12-78534145-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78534145
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78534145
    reference: chr 12
allele count: 1
allele frequency: 8.296276631047985e-6
allele num: 120536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4152+31G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4683+31G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4683+31G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.570+31G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1366+31G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4683+31G>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

12-78534151-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78534151
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78534151
    reference: chr 12
allele count: 1
allele frequency: 8.299306178003518e-6
allele num: 120492
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4683+37G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4683+37G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4683+37G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1366+37G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.570+37G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4152+37G>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5825
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-78534160-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78534160
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78534160
    reference: chr 12
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4683+46A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1366+46A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4683+46A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4152+46A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.570+46A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4683+46A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 441
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genotype quality: GenotypeQuality
  all individuals: 274
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3297
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genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

12-78534163-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78534163
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78534163
    reference: chr 12
allele count: 1
allele frequency: 8.304682179812978e-6
allele num: 120414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4683+49G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4152+49G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4683+49G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.570+49G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4683+49G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1366+49G>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3007
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

12-78537138-C-CGGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78537138
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78537141
    reference: chr 12
allele count: 2679
allele frequency: 2.59593023255814e-1
allele num: 10320
alternate allele: CGGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-3008_1367-3006dupTGG
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-3008_4684-3006dupTGG
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-3008_571-3006dupTGG
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-3008_4684-3006dupTGG
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4684-33_4684-31dupTGG
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4153-33_4153-31dupTGG
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 2.75e1
  variant carriers: 522
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 2.5e0
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.25e1
  variant carriers: 448
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 464
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 25
num of homozygotes: 399
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

12-78537139-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78537139
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78537139
    reference: chr 12
allele count: 1
allele frequency: 1.742767514813524e-4
allele num: 5738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4684-35G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-3010G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-3010G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4153-35G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-3010G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-3010G>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

12-78537181-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78537181
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78537181
    reference: chr 12
allele count: 153
allele frequency: 2.153716216216216e-2
allele num: 7104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-2968C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4160C>T
  hgvsp: ENSP00000266692.7:p.Ala1387Val
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-2968C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-2968C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4691C>T
  hgvsp: ENSP00000228327.6:p.Ala1564Val
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-2968C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.75e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala1564Val
num of homozygotes: 7
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

12-78537185-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78537185
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78537185
    reference: chr 12
allele count: 1
allele frequency: 1.526251526251526e-4
allele num: 6552
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-2964T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4164T>C
  hgvsp: ENST00000266692.7:c.4164T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-2964T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-2964T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4695T>C
  hgvsp: ENST00000228327.6:c.4695T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-2964T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly1565Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

12-78537204-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78537204
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78537204
    reference: chr 12
allele count: 1
allele frequency: 1.740341106856944e-4
allele num: 5746
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4176+7A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-2945A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-2945A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-2945A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-2945A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4707+7A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3332
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
hgvs: c.4707+7A>G
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

12-78537240-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78537240
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78537240
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 2032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4176+43G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4707+43G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-2909G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-2909G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-2909G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-2909G>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-78538792-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78538792
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78538792
    reference: chr 12
allele count: 11
allele frequency: 1.16673737802291e-3
allele num: 9428
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-1357A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4176+1595A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4707+1595A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-1357A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-1357A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-1357A>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

12-78538816-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78538816
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78538816
    reference: chr 12
allele count: 244
allele frequency: 2.520661157024793e-2
allele num: 9680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-1333T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-1333T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-1333T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4707+1619T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-1333T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4176+1619T>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 2.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 2.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3707
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 5
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/12-78538850-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78538850
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78538850
    reference: chr 12
allele count: 2
allele frequency: 2.204099625303064e-4
allele num: 9074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4707+1653C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-1299C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-1299C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-1299C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4176+1653C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-1299C>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

12-78538890-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78538890
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78538890
    reference: chr 12
allele count: 5
allele frequency: 8.91583452211127e-4
allele num: 5608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4707+1693A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-1259A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-1259A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-1259A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-1259A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4176+1693A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 6.25e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

12-78538897-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78538897
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78538897
    reference: chr 12
allele count: 2
allele frequency: 4.13393964448119e-4
allele num: 4838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4176+1700A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-1252A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-1252A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4707+1700A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-1252A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-1252A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 18
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genotype quality: GenotypeQuality
  all individuals: 89
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 250
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 171
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genotype quality: GenotypeQuality
  all individuals: 196
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-78538913-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78538913
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78538913
    reference: chr 12
allele count: 2
allele frequency: 5.871990604815032e-4
allele num: 3406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-1236A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-1236A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-1236A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4176+1716A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4707+1716A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-1236A>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

12-78540103-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540103
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540103
    reference: chr 12
allele count: 4
allele frequency: 4.918234353866962e-5
allele num: 81330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-46G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2519G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-46G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-46G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2519G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-46G>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7874
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3188
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 10609
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 6043
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

12-78540104-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540104
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540104
    reference: chr 12
allele count: 1
allele frequency: 1.222822764068576e-5
allele num: 81778
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-45A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2518A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2518A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-45A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-45A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-45A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
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genotype quality: GenotypeQuality
  all individuals: 888
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14945
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2864
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
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genotype quality: GenotypeQuality
  all individuals: 354
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genotype quality: GenotypeQuality
  all individuals: 5493
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genotype quality: GenotypeQuality
  all individuals: 11484
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genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

12-78540107-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540107
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540107
    reference: chr 12
allele count: 1
allele frequency: 1.219512195121951e-5
allele num: 82000
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2515A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2515A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-42A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9859
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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genotype depth: GenotypeDepth
  all individuals: 15038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 232
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genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 5273
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 536
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 623
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 149
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 331
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genotype quality: GenotypeQuality
  all individuals: 5945
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

12-78540115-TATAGTTAAAGTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540115
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540103
    reference: chr 12
allele count: 1
allele frequency: 1.204412969118852e-5
allele num: 83028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3726
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5072
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17421
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: TATAGTTAAAGTC
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

12-78540121-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540121
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540119
    reference: chr 12
allele count: 3
allele frequency: 3.540909305509655e-5
allele num: 84724
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-26_4684-25delAA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-26_1367-25delAA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-26_571-25delAA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2499_4708-2498delAA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-26_4684-25delAA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2499_4177-2498delAA
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2637
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18063
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: TAA
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

12-78540122-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540122
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540122
    reference: chr 12
allele count: 1
allele frequency: 1.174977675424167e-5
allele num: 85108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2500A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-27A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-27A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-27A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2500A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-27A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18063
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-78540127-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540127
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540127
    reference: chr 12
allele count: 2
allele frequency: 2.298269403139436e-5
allele num: 87022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-22C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-22C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2495C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-22C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-22C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2495C>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23678
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

12-78540127-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540127
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540127
    reference: chr 12
allele count: 1
allele frequency: 1.149134701569718e-5
allele num: 87022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2495C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4684-22C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2495C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4684-22C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.571-22C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1367-22C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27413
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

12-78540161-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540161
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540161
    reference: chr 12
allele count: 1
allele frequency: 1.068992794988562e-5
allele num: 93546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2461G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1379G>A
  hgvsp: ENSP00000446644.1:p.Ala461Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4696G>A
  hgvsp: ENSP00000381007.2:p.Ala1566Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4696G>A
  hgvsp: ENSP00000446132.2:p.Ala1566Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.583G>A
  hgvsp: ENSP00000448303.1:p.Ala195Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2461G>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24676
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3069
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala1566Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

12-78540166-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540166
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540166
    reference: chr 12
allele count: 1
allele frequency: 1.252536386182019e-5
allele num: 79838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2456T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.588T>C
  hgvsp: ENST00000550788.1:c.588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2456T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4701T>C
  hgvsp: ENST00000536525.2:c.4701T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1384T>C
  hgvsp: ENST00000552895.1:c.1384T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4701T>C
  hgvsp: ENST00000397909.2:c.4701T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12292
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His1567His
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

12-78540174-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540174
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540175
    reference: chr 12
allele count: 70
allele frequency: 6.970584134950509e-4
allele num: 100422
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2438dupA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2438dupA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+12dupA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+12dupA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+12dupA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+12dupA
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10535
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 10350
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9192
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 9.25e1
  variant carriers: 1
hgvs: c.4707+12dupA
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

12-78540174-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540174
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540173
    reference: chr 12
allele count: 69591
allele frequency: 6.929856007647727e-1
allele num: 100422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+12delA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2438delA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+12delA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+12delA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+12delA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2438delA
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 3.75e1
  variant carriers: 3083
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 9.75e1
  variant carriers: 1056
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 324
genotype depth: GenotypeDepth
  all individuals: 9192
  bin: 1.25e1
  variant carriers: 7981
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 2.75e1
  variant carriers: 6497
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 4.25e1
  variant carriers: 2101
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 7.5e0
  variant carriers: 3786
genotype depth: GenotypeDepth
  all individuals: 10535
  bin: 1.75e1
  variant carriers: 9827
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.75e1
  variant carriers: 1369
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.25e1
  variant carriers: 795
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.5e0
  variant carriers: 438
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.25e1
  variant carriers: 4713
genotype depth: GenotypeDepth
  all individuals: 10350
  bin: 2.25e1
  variant carriers: 8833
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 563
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 4.25e1
  variant carriers: 1385
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 1079
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 8.75e1
  variant carriers: 1312
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 2.75e1
  variant carriers: 1089
genotype quality: GenotypeQuality
  all individuals: 25835
  bin: 9.75e1
  variant carriers: 25672
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 5.75e1
  variant carriers: 1438
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 2.5e0
  variant carriers: 405
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 1.25e1
  variant carriers: 787
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 7.5e0
  variant carriers: 650
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 2.25e1
  variant carriers: 1378
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 8.25e1
  variant carriers: 1256
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 3.75e1
  variant carriers: 2085
hgvs: c.4707+12delA
num of homozygotes: 23048
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: TA
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

12-78540174-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540174
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540172
    reference: chr 12
allele count: 347
allele frequency: 3.455418135468324e-3
allele num: 100422
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+11_4707+12delAA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2439_4177-2438delAA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+11_1390+12delAA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+11_4707+12delAA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2439_4708-2438delAA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+11_594+12delAA
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9192
  bin: 1.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 3.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 2.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 10535
  bin: 1.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 10350
  bin: 2.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 2.5e0
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 1.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 2.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 3.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 3.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 7.5e0
  variant carriers: 22
hgvs: c.4707+11_4707+12delAA
num of homozygotes: 3
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: TAA
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

12-78540183-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540183
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540183
    reference: chr 12
allele count: 215
allele frequency: 2.31976003970566e-3
allele num: 92682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+11A>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2439A>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+11A>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+11A>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+11A>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2439A>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13146
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 10578
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16674
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 1.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 2.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 9.75e1
  variant carriers: 204
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17084
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 3
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-78540183-AAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540183
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540181
    reference: chr 12
allele count: 94
allele frequency: 1.014220668522475e-3
allele num: 92682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+14_1390+15delAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+14_594+15delAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2436_4708-2435delAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+14_4707+15delAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+14_4707+15delAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2436_4177-2435delAT
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 10578
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 16674
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13146
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 9.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: AAT
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/12-78540183-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540183
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540183
    reference: chr 12
allele count: 1
allele frequency: 1.078958158002633e-5
allele num: 92682
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+11A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+11A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+11A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2439A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+11A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2439A>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17084
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

12-78540184-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540184
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540183
    reference: chr 12
allele count: 2
allele frequency: 2.171034063524457e-5
allele num: 92122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2437delT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+13delT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+13delT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+13delT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2437delT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+13delT
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16740
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22719
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: AT
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-78540185-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540185
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540185
    reference: chr 12
allele count: 2
allele frequency: 2.188519029172959e-5
allele num: 91386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2437T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2437T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+13T>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12753
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17251
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2935
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 3144
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

12-78540187-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540187
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540187
    reference: chr 12
allele count: 1
allele frequency: 1.107370659107016e-5
allele num: 90304
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+15T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+15T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+15T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+15T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2435T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2435T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18494
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

12-78540191-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540191
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540191
    reference: chr 12
allele count: 1
allele frequency: 1.191355524315566e-5
allele num: 83938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+19A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+19A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+19A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2431A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+19A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2431A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21588
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12266
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10602
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3648
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

12-78540194-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540194
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540194
    reference: chr 12
allele count: 1
allele frequency: 1.190702991045914e-5
allele num: 83984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+22T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+22T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2428T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+22T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2428T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+22T>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11303
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5435
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

12-78540206-CTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540206
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540204
    reference: chr 12
allele count: 1
allele frequency: 1.351059230436662e-5
allele num: 74016
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+36_4707+37delAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2414_4177-2413delAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2414_4708-2413delAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+36_594+37delAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+36_4707+37delAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+36_1390+37delAT
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21603
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4396
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8093
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22657
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: CTA
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-78540218-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540218
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540218
    reference: chr 12
allele count: 2
allele frequency: 3.321486697445776e-5
allele num: 60214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+46G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+46G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+46G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+46G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2404G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2404G>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16410
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9025
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6049
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4841
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5686
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

12-78540223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78540223
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78540223
    reference: chr 12
allele count: 2
allele frequency: 3.468248187840322e-5
allele num: 57666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.594+51C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4707+51C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-2399C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-2399C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4707+51C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1390+51C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15556
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7539
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8696
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5683
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4911
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

12-78542569-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542569
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542569
    reference: chr 12
allele count: 1
allele frequency: 1.217404007693993e-5
allele num: 82142
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-53T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-53T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-53T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-53T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-53T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-53T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4495
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

12-78542585-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542585
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542585
    reference: chr 12
allele count: 2
allele frequency: 2.468587227529685e-5
allele num: 81018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-37A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-37A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-37A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-37A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-37A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-37A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18208
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17571
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3837
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5993
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
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genotype quality: GenotypeQuality
  all individuals: 1563
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genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

12-78542586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542586
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542586
    reference: chr 12
allele count: 1
allele frequency: 1.247007182761373e-5
allele num: 80192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-36C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-36C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-36C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-36C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-36C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-36C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17879
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5923
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4252
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

12-78542587-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542587
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542587
    reference: chr 12
allele count: 1
allele frequency: 1.25542973359781e-5
allele num: 79654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-35T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-35T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-35T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-35T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-35T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-35T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17505
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5841
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9488
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16571
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

12-78542588-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542588
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542588
    reference: chr 12
allele count: 2
allele frequency: 2.506579771901241e-5
allele num: 79790
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-34T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-34T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-34T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-34T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-34T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-34T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6297
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9805
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16493
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

12-78542593-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542593
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542593
    reference: chr 12
allele count: 1
allele frequency: 1.289989680082559e-5
allele num: 77520
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-29A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-29A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-29A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-29A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-29A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-29A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4968
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3836
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14015
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3244
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

12-78542594-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542594
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542594
    reference: chr 12
allele count: 38967
allele frequency: 3.832241694695226e-1
allele num: 101682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-28T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-28T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-28T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-28T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-28T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-28T>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 7.5e0
  variant carriers: 1556
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 1.75e1
  variant carriers: 7849
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.5e0
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 2.75e1
  variant carriers: 3806
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.25e1
  variant carriers: 901
genotype depth: GenotypeDepth
  all individuals: 10008
  bin: 1.25e1
  variant carriers: 5322
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 538
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 15070
  bin: 2.25e1
  variant carriers: 6697
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.75e1
  variant carriers: 1192
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 9.75e1
  variant carriers: 1476
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 3.25e1
  variant carriers: 2003
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 632
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 4.25e1
  variant carriers: 414
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 9.25e1
  variant carriers: 344
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.25e1
  variant carriers: 481
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 1.75e1
  variant carriers: 214
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 2.75e1
  variant carriers: 241
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 3.25e1
  variant carriers: 472
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 7.5e0
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 6591
  bin: 2.25e1
  variant carriers: 315
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 1.25e1
  variant carriers: 160
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 2.5e0
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 8.75e1
  variant carriers: 325
genotype quality: GenotypeQuality
  all individuals: 26512
  bin: 9.75e1
  variant carriers: 25215
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 5.75e1
  variant carriers: 458
num of homozygotes: 7425
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ

12-78542599-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542599
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542599
    reference: chr 12
allele count: 2
allele frequency: 2.402633286081545e-5
allele num: 83242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-23T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-23T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-23T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-23T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-23T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-23T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15345
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5033
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3288
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

12-78542602-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542602
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542603
    reference: chr 12
allele count: 39773
allele frequency: 3.769309501696393e-1
allele num: 105518
alternate allele: AT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-13dupT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-13dupT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-13dupT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-13dupT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-13dupT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-13dupT
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.5e0
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 2.75e1
  variant carriers: 4612
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 17444
  bin: 2.25e1
  variant carriers: 6939
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 1.75e1
  variant carriers: 7081
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 319
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.25e1
  variant carriers: 647
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 7.5e0
  variant carriers: 1132
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 1.25e1
  variant carriers: 4181
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 706
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.75e1
  variant carriers: 1462
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 9.75e1
  variant carriers: 1497
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 3.25e1
  variant carriers: 2544
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.25e1
  variant carriers: 960
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.75e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.5e0
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.25e1
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 6.75e1
  variant carriers: 836
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 8.75e1
  variant carriers: 570
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 8.25e1
  variant carriers: 637
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 4.75e1
  variant carriers: 654
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 4.25e1
  variant carriers: 495
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.5e0
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 7.25e1
  variant carriers: 668
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 9.25e1
  variant carriers: 487
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 5.75e1
  variant carriers: 679
genotype quality: GenotypeQuality
  all individuals: 12442
  bin: 6.25e1
  variant carriers: 699
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 2.75e1
  variant carriers: 247
num of homozygotes: 7627
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-78542602-A-ATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542602
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542604
    reference: chr 12
allele count: 2
allele frequency: 1.895411209461893e-5
allele num: 105518
alternate allele: ATT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-14_595-13dupTT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-14_4177-13dupTT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-14_1391-13dupTT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-14_4708-13dupTT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-14_4708-13dupTT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-14_4708-13dupTT
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17444
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25977
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

12-78542606-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542606
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542607
    reference: chr 12
allele count: 4
allele frequency: 3.676943724376299e-5
allele num: 108786
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-16_4708-15insG
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-16_4708-15insG
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-16_1391-15insG
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-16_4177-15insG
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-16_4708-15insG
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-16_595-15insG
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18710
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4401
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

12-78542609-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542609
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542609
    reference: chr 12
allele count: 7
allele frequency: 6.394212324387526e-5
allele num: 109474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-13T>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9131
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4445
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8632
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

12-78542609-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542609
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542610
    reference: chr 12
allele count: 4
allele frequency: 3.653835613935729e-5
allele num: 109474
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-11dupA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-11dupA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-11dupA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-11dupA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-11dupA
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-11dupA
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19984
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8632
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5558
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4445
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-78542614-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542614
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542614
    reference: chr 12
allele count: 1
allele frequency: 8.999280057595392e-6
allele num: 111120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-8G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-8G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-8G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-8G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-8G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-8G>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4620
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4802
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
hgvs: c.4708-8G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

12-78542619-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542619
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542619
    reference: chr 12
allele count: 1
allele frequency: 8.882256803808711e-6
allele num: 112584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4708-3C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4177-3C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1391-3C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4708-3C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4708-3C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.595-3C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27664
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
hgvs: c.4708-3C>T
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

12-78542625-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542625
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542625
    reference: chr 12
allele count: 1
allele frequency: 8.762398794293925e-6
allele num: 114124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1394A>T
  hgvsp: ENSP00000446644.1:p.Ile466Phe
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.598A>T
  hgvsp: ENSP00000448303.1:p.Ile200Phe
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4711A>T
  hgvsp: ENSP00000228327.6:p.Ile1571Phe
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4180A>T
  hgvsp: ENSP00000266692.7:p.Ile1394Phe
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4711A>T
  hgvsp: ENSP00000381007.2:p.Ile1571Phe
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4711A>T
  hgvsp: ENSP00000446132.2:p.Ile1571Phe
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10676
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5069
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile1571Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

12-78542637-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542637
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542637
    reference: chr 12
allele count: 4
allele frequency: 3.447681434235477e-5
allele num: 116020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4192C>T
  hgvsp: ENSP00000266692.7:p.Arg1398Trp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4723C>T
  hgvsp: ENSP00000228327.6:p.Arg1575Trp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1406C>T
  hgvsp: ENSP00000446644.1:p.Arg470Trp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4723C>T
  hgvsp: ENSP00000446132.2:p.Arg1575Trp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.610C>T
  hgvsp: ENSP00000448303.1:p.Arg204Trp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4723C>T
  hgvsp: ENSP00000381007.2:p.Arg1575Trp
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29147
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11458
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5237
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg1575Trp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

12-78542638-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542638
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542638
    reference: chr 12
allele count: 1
allele frequency: 8.606740799394086e-6
allele num: 116188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.611G>A
  hgvsp: ENSP00000448303.1:p.Arg204Gln
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1407G>A
  hgvsp: ENSP00000446644.1:p.Arg470Gln
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4724G>A
  hgvsp: ENSP00000381007.2:p.Arg1575Gln
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4193G>A
  hgvsp: ENSP00000266692.7:p.Arg1398Gln
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4724G>A
  hgvsp: ENSP00000446132.2:p.Arg1575Gln
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4724G>A
  hgvsp: ENSP00000228327.6:p.Arg1575Gln
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8657
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5300
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg1575Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

12-78542642-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542642
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542642
    reference: chr 12
allele count: 1
allele frequency: 8.558859275235797e-6
allele num: 116838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4197A>G
  hgvsp: ENST00000266692.7:c.4197A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4728A>G
  hgvsp: ENST00000228327.6:c.4728A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4728A>G
  hgvsp: ENST00000397909.2:c.4728A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.615A>G
  hgvsp: ENST00000550788.1:c.615A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4728A>G
  hgvsp: ENST00000536525.2:c.4728A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1411A>G
  hgvsp: ENST00000552895.1:c.1411A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg1576Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

12-78542645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542645
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542645
    reference: chr 12
allele count: 1
allele frequency: 8.543795495711015e-6
allele num: 117044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.618G>A
  hgvsp: ENST00000550788.1:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1414G>A
  hgvsp: ENST00000552895.1:c.1414G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4731G>A
  hgvsp: ENST00000536525.2:c.4731G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4731G>A
  hgvsp: ENST00000228327.6:c.4731G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4731G>A
  hgvsp: ENST00000397909.2:c.4731G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4200G>A
  hgvsp: ENST00000266692.7:c.4200G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29797
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu1577Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

12-78542646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542646
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542646
    reference: chr 12
allele count: 1
allele frequency: 8.540584859251161e-6
allele num: 117088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4732C>T
  hgvsp: ENST00000397909.2:c.4732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.619C>T
  hgvsp: ENST00000550788.1:c.619C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1415C>T
  hgvsp: ENST00000552895.1:c.1415C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4732C>T
  hgvsp: ENST00000228327.6:c.4732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4732C>T
  hgvsp: ENST00000536525.2:c.4732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4201C>T
  hgvsp: ENST00000266692.7:c.4201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu1578Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-78542674-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542674
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542674
    reference: chr 12
allele count: 2
allele frequency: 1.699986400108799e-5
allele num: 117648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.647C>A
  hgvsp: ENSP00000448303.1:p.Thr216Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4760C>A
  hgvsp: ENSP00000228327.6:p.Thr1587Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4760C>A
  hgvsp: ENSP00000381007.2:p.Thr1587Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4229C>A
  hgvsp: ENSP00000266692.7:p.Thr1410Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1443C>A
  hgvsp: ENSP00000446644.1:p.Thr482Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4760C>A
  hgvsp: ENSP00000446132.2:p.Thr1587Asn
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33960
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8669
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr1587Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

12-78542693-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542693
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542693
    reference: chr 12
allele count: 1
allele frequency: 8.634087376964255e-6
allele num: 115820
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4779A>G
  hgvsp: ENST00000536525.2:c.4779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4779A>G
  hgvsp: ENST00000397909.2:c.4779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4248A>G
  hgvsp: ENST00000266692.7:c.4248A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4779A>G
  hgvsp: ENST00000228327.6:c.4779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.666A>G
  hgvsp: ENST00000550788.1:c.666A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1462A>G
  hgvsp: ENST00000552895.1:c.1462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24182
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8674
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26498
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser1593Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-78542696-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542696
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542696
    reference: chr 12
allele count: 1
allele frequency: 8.64677907479464e-6
allele num: 115650
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.669A>C
  hgvsp: ENST00000550788.1:c.669A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4782A>C
  hgvsp: ENST00000397909.2:c.4782A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1465A>C
  hgvsp: ENST00000552895.1:c.1465A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4782A>C
  hgvsp: ENST00000228327.6:c.4782A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4251A>C
  hgvsp: ENST00000266692.7:c.4251A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4782A>C
  hgvsp: ENST00000536525.2:c.4782A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala1594Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

12-78542699-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542699
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542699
    reference: chr 12
allele count: 41470
allele frequency: 3.614888423988842e-1
allele num: 114720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4785T>C
  hgvsp: ENST00000397909.2:c.4785T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4785T>C
  hgvsp: ENST00000536525.2:c.4785T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4254T>C
  hgvsp: ENST00000266692.7:c.4254T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1468T>C
  hgvsp: ENST00000552895.1:c.1468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4785T>C
  hgvsp: ENST00000228327.6:c.4785T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.672T>C
  hgvsp: ENST00000550788.1:c.672T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 1.75e1
  variant carriers: 2487
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 4.75e1
  variant carriers: 1864
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 5.25e1
  variant carriers: 1203
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 716
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 1.25e1
  variant carriers: 1055
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.75e1
  variant carriers: 621
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 2.75e1
  variant carriers: 4961
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 4.25e1
  variant carriers: 2963
genotype depth: GenotypeDepth
  all individuals: 15893
  bin: 2.25e1
  variant carriers: 3955
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.25e1
  variant carriers: 430
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 7.5e0
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 3.25e1
  variant carriers: 4858
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.75e1
  variant carriers: 894
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.75e1
  variant carriers: 372
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 528
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 9.75e1
  variant carriers: 1940
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 3.75e1
  variant carriers: 3964
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.75e1
  variant carriers: 514
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.25e1
  variant carriers: 510
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.5e0
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 6.75e1
  variant carriers: 465
genotype quality: GenotypeQuality
  all individuals: 4782
  bin: 2.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 5.25e1
  variant carriers: 306
genotype quality: GenotypeQuality
  all individuals: 30535
  bin: 9.75e1
  variant carriers: 29236
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.75e1
  variant carriers: 181
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.25e1
  variant carriers: 294
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 64
hgvs: c.4785T>C
num of homozygotes: 8024
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD

12-78542721-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542721
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542721
    reference: chr 12
allele count: 8
allele frequency: 8.885532132305573e-5
allele num: 90034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4254+22A>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4785+22A>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4785+22A>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.672+22A>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4785+22A>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1468+22A>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21304
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7632
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3812
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24910
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

12-78542724-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542724
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542724
    reference: chr 12
allele count: 3
allele frequency: 3.40560790101033e-5
allele num: 88090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1468+25T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4785+25T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4785+25T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4785+25T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4254+25T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.672+25T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4060
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24795
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4885
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

12-78542732-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542732
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542732
    reference: chr 12
allele count: 107
allele frequency: 1.34449135504624e-3
allele num: 79584
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4785+33C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4785+33C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4785+33C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4254+33C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.672+33C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1468+33C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13159
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21225
  bin: 1.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 9.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 4328
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5395
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21917
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

12-78542738-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542738
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542738
    reference: chr 12
allele count: 469
allele frequency: 6.378348973208214e-3
allele num: 73530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4254+39T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4785+39T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4785+39T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1468+39T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.672+39T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4785+39T>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 2.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7267
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 18874
  bin: 1.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 15271
  bin: 7.5e0
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 2.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 1.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8223
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 9.75e1
  variant carriers: 427
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4330
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 5648
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4415
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 8.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 16
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

12-78542741-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542741
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542741
    reference: chr 12
allele count: 1
allele frequency: 1.457088736704065e-5
allele num: 68630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4785+42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4254+42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4785+42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1468+42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.672+42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4785+42A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4717
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15039
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3958
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5730
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-78542747-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78542747
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78542747
    reference: chr 12
allele count: 1
allele frequency: 1.518418415378542e-5
allele num: 65858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4254+48G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4785+48G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4785+48G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4785+48G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.672+48G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1468+48G>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4341
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5401
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

12-78552932-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78552932
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78552932
    reference: chr 12
allele count: 3
allele frequency: 2.551975228827112e-5
allele num: 117556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4786-51T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4786-51T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.673-51T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4255-51T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4786-51T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1469-51T>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6841
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4250
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4640
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6411
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

12-78552937-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78552937
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78552937
    reference: chr 12
allele count: 2
allele frequency: 1.700882758151481e-5
allele num: 117586
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.4786-46A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.4786-46A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446644
  ensembl transcript: ENST00000552895
  gene symbol: NAV3
  hgvsc: ENST00000552895.1:c.1469-46A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.4255-46A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448303
  ensembl transcript: ENST00000550788
  gene symbol: NAV3
  hgvsc: ENST00000550788.1:c.673-46A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.4786-46A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13567
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6250
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36246
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

DP
type: SiteQuality
SIO_000300: 3.229636e6

QD
type: SiteQuality
SIO_000300: 1.223e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.01e-1

GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36243
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.93e-1

DP
type: SiteQuality
SIO_000300: 3.226467e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.607e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.178e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

GenotypeQuality
all individuals: 201
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

DP
type: SiteQuality
SIO_000300: 3.219553e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.162e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

GenotypeQuality
all individuals: 3109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36229
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1874
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.048e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.087e0

QD
type: SiteQuality
SIO_000300: 1.18e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -1.009e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.218876e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 860
bin: 7.5e0
variant carriers: 50

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 31

GenotypeQuality
all individuals: 413
bin: 6.75e1
variant carriers: 42

GenotypeQuality
all individuals: 2016
bin: 6.25e1
variant carriers: 21

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 31

GenotypeQuality
all individuals: 1987
bin: 9.75e1
variant carriers: 1976

South Asian
type: Population
allele count: 1754
allele frequency: 2.424661321537185e-1
allele num: 7234
num of homozygotes: 238

Latino
type: Population
allele count: 25
allele frequency: 2.777777777777778e-1
allele num: 90
num of homozygotes: 3

African
type: Population
allele count: 69
allele frequency: 3.709677419354839e-1
allele num: 186
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 731
allele frequency: 2.85546875e-1
allele num: 2560
num of homozygotes: 123

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 67
allele frequency: 5.075757575757576e-1
allele num: 132
num of homozygotes: 17

Other
type: Population
allele count: 33
allele frequency: 2.796610169491525e-1
allele num: 118
num of homozygotes: 4

QD
type: SiteQuality
SIO_000300: 2.143e1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

DP
type: SiteQuality
SIO_000300: 1.43194e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.157e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.14e-1

MQ
type: SiteQuality
SIO_000300: 5.655e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

GenotypeQuality
all individuals: 99
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.941176470588235e-2
allele num: 34
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4184
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.93e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.94e-1

FS
type: SiteQuality
SIO_000300: 4.801e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e-1

MQ
type: SiteQuality
SIO_000300: 5.739e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

DP
type: SiteQuality
SIO_000300: 1.49419e5

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
all individuals: 111
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2593
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 66
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variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 8.25e1
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GenotypeQuality
all individuals: 824
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variant carriers: 3

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.777777777777778e-2
allele num: 72
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.325581395348837e-2
allele num: 86
num of homozygotes: 0

South Asian
type: Population
allele count: 145
allele frequency: 2.883850437549721e-2
allele num: 5028
num of homozygotes: 7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.415458937198068e-3
allele num: 1656
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 5.348e1

DP
type: SiteQuality
SIO_000300: 7.8839e4

VQSLOD
type: SiteQuality
SIO_000300: -1.459e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.367e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

GenotypeQuality
all individuals: 11
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 403
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.321112515802782e-4
allele num: 1582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.847e1

MQRankSum
type: SiteQuality
SIO_000300: -2.148e0

DP
type: SiteQuality
SIO_000300: 7.29e4

VQSLOD
type: SiteQuality
SIO_000300: -3.036e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.13e-2

QD
type: SiteQuality
SIO_000300: 7.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

GenotypeQuality
all individuals: 283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.481389578163772e-4
allele num: 4030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.401e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.73e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.379e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.449e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.0978e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 1705
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.43e0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.144e-1

FS
type: SiteQuality
SIO_000300: 3.522e0

DP
type: SiteQuality
SIO_000300: 4.1261e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.218e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.88e-2

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
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variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.666666666666667e-2
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 3.445305770887166e-3
allele num: 2322
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQ
type: SiteQuality
SIO_000300: 5.81e1

DP
type: SiteQuality
SIO_000300: 1.01181e5

VQSLOD
type: SiteQuality
SIO_000300: -5.02e-2

FS
type: SiteQuality
SIO_000300: 1.0099e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-2

QD
type: SiteQuality
SIO_000300: 1.367e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 39
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2
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variant carriers: 2

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.75e1
variant carriers: 219

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.785714285714286e-2
allele num: 112
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.434782608695652e-3
allele num: 184
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.260869565217391e-2
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 71
allele frequency: 2.990732940185341e-2
allele num: 2374
num of homozygotes: 3

South Asian
type: Population
allele count: 167
allele frequency: 2.460223924572776e-2
allele num: 6788
num of homozygotes: 2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

DP
type: SiteQuality
SIO_000300: 1.13494e5

FS
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 5.723e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.075e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.569858712715856e-4
allele num: 6370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.681818181818182e-3
allele num: 176
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.674e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: -9.397e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.71e0

FS
type: SiteQuality
SIO_000300: 1.2369e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.67e-2

DP
type: SiteQuality
SIO_000300: 1.0655e5

QD
type: SiteQuality
SIO_000300: 6.73e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.785714285714286e-2
allele num: 56
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1360
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 1.019887812340643e-3
allele num: 3922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.469e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 1.612e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 5.7981e4

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.71e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.434e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3453
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GenotypeQuality
all individuals: 367
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.718213058419244e-3
allele num: 1164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 5.734e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.21e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.0e0

QD
type: SiteQuality
SIO_000300: 1.284e1

FS
type: SiteQuality
SIO_000300: 6.131e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 5.2017e4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 8.51063829787234e-4
allele num: 2350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 4.4665e4

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.734e1

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

South Asian
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allele count: 2
allele frequency: 1.944390433599067e-4
allele num: 10286
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 43766
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.587301587301587e-3
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4592
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.037129226301597e-4
allele num: 9642
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.360000000000001e-1

BaseQRankSum
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FS
type: SiteQuality
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QD
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MQ
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SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.177999e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

South Asian
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allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44036
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.291e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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SIO_000300: -4.62e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -7.6e-3

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

QD
type: SiteQuality
SIO_000300: 1.142e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 1.559089491736826e-4
allele num: 6414
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44102
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.358e1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

VQSLOD
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SIO_000300: 4.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.194632e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44692
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.475080538184574e-5
allele num: 10554
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 6506
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.419e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 1.243207e6

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.241e1

QD
type: SiteQuality
SIO_000300: 5.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

FS
type: SiteQuality
SIO_000300: 2.452e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.570877869283336e-5
allele num: 45656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 4.425e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

MQ
type: SiteQuality
SIO_000300: 5.996e1

DP
type: SiteQuality
SIO_000300: 1.301864e6

QD
type: SiteQuality
SIO_000300: 1.392e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.501501501501501e-4
allele num: 6660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 10868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4788
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

MQ
type: SiteQuality
SIO_000300: 5.647e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.81e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6772
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 9990
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4890
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European (Non-Finnish)
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allele count: 2
allele frequency: 4.258399693395222e-5
allele num: 46966
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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QD
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ClippingRankSum
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MQRankSum
type: SiteQuality
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FS
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11162
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4890
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9990
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Other
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allele frequency: 0.0e0
allele num: 666
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European (Non-Finnish)
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allele frequency: 2.129199846697611e-5
allele num: 46966
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East Asian
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African
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allele num: 6772
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VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele num: 12286
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.977926342023023e-5
allele num: 50558
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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QD
type: SiteQuality
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MQRankSum
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FS
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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East Asian
type: Population
allele count: 0
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allele num: 6500
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Latino
type: Population
allele count: 1
allele frequency: 1.089087344805053e-4
allele num: 9182
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.307e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.891e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.232e0

DP
type: SiteQuality
SIO_000300: 1.705831e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

GenotypeQuality
all individuals: 1417
bin: 2.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1549
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2344
bin: 2.5e0
variant carriers: 10

GenotypeQuality
all individuals: 2091
bin: 3.25e1
variant carriers: 8

GenotypeQuality
all individuals: 25835
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1331
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1299
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1288
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.817430503380916e-4
allele num: 10648
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.302083333333333e-3
allele num: 768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.815703380588877e-4
allele num: 7336
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.73785198106155e-4
allele num: 8026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.62476439031463e-4
allele num: 55176
num of homozygotes: 0

South Asian
type: Population
allele count: 38
allele frequency: 3.001579778830964e-3
allele num: 12660
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

QD
type: SiteQuality
SIO_000300: 1.937e1

DP
type: SiteQuality
SIO_000300: 1.587798e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2164
bin: 4.75e1
variant carriers: 2035

GenotypeQuality
all individuals: 3259
bin: 6.25e1
variant carriers: 2016

GenotypeQuality
all individuals: 2091
bin: 3.25e1
variant carriers: 1824

GenotypeQuality
all individuals: 1292
bin: 7.25e1
variant carriers: 1254

GenotypeQuality
all individuals: 2208
bin: 5.25e1
variant carriers: 2111

GenotypeQuality
all individuals: 1250
bin: 9.25e1
variant carriers: 1230

GenotypeQuality
all individuals: 1620
bin: 7.75e1
variant carriers: 1571

GenotypeQuality
all individuals: 1914
bin: 6.75e1
variant carriers: 1752

African
type: Population
allele count: 6031
allele frequency: 7.51432843259407e-1
allele num: 8026
num of homozygotes: 2194

East Asian
type: Population
allele count: 4300
allele frequency: 5.861504907306434e-1
allele num: 7336
num of homozygotes: 1176

European (Finnish)
type: Population
allele count: 4202
allele frequency: 7.234848484848485e-1
allele num: 5808
num of homozygotes: 1464

Other
type: Population
allele count: 540
allele frequency: 7.03125e-1
allele num: 768
num of homozygotes: 181

Latino
type: Population
allele count: 8369
allele frequency: 7.859691960931631e-1
allele num: 10648
num of homozygotes: 3220

South Asian
type: Population
allele count: 7135
allele frequency: 5.635860979462876e-1
allele num: 12660
num of homozygotes: 1707

European (Non-Finnish)
type: Population
allele count: 39014
allele frequency: 7.070827896186748e-1
allele num: 55176
num of homozygotes: 13106

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.587798e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

QD
type: SiteQuality
SIO_000300: 1.937e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

GenotypeQuality
all individuals: 2208
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1292
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1549
bin: 4.25e1
variant carriers: 19

GenotypeQuality
all individuals: 1620
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1288
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3259
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1417
bin: 2.75e1
variant carriers: 21

GenotypeQuality
all individuals: 25835
bin: 9.75e1
variant carriers: 178

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.033057851239669e-3
allele num: 5808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 198
allele frequency: 3.588516746411483e-3
allele num: 55176
num of homozygotes: 2

African
type: Population
allele count: 71
allele frequency: 8.846249688512334e-3
allele num: 8026
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 6.510416666666667e-3
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 8.178844056706652e-4
allele num: 7336
num of homozygotes: 0

Latino
type: Population
allele count: 30
allele frequency: 2.817430503380916e-3
allele num: 10648
num of homozygotes: 0

South Asian
type: Population
allele count: 31
allele frequency: 2.448657187993681e-3
allele num: 12660
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.587798e6

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.937e1

GenotypeQuality
all individuals: 22409
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2121
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1069
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2899
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 452
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 678
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 184
allele frequency: 3.66067165366863e-3
allele num: 50264
num of homozygotes: 1

Other
type: Population
allele count: 3
allele frequency: 4.189944134078212e-3
allele num: 716
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 6.590871642774757e-4
allele num: 12138
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 11
allele frequency: 2.127659574468085e-3
allele num: 5170
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.845900368288428e-4
allele num: 10318
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.486968449931413e-4
allele num: 7290
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 1.214e0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.171614e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

QD
type: SiteQuality
SIO_000300: 1.087e1

GenotypeQuality
all individuals: 2862
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 678
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17084
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 1

Latino
type: Population
allele count: 6
allele frequency: 5.815080441946114e-4
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

African
type: Population
allele count: 83
allele frequency: 1.138545953360768e-2
allele num: 7290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.947477319751711e-5
allele num: 50264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12138
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

FS
type: SiteQuality
SIO_000300: 1.214e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.67e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

DP
type: SiteQuality
SIO_000300: 1.171614e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

QD
type: SiteQuality
SIO_000300: 1.087e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6786
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.238589553468446e-5
allele num: 12138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50264
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.171614e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 1.214e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.67e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

QD
type: SiteQuality
SIO_000300: 1.087e1

GenotypeQuality
all individuals: 1674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 337
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17649
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.002002002002002e-5
allele num: 49950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5156
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.231807704972011e-5
allele num: 12148
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.937e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.449e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

DP
type: SiteQuality
SIO_000300: 1.165284e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeQuality
all individuals: 1040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4354
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23106
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.420454545454545e-4
allele num: 7040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.362602441879912e-5
allele num: 11958
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.07e-1

FS
type: SiteQuality
SIO_000300: 1.298e0

QD
type: SiteQuality
SIO_000300: 6.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.152e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.150971e6

GenotypeQuality
all individuals: 24304
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5034
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.041733022989914e-5
allele num: 48978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.11717e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

QD
type: SiteQuality
SIO_000300: 6.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

FS
type: SiteQuality
SIO_000300: 1.0436e1

MQ
type: SiteQuality
SIO_000300: 6.09e1

VQSLOD
type: SiteQuality
SIO_000300: -1.603e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
all individuals: 25239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 420
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.200704225352113e-5
allele num: 45440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.90249e5

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

FS
type: SiteQuality
SIO_000300: 2.382e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

QD
type: SiteQuality
SIO_000300: 1.002e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 3822
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.304056568663938e-5
allele num: 10748
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.239e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

FS
type: SiteQuality
SIO_000300: 1.851e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

QD
type: SiteQuality
SIO_000300: 8.74e0

DP
type: SiteQuality
SIO_000300: 9.86988e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

GenotypeQuality
all individuals: 2933
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.726519337016575e-4
allele num: 5792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40008
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.78e-1

QD
type: SiteQuality
SIO_000300: 3.17e0

DP
type: SiteQuality
SIO_000300: 8.42945e5

GenotypeQuality
all individuals: 3777
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.030632809351068e-4
allele num: 4962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

FS
type: SiteQuality
SIO_000300: 2.0679e1

QD
type: SiteQuality
SIO_000300: 9.73e0

DP
type: SiteQuality
SIO_000300: 7.56229e5

VQSLOD
type: SiteQuality
SIO_000300: -2.925e0

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.507e0

GenotypeQuality
all individuals: 4150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1811
bin: 4.75e1
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GenotypeQuality
all individuals: 550
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3732
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.166561114629512e-4
allele num: 6316
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.48867e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.059e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.78e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 487
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variant carriers: 0

GenotypeQuality
all individuals: 6343
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.275727094806791e-5
allele num: 43942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4750
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 1.085e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

DP
type: SiteQuality
SIO_000300: 1.073811e6

GenotypeQuality
all individuals: 312
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3245
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.272933903082098e-5
allele num: 43996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.94325689856199e-4
allele num: 5146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.509e0

VQSLOD
type: SiteQuality
SIO_000300: -7.333e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: -1.039e0

QD
type: SiteQuality
SIO_000300: 1.491e1

DP
type: SiteQuality
SIO_000300: 1.143086e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.736e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

GenotypeQuality
all individuals: 498
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
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GenotypeQuality
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GenotypeQuality
all individuals: 1681
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 312
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GenotypeQuality
all individuals: 9078
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43712
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5076
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 1.153705e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.648e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

GenotypeQuality
all individuals: 502
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 252
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GenotypeQuality
all individuals: 518
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.295157218269452e-5
allele num: 43570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.99e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.662e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

DP
type: SiteQuality
SIO_000300: 1.16318e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

GenotypeQuality
all individuals: 502
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
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GenotypeQuality
all individuals: 1565
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GenotypeQuality
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GenotypeQuality
all individuals: 1097
bin: 4.25e1
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GenotypeQuality
all individuals: 1095
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GenotypeQuality
all individuals: 532
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.576659038901602e-5
allele num: 43700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

DP
type: SiteQuality
SIO_000300: 1.170537e6

MQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

FS
type: SiteQuality
SIO_000300: 6.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.651e-1

QD
type: SiteQuality
SIO_000300: 1.379e1

MQ
type: SiteQuality
SIO_000300: 5.873e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

GenotypeQuality
all individuals: 973
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
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GenotypeQuality
all individuals: 3093
bin: 1.75e1
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GenotypeQuality
all individuals: 3204
bin: 3.75e1
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GenotypeQuality
all individuals: 873
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variant carriers: 0

GenotypeQuality
all individuals: 5302
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.11595429538722e-4
allele num: 4726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7104
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.169e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.58e0

VQSLOD
type: SiteQuality
SIO_000300: -2.229e-1

QD
type: SiteQuality
SIO_000300: 1.718e1

MQRankSum
type: SiteQuality
SIO_000300: 8.38e-1

DP
type: SiteQuality
SIO_000300: 1.236165e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

GenotypeQuality
all individuals: 1166
bin: 5.25e1
variant carriers: 868

GenotypeQuality
all individuals: 1767
bin: 6.75e1
variant carriers: 671

GenotypeQuality
all individuals: 894
bin: 7.75e1
variant carriers: 516

GenotypeQuality
all individuals: 609
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variant carriers: 318

GenotypeQuality
all individuals: 1777
bin: 3.75e1
variant carriers: 663

GenotypeQuality
all individuals: 1134
bin: 4.75e1
variant carriers: 842

GenotypeQuality
all individuals: 10252
bin: 6.25e1
variant carriers: 809

Other
type: Population
allele count: 279
allele frequency: 3.478802992518703e-1
allele num: 802
num of homozygotes: 45

European (Non-Finnish)
type: Population
allele count: 19103
allele frequency: 3.4849314068885e-1
allele num: 54816
num of homozygotes: 2939

East Asian
type: Population
allele count: 3756
allele frequency: 5.278246205733558e-1
allele num: 7116
num of homozygotes: 908

African
type: Population
allele count: 2843
allele frequency: 3.353385232366124e-1
allele num: 8478
num of homozygotes: 423

Latino
type: Population
allele count: 6632
allele frequency: 6.395371263259402e-1
allele num: 10370
num of homozygotes: 2086

South Asian
type: Population
allele count: 3775
allele frequency: 2.678444728253158e-1
allele num: 14094
num of homozygotes: 510

European (Finnish)
type: Population
allele count: 2579
allele frequency: 4.294039294039294e-1
allele num: 6006
num of homozygotes: 514

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.98e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 7.82e-1

DP
type: SiteQuality
SIO_000300: 1.502803e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

QD
type: SiteQuality
SIO_000300: 2.061e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1616
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10369
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3297
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4942
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.35464643727987e-4
allele num: 7382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12552
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.723543605653223e-4
allele num: 5802
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.821e1

DP
type: SiteQuality
SIO_000300: 1.549774e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

VQSLOD
type: SiteQuality
SIO_000300: -7.008e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 372
bin: 1.75e1
variant carriers: 165

GenotypeQuality
all individuals: 1330
bin: 3.75e1
variant carriers: 561

GenotypeQuality
all individuals: 869
bin: 7.75e1
variant carriers: 498

GenotypeQuality
all individuals: 5448
bin: 2.25e1
variant carriers: 216

GenotypeQuality
all individuals: 25977
bin: 9.75e1
variant carriers: 24677

GenotypeQuality
all individuals: 1225
bin: 5.25e1
variant carriers: 826

GenotypeQuality
all individuals: 1763
bin: 3.25e1
variant carriers: 392

East Asian
type: Population
allele count: 3897
allele frequency: 5.172551101672418e-1
allele num: 7534
num of homozygotes: 948

African
type: Population
allele count: 2891
allele frequency: 3.304755372656607e-1
allele num: 8748
num of homozygotes: 433

European (Non-Finnish)
type: Population
allele count: 19506
allele frequency: 3.411929333566556e-1
allele num: 57170
num of homozygotes: 3022

Other
type: Population
allele count: 283
allele frequency: 3.417874396135266e-1
allele num: 828
num of homozygotes: 46

South Asian
type: Population
allele count: 3828
allele frequency: 2.647302904564315e-1
allele num: 14460
num of homozygotes: 514

Latino
type: Population
allele count: 6759
allele frequency: 6.339335959482274e-1
allele num: 10662
num of homozygotes: 2135

European (Finnish)
type: Population
allele count: 2609
allele frequency: 4.265860039241334e-1
allele num: 6116
num of homozygotes: 529

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 6.919999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.598e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

DP
type: SiteQuality
SIO_000300: 1.607504e6

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.58e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

GenotypeQuality
all individuals: 1104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.915629322268326e-5
allele num: 14460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.749169144656288e-5
allele num: 57170
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.58e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 1.607504e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 6.919999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

QD
type: SiteQuality
SIO_000300: 1.598e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

GenotypeQuality
all individuals: 2216
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2387
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8625
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59238
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.665689149560117e-4
allele num: 10912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 2.541e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

DP
type: SiteQuality
SIO_000300: 1.689456e6

GenotypeQuality
all individuals: 2310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5558
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.737636437137851e-5
allele num: 14842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.028326237806309e-5
allele num: 59662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.798429982273994e-4
allele num: 7898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.702897e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 4.917e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

QD
type: SiteQuality
SIO_000300: 1.259e1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.66e-1

GenotypeQuality
all individuals: 1531
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.028326237806309e-5
allele num: 59662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.134088417975886e-5
allele num: 10948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 4.917e0

DP
type: SiteQuality
SIO_000300: 1.702897e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.259e1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

GenotypeQuality
all individuals: 780
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8632
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1688
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.646903820816864e-5
allele num: 60720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e0

FS
type: SiteQuality
SIO_000300: 2.054e0

VQSLOD
type: SiteQuality
SIO_000300: -3.485e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

DP
type: SiteQuality
SIO_000300: 1.735754e6

QD
type: SiteQuality
SIO_000300: 8.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.754e1

GenotypeQuality
all individuals: 1566
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8640
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1051
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4055
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11066
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.084363478638039e-4
allele num: 9222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.764975e6

VQSLOD
type: SiteQuality
SIO_000300: -6.771e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.11e-1

FS
type: SiteQuality
SIO_000300: 1.414e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.2e-2

QD
type: SiteQuality
SIO_000300: 1.79e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 819
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8645
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 328
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.596576939042693e-5
allele num: 62634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.775e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.69e-1

FS
type: SiteQuality
SIO_000300: 8.159000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.794317e6

VQSLOD
type: SiteQuality
SIO_000300: -7.565e-1

QD
type: SiteQuality
SIO_000300: 7.73e0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1853
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1933
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8654
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 33046
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 2.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.703963873557451e-5
allele num: 63776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.547029702970297e-4
allele num: 6464
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.267e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.296e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.43e-1

QD
type: SiteQuality
SIO_000300: 7.39e0

DP
type: SiteQuality
SIO_000300: 1.83357e6

GenotypeQuality
all individuals: 662
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33028
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565141175734051e-5
allele num: 63892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.837054e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.057e0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

FS
type: SiteQuality
SIO_000300: 3.861e0

QD
type: SiteQuality
SIO_000300: 9.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
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variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55458135124211e-5
allele num: 64326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.308e0

DP
type: SiteQuality
SIO_000300: 1.845181e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

FS
type: SiteQuality
SIO_000300: 3.696e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 5.18e0

GenotypeQuality
all individuals: 331
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
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variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.227425582264292e-5
allele num: 16058
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.958e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.227e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

DP
type: SiteQuality
SIO_000300: 1.849464e6

MQ
type: SiteQuality
SIO_000300: 6.047e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

GenotypeQuality
all individuals: 248
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8664
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variant carriers: 1

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041449697979588e-4
allele num: 9602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16058
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.475e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.665e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

DP
type: SiteQuality
SIO_000300: 1.850821e6

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 2.755e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
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variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64824
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.238543472875898e-4
allele num: 16148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.12e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

QD
type: SiteQuality
SIO_000300: 9.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.38e-1

FS
type: SiteQuality
SIO_000300: 1.726e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.575e0

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

DP
type: SiteQuality
SIO_000300: 1.85611e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 1130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
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GenotypeQuality
all individuals: 1158
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variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4333
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5101
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variant carriers: 0

GenotypeQuality
all individuals: 1850
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variant carriers: 0

GenotypeQuality
all individuals: 1925
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GenotypeQuality
all individuals: 763
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.314725940894166e-5
allele num: 15836
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

DP
type: SiteQuality
SIO_000300: 1.81854e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

FS
type: SiteQuality
SIO_000300: 6.214e0

QD
type: SiteQuality
SIO_000300: 1.29e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.703e0

GenotypeQuality
all individuals: 4562
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2440
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variant carriers: 0

GenotypeQuality
all individuals: 8675
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25996
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GenotypeQuality
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GenotypeQuality
all individuals: 1131
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variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57267322995628e-5
allele num: 63586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15808
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.157e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e0

DP
type: SiteQuality
SIO_000300: 1.81707e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.289e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.348e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 9.488e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

GenotypeQuality
all individuals: 917
bin: 7.75e1
variant carriers: 537

GenotypeQuality
all individuals: 451
bin: 5.75e1
variant carriers: 225

GenotypeQuality
all individuals: 187
bin: 2.5e0
variant carriers: 26

GenotypeQuality
all individuals: 520
bin: 2.75e1
variant carriers: 75

GenotypeQuality
all individuals: 16063
bin: 6.25e1
variant carriers: 379

GenotypeQuality
all individuals: 378
bin: 4.75e1
variant carriers: 271

GenotypeQuality
all individuals: 442
bin: 3.25e1
variant carriers: 129

GenotypeQuality
all individuals: 240
bin: 4.25e1
variant carriers: 145

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 303

GenotypeQuality
all individuals: 788
bin: 8.25e1
variant carriers: 557

European (Non-Finnish)
type: Population
allele count: 20524
allele frequency: 3.257053988002666e-1
allele num: 63014
num of homozygotes: 3235

European (Finnish)
type: Population
allele count: 2668
allele frequency: 4.177889132477294e-1
allele num: 6386
num of homozygotes: 545

South Asian
type: Population
allele count: 3979
allele frequency: 2.529239766081872e-1
allele num: 15732
num of homozygotes: 536

Other
type: Population
allele count: 291
allele frequency: 3.415492957746479e-1
allele num: 852
num of homozygotes: 48

East Asian
type: Population
allele count: 4056
allele frequency: 4.958435207823961e-1
allele num: 8180
num of homozygotes: 991

African
type: Population
allele count: 2987
allele frequency: 3.168894546997666e-1
allele num: 9426
num of homozygotes: 454

Latino
type: Population
allele count: 6965
allele frequency: 6.257861635220126e-1
allele num: 11130
num of homozygotes: 2215

BaseQRankSum
type: SiteQuality
SIO_000300: -1.895e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.067489e6

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 6.63e-1

QD
type: SiteQuality
SIO_000300: 1.716e1

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.25e1
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 12540
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GenotypeQuality
all individuals: 3793
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GenotypeQuality
all individuals: 227
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.630722817889029e-4
allele num: 49058
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.087e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

FS
type: SiteQuality
SIO_000300: 2.552e0

DP
type: SiteQuality
SIO_000300: 1.067563e6

GenotypeQuality
all individuals: 310
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
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variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 328
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GenotypeQuality
all individuals: 512
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GenotypeQuality
all individuals: 586
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13104
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.076086956521739e-4
allele num: 7360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.878e1

DP
type: SiteQuality
SIO_000300: 1.034845e6

VQSLOD
type: SiteQuality
SIO_000300: -2.092e0

FS
type: SiteQuality
SIO_000300: 5.431e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

QD
type: SiteQuality
SIO_000300: 1.72e1

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

GenotypeQuality
all individuals: 1826
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6600
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GenotypeQuality
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GenotypeQuality
all individuals: 1430
bin: 6.75e1
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GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
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variant carriers: 2

GenotypeQuality
all individuals: 698
bin: 4.25e1
variant carriers: 2

Latino
type: Population
allele count: 5
allele frequency: 6.245316012990258e-4
allele num: 8006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 92
allele frequency: 2.13605758068261e-3
allele num: 43070
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.481481481481481e-4
allele num: 6750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.905972045743329e-3
allele num: 4722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4072
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.36776e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

QD
type: SiteQuality
SIO_000300: 1.046e1

GenotypeQuality
all individuals: 2647
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 331
bin: 9.25e1
variant carriers: 12

GenotypeQuality
all individuals: 18360
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1236
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1071
bin: 4.75e1
variant carriers: 2

African
type: Population
allele count: 438
allele frequency: 6.865203761755485e-2
allele num: 6380
num of homozygotes: 16

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3430
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 3.523035230352304e-3
allele num: 7380
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.567398119122257e-3
allele num: 638
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.70852554245686e-4
allele num: 11706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.050249987374375e-5
allele num: 39602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4394
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.794e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

DP
type: SiteQuality
SIO_000300: 8.90559e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
all individuals: 4253
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1235
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.717834429526553e-5
allele num: 36794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

QD
type: SiteQuality
SIO_000300: 1.73e1

MQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.459e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.88e-1

DP
type: SiteQuality
SIO_000300: 8.66597e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

GenotypeQuality
all individuals: 664
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5667
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 502
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3916
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.069472156720479e-5
allele num: 11026
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.56806e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

QD
type: SiteQuality
SIO_000300: 1.686e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.284e0

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2314
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16023
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.662406815761449e-4
allele num: 11268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65054
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.808e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

DP
type: SiteQuality
SIO_000300: 1.677746e6