.1:p.Pro24His
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2126C>A
  hgvsp: ENSP00000337397.4:p.Pro709His
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.71C>A
  hgvsp: ENSP00000432818.1:p.Pro24His
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.71C>A
  hgvsp: ENSP00000434644.1:p.Pro24His
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1372C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.455C>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2126C>A
  hgvsp: ENSP00000434417.1:p.Pro709His
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10964
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro24His
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

16-81213384-GGCTCAGCCTGAAAGACAGGATGGCCCAGGGCTGCTGAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213384
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213346
    reference: chr 16
allele count: 2
allele frequency: 1.675266367352409e-5
allele num: 119384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24442
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: GGCTCAGCCTGAAAGACAGGATGGCCCAGGGCTGCTGAC
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

16-81213386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213386
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213386
    reference: chr 16
allele count: 1
allele frequency: 8.378296859814337e-6
allele num: 119356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2124G>A
  hgvsp: ENST00000525539.1:c.2124G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.453G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.69G>A
  hgvsp: ENST00000531391.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.69G>A
  hgvsp: ENST00000533478.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2124G>A
  hgvsp: ENST00000337114.4:c.2124G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.69G>A
  hgvsp: ENST00000527937.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.706G>A
  hgvsp: ENST00000526632.1:c.706G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1370G>A
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24193
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28372
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu23Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

16-81213389-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213389
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213389
    reference: chr 16
allele count: 598
allele frequency: 5.014843265182899e-3
allele num: 119246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1367T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.703T>C
  hgvsp: ENST00000526632.1:c.703T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.66T>C
  hgvsp: ENST00000531391.1:c.66T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2121T>C
  hgvsp: ENST00000337114.4:c.2121T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.66T>C
  hgvsp: ENST00000533478.1:c.66T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2121T>C
  hgvsp: ENST00000525539.1:c.2121T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.450T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.66T>C
  hgvsp: ENST00000527937.1:c.66T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 4.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 2.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 10568
  bin: 3.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 23129
  bin: 2.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 1.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26907
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4710
  bin: 9.75e1
  variant carriers: 571
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: c.66T>C
num of homozygotes: 15
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/16-81213391-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213391
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213391
    reference: chr 16
allele count: 1
allele frequency: 8.391232839928842e-6
allele num: 119172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.448G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1365G>T
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2119G>T
  hgvsp: ENSP00000434417.1:p.Ala707Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.64G>T
  hgvsp: ENSP00000436309.1:p.Ala22Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.64G>T
  hgvsp: ENSP00000434644.1:p.Ala22Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2119G>T
  hgvsp: ENSP00000337397.4:p.Ala707Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.64G>T
  hgvsp: ENSP00000432818.1:p.Ala22Ser
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.701G>T
  hgvsp: ENSP00000436389.1:p.Ala235Ser
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala22Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

16-81213391-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213391
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213391
    reference: chr 16
allele count: 1
allele frequency: 8.391232839928842e-6
allele num: 119172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2119G>C
  hgvsp: ENSP00000434417.1:p.Ala707Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.64G>C
  hgvsp: ENSP00000432818.1:p.Ala22Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2119G>C
  hgvsp: ENSP00000337397.4:p.Ala707Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.64G>C
  hgvsp: ENSP00000436309.1:p.Ala22Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.64G>C
  hgvsp: ENSP00000434644.1:p.Ala22Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.701G>C
  hgvsp: ENSP00000436389.1:p.Ala235Pro
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1365G>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.448G>C
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10418
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala22Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

16-81213392-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213392
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213392
    reference: chr 16
allele count: 1
allele frequency: 8.392077878482712e-6
allele num: 119160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2119-1G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.701-1G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.64-1G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2119-1G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.64-1G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.448-1G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1364G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.64-1G>A
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22711
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26903
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
hgvs: c.64-1G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-81213398-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213398
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213398
    reference: chr 16
allele count: 1
allele frequency: 8.407035006893769e-6
allele num: 118948
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.64-7C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.448-7C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.64-7C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2119-7C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2119-7C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.701-7C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.64-7C>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1358C>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9979
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3459
  bin: 2.25e1
  variant carriers: 0
hgvs: c.64-7C>G
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

16-81213404-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213404
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213404
    reference: chr 16
allele count: 2
allele frequency: 1.685175511029474e-5
allele num: 118682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.64-13T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.448-13T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2119-13T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.64-13T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.701-13T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.64-13T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2119-13T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1352T>C
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3872
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4169
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-81213405-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213405
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213405
    reference: chr 16
allele count: 1
allele frequency: 8.426587569098018e-6
allele num: 118672
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.701-14A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2119-14A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.64-14A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.64-14A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2119-14A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1351A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.64-14A>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.448-14A>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-81213421-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213421
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213421
    reference: chr 16
allele count: 1
allele frequency: 8.526457597926366e-6
allele num: 117282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.701-30T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2119-30T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.64-30T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.448-30T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.64-30T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1335T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2119-30T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.64-30T>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13566
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-81213422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213422
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213422
    reference: chr 16
allele count: 94996
allele frequency: 8.131687524610091e-1
allele num: 116822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1334G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2119-31G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.64-31G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.701-31G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2119-31G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.64-31G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.448-31G>A
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.64-31G>A
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.75e1
  variant carriers: 3512
genotype depth: GenotypeDepth
  all individuals: 13844
  bin: 2.25e1
  variant carriers: 13448
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 10930
  bin: 2.75e1
  variant carriers: 10283
genotype depth: GenotypeDepth
  all individuals: 12652
  bin: 1.75e1
  variant carriers: 12177
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 3.25e1
  variant carriers: 6417
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 7.5e0
  variant carriers: 1149
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 1.25e1
  variant carriers: 6008
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 511
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.75e1
  variant carriers: 939
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 318
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 4.25e1
  variant carriers: 1823
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 7.25e1
  variant carriers: 1704
genotype quality: GenotypeQuality
  all individuals: 4568
  bin: 6.25e1
  variant carriers: 3830
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 3.75e1
  variant carriers: 2178
genotype quality: GenotypeQuality
  all individuals: 3887
  bin: 6.75e1
  variant carriers: 3684
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 4.25e1
  variant carriers: 1491
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.75e1
  variant carriers: 1202
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 1.75e1
  variant carriers: 302
num of homozygotes: 38901
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

16-81213426-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213426
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213426
    reference: chr 16
allele count: 1
allele frequency: 8.899172376968941e-6
allele num: 112370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.701-35T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.448-35T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1330T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.64-35T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2119-35T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.64-35T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2119-35T>C
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.64-35T>C
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13823
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3732
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-81213432-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81213432
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 81213432
    reference: chr 16
allele count: 45
allele frequency: 4.044216770018873e-4
allele num: 111270
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434644
  ensembl transcript: ENST00000533478
  gene symbol: PKD1L2
  hgvsc: ENST00000533478.1:c.64-41T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436389
  ensembl transcript: ENST00000526632
  gene symbol: PKD1L2
  hgvsc: ENST00000526632.1:c.701-41T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000337397
  ensembl transcript: ENST00000337114
  gene symbol: PKD1L2
  hgvsc: ENST00000337114.4:c.2119-41T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000434417
  ensembl transcript: ENST00000525539
  gene symbol: PKD1L2
  hgvsc: ENST00000525539.1:c.2119-41T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000299598
  gene symbol: PKD1L2
  hgvsc: ENST00000299598.7:n.448-41T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl transcript: ENST00000529791
  gene symbol: PKD1L2
  hgvsc: ENST00000529791.1:n.177+1324T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000432818
  ensembl transcript: ENST00000527937
  gene symbol: PKD1L2
  hgvsc: ENST00000527937.1:c.64-41T>G
  variant of: http://identifiers.org/hgnc/21715
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166473
  ensembl protein: ENSP00000436309
  ensembl transcript: ENST00000531391
  gene symbol: PKD1L2
  hgvsc: ENST00000531391.1:c.64-41T>G
  variant of: http://identifiers.org/hgnc/21715
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16768
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 14653
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 10304
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4893
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8002
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7308
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.369112814895947e-4
allele num: 7304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 1.0073e1

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

VQSLOD
type: SiteQuality
SIO_000300: -1.163e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.06e0

DP
type: SiteQuality
SIO_000300: 9.62635e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

GenotypeQuality
all individuals: 2617
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9303
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4872
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

FS
type: SiteQuality
SIO_000300: 3.212e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 2.489986e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: -7.064e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.127e0

QD
type: SiteQuality
SIO_000300: 7.88e0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4872
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25090
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5528
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.354e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

QD
type: SiteQuality
SIO_000300: 5.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.832e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

DP
type: SiteQuality
SIO_000300: 2.490878e6

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25101
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4928
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497211728728189e-5
allele num: 66708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

MQ
type: SiteQuality
SIO_000300: 6.027e1

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 2.496157e6

FS
type: SiteQuality
SIO_000300: 3.821e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
SIO_000300: 1.584e1

GenotypeQuality
all individuals: 10040
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4694
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.665e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.133e0

QD
type: SiteQuality
SIO_000300: 9.34e0

MQ
type: SiteQuality
SIO_000300: 5.825e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.032e0

DP
type: SiteQuality
SIO_000300: 2.496351e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.502e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 8.161599673536013e-4
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.497834e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

FS
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.093e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

DP
type: SiteQuality
SIO_000300: 2.498006e6

MQ
type: SiteQuality
SIO_000300: 5.881e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 3.229e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.058999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

DP
type: SiteQuality
SIO_000300: 2.498503e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 5.885e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.56e-1

FS
type: SiteQuality
SIO_000300: 4.187e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 37

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 31
allele frequency: 3.162619873495205e-3
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.493780162465154e-5
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.819e0

FS
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.49997e6

QD
type: SiteQuality
SIO_000300: 1.274e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 117

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.348920863309352e-4
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 103
allele frequency: 1.050805957967762e-2
allele num: 9802
num of homozygotes: 2

Latino
type: Population
allele count: 5
allele frequency: 4.319281271596407e-4
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

QD
type: SiteQuality
SIO_000300: 1.296e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.50216e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.87e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.37e-1

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.75e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.498403e6

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 1.218e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 1.551e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.458e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.191e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: 8.34e-1

DP
type: SiteQuality
SIO_000300: 2.498471e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3038
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 3.191e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.498471e6

QD
type: SiteQuality
SIO_000300: 1.458e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10155
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.450581395348837e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.4e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.498709e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.81e0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.663e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.505e0

DP
type: SiteQuality
SIO_000300: 2.498461e6

FS
type: SiteQuality
SIO_000300: 4.93e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
all individuals: 25059
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4723
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.406e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 3.549e0

VQSLOD
type: SiteQuality
SIO_000300: -2.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.545e0

DP
type: SiteQuality
SIO_000300: 2.49848e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4141
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.843e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

QD
type: SiteQuality
SIO_000300: 1.129e1

MQRankSum
type: SiteQuality
SIO_000300: -3.09e-1

DP
type: SiteQuality
SIO_000300: 2.498477e6

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.040399918384003e-4
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.362e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.314e1

DP
type: SiteQuality
SIO_000300: 2.498515e6

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.498641e6

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.695e0

VQSLOD
type: SiteQuality
SIO_000300: 3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 14

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.209398756046994e-3
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e0

DP
type: SiteQuality
SIO_000300: 2.498987e6

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.204e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.990380293086398e-5
allele num: 66738
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.498941e6

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

QD
type: SiteQuality
SIO_000300: 1.223e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 2.498941e6

QD
type: SiteQuality
SIO_000300: 1.223e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

GenotypeQuality
all individuals: 2640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5639
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25054
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4138
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4722
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.498941e6

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

QD
type: SiteQuality
SIO_000300: 1.223e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

GenotypeQuality
all individuals: 4702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 17
allele frequency: 1.468555632342778e-3
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 2.180232558139535e-3
allele num: 16512
num of homozygotes: 1

African
type: Population
allele count: 538
allele frequency: 5.489795918367347e-2
allele num: 9800
num of homozygotes: 10

Other
type: Population
allele count: 3
allele frequency: 3.333333333333334e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 156
allele frequency: 2.337428828288882e-3
allele num: 66740
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.360749924402782e-3
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.85e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

DP
type: SiteQuality
SIO_000300: 2.52236e6

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.336e1

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 2.52236e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.85e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

GenotypeQuality
all individuals: 4984
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10319
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 2.488615e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.409e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.021e1

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10308
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4984
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.080799836768007e-4
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.064e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.75e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 8.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

QD
type: SiteQuality
SIO_000300: 1.339e1

DP
type: SiteQuality
SIO_000300: 2.488731e6

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10314
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4977
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4756
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24764
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 5.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.488351e6

QD
type: SiteQuality
SIO_000300: 1.237e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24764
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4754
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.391e0

DP
type: SiteQuality
SIO_000300: 2.488381e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 7.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5691
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24763
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4752
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.693e0

QD
type: SiteQuality
SIO_000300: 2.708e1

FS
type: SiteQuality
SIO_000300: 1.2982e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: -1.966e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 2.48831e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2636
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4958
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variant carriers: 0

GenotypeQuality
all individuals: 4131
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 3047
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variant carriers: 0

GenotypeQuality
all individuals: 24861
bin: 9.75e1
variant carriers: 582

GenotypeQuality
all individuals: 10298
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.554941257774706e-3
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
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allele count: 561
allele frequency: 5.724489795918367e-2
allele num: 9800
num of homozygotes: 16

Other
type: Population
allele count: 4
allele frequency: 4.444444444444444e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.947915730168719e-4
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

DP
type: SiteQuality
SIO_000300: 2.501063e6

FS
type: SiteQuality
SIO_000300: 5.42e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

QD
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SIO_000300: 1.453e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.17e0

ClippingRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
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DP
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SIO_000300: 2.479018e6

VQSLOD
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SIO_000300: 3.7e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.34855704396296e-4
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.541e1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

FS
type: SiteQuality
SIO_000300: 1.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.845e0

VQSLOD
type: SiteQuality
SIO_000300: 9.86e-1

DP
type: SiteQuality
SIO_000300: 2.479198e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.725e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.326e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

DP
type: SiteQuality
SIO_000300: 2.478793e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.334e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.478714e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.252e0

FS
type: SiteQuality
SIO_000300: 2.358e0

QD
type: SiteQuality
SIO_000300: 1.181e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.266e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele num: 900
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
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allele num: 11576
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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FS
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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Latino
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Other
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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QD
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FS
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InbreedingCoeff
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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South Asian
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European (Finnish)
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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DP
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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Other
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Latino
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South Asian
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African
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European (Non-Finnish)
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QD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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FS
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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allele frequency: 0.0e0
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East Asian
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Latino
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European (Non-Finnish)
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allele num: 66722
num of homozygotes: 0

European (Finnish)
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Other
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ReadPosRankSum
type: SiteQuality
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DP
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MQRankSum
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QD
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FS
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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allele num: 11572
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East Asian
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Other
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European (Finnish)
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South Asian
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ClippingRankSum
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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ReadPosRankSum
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DP
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VQSLOD
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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MQ
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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QD
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BaseQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.58e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.31e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 2.461917e6

FS
type: SiteQuality
SIO_000300: 1.363e0

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 24416
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4838
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.021033285685113e-4
allele num: 9794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 1.765e0

DP
type: SiteQuality
SIO_000300: 2.455118e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4660
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.186721991701245e-4
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.649027074026325e-4
allele num: 66706
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

QD
type: SiteQuality
SIO_000300: 1.286e1

DP
type: SiteQuality
SIO_000300: 2.445986e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6779
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.636804461146806e-4
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 1.63e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

FS
type: SiteQuality
SIO_000300: 5.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.363e0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.97e-1

DP
type: SiteQuality
SIO_000300: 2.443612e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

GenotypeQuality
all individuals: 46247
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 524
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variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 2.854e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

FS
type: SiteQuality
SIO_000300: 1.292e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.39e-2

DP
type: SiteQuality
SIO_000300: 2.616192e6

GenotypeQuality
all individuals: 1613
bin: 6.75e1
variant carriers: 1240

GenotypeQuality
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bin: 1.75e1
variant carriers: 40

GenotypeQuality
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bin: 2.75e1
variant carriers: 65

GenotypeQuality
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bin: 7.5e0
variant carriers: 41

GenotypeQuality
all individuals: 89
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variant carriers: 51

GenotypeQuality
all individuals: 2305
bin: 9.25e1
variant carriers: 2279

GenotypeQuality
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bin: 3.25e1
variant carriers: 87

GenotypeQuality
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variant carriers: 192

GenotypeQuality
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variant carriers: 29

GenotypeQuality
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variant carriers: 2039

GenotypeQuality
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bin: 8.75e1
variant carriers: 1085

GenotypeQuality
all individuals: 925
bin: 7.25e1
variant carriers: 823

GenotypeQuality
all individuals: 46247
bin: 9.75e1
variant carriers: 46134

European (Finnish)
type: Population
allele count: 5655
allele frequency: 8.565586186004241e-1
allele num: 6602
num of homozygotes: 2428

Other
type: Population
allele count: 763
allele frequency: 8.477777777777777e-1
allele num: 900
num of homozygotes: 320

Latino
type: Population
allele count: 9098
allele frequency: 7.908553546592489e-1
allele num: 11504
num of homozygotes: 3581

East Asian
type: Population
allele count: 8294
allele frequency: 9.624042701322812e-1
allele num: 8618
num of homozygotes: 3989

South Asian
type: Population
allele count: 12389
allele frequency: 7.518509527855323e-1
allele num: 16478
num of homozygotes: 4728

African
type: Population
allele count: 6970
allele frequency: 7.137005938971943e-1
allele num: 9766
num of homozygotes: 2488

European (Non-Finnish)
type: Population
allele count: 55544
allele frequency: 8.343949044585988e-1
allele num: 66568
num of homozygotes: 23202

QD
type: SiteQuality
SIO_000300: 2.854e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.39e-2

FS
type: SiteQuality
SIO_000300: 1.292e0

DP
type: SiteQuality
SIO_000300: 2.616192e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

GenotypeQuality
all individuals: 2799
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8674
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2371
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GenotypeQuality
all individuals: 283
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.11545988258317e-5
allele num: 16352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.725022e6

FS
type: SiteQuality
SIO_000300: 2.951e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.513e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

GenotypeQuality
all individuals: 1671
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2347
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514279657167086e-5
allele num: 66038
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

DP
type: SiteQuality
SIO_000300: 1.705471e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.316e0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

QD
type: SiteQuality
SIO_000300: 7.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

GenotypeQuality
all individuals: 1115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 8465
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
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GenotypeQuality
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GenotypeQuality
all individuals: 4317
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 28213
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GenotypeQuality
all individuals: 2347
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.626050420168067e-4
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514279657167086e-5
allele num: 66038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.705471e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 1.316e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.29e0

GenotypeQuality
all individuals: 475
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2349
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4317
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2347
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223990208078335e-4
allele num: 16340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

QD
type: SiteQuality
SIO_000300: 7.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

DP
type: SiteQuality
SIO_000300: 1.705471e6

FS
type: SiteQuality
SIO_000300: 1.316e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
all individuals: 716
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175364362952515e-4
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.732e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.700149e6

VQSLOD
type: SiteQuality
SIO_000300: -2.697e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.89e0

QD
type: SiteQuality
SIO_000300: 3.061e1

GenotypeQuality
all individuals: 740
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 890
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 654
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3417
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 526
bin: 4.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.970413483691039e-4
allele num: 65976
num of homozygotes: 0

African
type: Population
allele count: 559
allele frequency: 5.77240809582817e-2
allele num: 9684
num of homozygotes: 15

Other
type: Population
allele count: 4
allele frequency: 4.514672686230248e-3
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.577563540753725e-3
allele num: 11410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.089280197713933e-4
allele num: 6474
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.225790634959549e-4
allele num: 16316
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.680705e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

QD
type: SiteQuality
SIO_000300: 1.346e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.93e-2

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
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variant carriers: 0

GenotypeQuality
all individuals: 4182
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2845
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516254245511887e-5
allele num: 65952
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

QD
type: SiteQuality
SIO_000300: 1.329e1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 3.06e0

DP
type: SiteQuality
SIO_000300: 1.669359e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

GenotypeQuality
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 422
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GenotypeQuality
all individuals: 888
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GenotypeQuality
all individuals: 8193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4182
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516254245511887e-5
allele num: 65952
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

FS
type: SiteQuality
SIO_000300: 3.06e0

DP
type: SiteQuality
SIO_000300: 1.669359e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.329e1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 3366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2936
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4182
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 885
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variant carriers: 0

GenotypeQuality
all individuals: 8162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
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variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516254245511887e-5
allele num: 65952
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.444e1

DP
type: SiteQuality
SIO_000300: 1.664097e6

FS
type: SiteQuality
SIO_000300: 3.96e0

MQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.189e0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

MQ
type: SiteQuality
SIO_000300: 5.905e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 3255
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1199
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518925815663163e-5
allele num: 65836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.626197e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -3.107e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
all individuals: 768
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21848
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 9.25e1
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GenotypeQuality
all individuals: 2162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4130
bin: 3.25e1
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GenotypeQuality
all individuals: 6520
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3054
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.760873393203029e-4
allele num: 11358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65712
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

DP
type: SiteQuality
SIO_000300: 1.580638e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

VQSLOD
type: SiteQuality
SIO_000300: -2.055e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
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GenotypeQuality
all individuals: 3048
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
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variant carriers: 0

GenotypeQuality
all individuals: 20962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3781
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4168
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1198
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.043623460655395e-4
allele num: 9582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.572873e6

QD
type: SiteQuality
SIO_000300: 9.18e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.651e0

GenotypeQuality
all individuals: 4162
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2880
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4998
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5096
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5811
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5781
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4713
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540499738115044e-5
allele num: 64914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

DP
type: SiteQuality
SIO_000300: 1.487521e6

VQSLOD
type: SiteQuality
SIO_000300: 1.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.052e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.35e-1

GenotypeQuality
all individuals: 2087
bin: 5.75e1
variant carriers: 2048

GenotypeQuality
all individuals: 293
bin: 2.5e0
variant carriers: 107

GenotypeQuality
all individuals: 817
bin: 2.25e1
variant carriers: 572

GenotypeQuality
all individuals: 182
bin: 1.25e1
variant carriers: 160

GenotypeQuality
all individuals: 1654
bin: 3.25e1
variant carriers: 1436

GenotypeQuality
all individuals: 3832
bin: 5.25e1
variant carriers: 3774

GenotypeQuality
all individuals: 3140
bin: 7.75e1
variant carriers: 3064

GenotypeQuality
all individuals: 1902
bin: 9.25e1
variant carriers: 1882

GenotypeQuality
all individuals: 2568
bin: 8.25e1
variant carriers: 2515

GenotypeQuality
all individuals: 3421
bin: 4.75e1
variant carriers: 3356

GenotypeQuality
all individuals: 710
bin: 2.75e1
variant carriers: 561

GenotypeQuality
all individuals: 23901
bin: 9.75e1
variant carriers: 23781

African
type: Population
allele count: 6171
allele frequency: 6.542620865139949e-1
allele num: 9432
num of homozygotes: 2015

South Asian
type: Population
allele count: 12135
allele frequency: 7.504638218923934e-1
allele num: 16170
num of homozygotes: 4618

European (Finnish)
type: Population
allele count: 5451
allele frequency: 8.557299843014129e-1
allele num: 6370
num of homozygotes: 2337

Latino
type: Population
allele count: 8650
allele frequency: 7.865066375704673e-1
allele num: 10998
num of homozygotes: 3368

Other
type: Population
allele count: 735
allele frequency: 8.428899082568807e-1
allele num: 872
num of homozygotes: 307

East Asian
type: Population
allele count: 8036
allele frequency: 9.610141114565893e-1
allele num: 8362
num of homozygotes: 3859

European (Non-Finnish)
type: Population
allele count: 53818
allele frequency: 8.328639078894425e-1
allele num: 64618
num of homozygotes: 22397

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

VQSLOD
type: SiteQuality
SIO_000300: 4.94e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

QD
type: SiteQuality
SIO_000300: 2.879e1

DP
type: SiteQuality
SIO_000300: 1.512984e6

GenotypeQuality
all individuals: 4182
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6546
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2598
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7364
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14872
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.370238246910434e-5
allele num: 15698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.114e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.555e0

MQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

VQSLOD
type: SiteQuality
SIO_000300: -7.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.247563e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1