11-116968973-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116968973
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116968973
    reference: chr 11
allele count: 1
allele frequency: 2.184932704072714e-5
allele num: 45768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.15G>C
  hgvsp: ENST00000415541.1:c.15G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.159G>C
  hgvsp: ENST00000446921.2:c.159G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.-16G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.159G>C
  hgvsp: ENST00000375300.1:c.159G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000485363
  gene symbol: SIK3
  hgvsc: ENST00000485363.1:n.49G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.-1721G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.139G>C
  hgvsp: ENST00000445177.1:c.139G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.-443G>C
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32086
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro47Pro
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

11-116968981-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116968981
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116968981
    reference: chr 11
allele count: 1
allele frequency: 2.718868950516585e-5
allele num: 36780
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.-24C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.131C>A
  hgvsp: ENSP00000391295.1:p.Pro45Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.7C>A
  hgvsp: ENSP00000392761.1:p.Pro3Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.-451C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.151C>A
  hgvsp: ENSP00000390442.2:p.Pro51Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.-1729C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.151C>A
  hgvsp: ENSP00000364449.1:p.Pro51Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.-24C>A
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000485363
  gene symbol: SIK3
  hgvsc: ENST00000485363.1:n.41C>A
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19059
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21203
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27815
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro45Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

11-116968984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116968984
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116968984
    reference: chr 11
allele count: 1
allele frequency: 3.157562361856647e-5
allele num: 31670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.148C>T
  hgvsp: ENSP00000364449.1:p.Pro50Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.128C>T
  hgvsp: ENSP00000391295.1:p.Pro44Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000485363
  gene symbol: SIK3
  hgvsc: ENST00000485363.1:n.38C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.-1732C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000392761
  ensembl transcript: ENST00000415541
  gene symbol: SIK3
  hgvsc: ENST00000415541.1:c.4C>T
  hgvsp: ENSP00000392761.1:p.Pro2Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000415873
  ensembl transcript: ENST00000434315
  gene symbol: SIK3
  hgvsc: ENST00000434315.2:c.-454C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.148C>T
  hgvsp: ENSP00000390442.2:p.Pro50Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.-27C>T
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro44Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

11-116968988-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116968988
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116968988
    reference: chr 11
allele count: 1
allele frequency: 4.001920922042581e-5
allele num: 24988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.144G>C
  hgvsp: ENST00000446921.2:c.144G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000292055
  ensembl transcript: ENST00000292055
  gene symbol: SIK3
  hgvsc: ENST00000292055.4:c.-31G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.144G>C
  hgvsp: ENST00000375300.1:c.144G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000438108
  ensembl transcript: ENST00000542607
  gene symbol: SIK3
  hgvsc: ENST00000542607.1:c.-31G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.124G>C
  hgvsp: ENST00000445177.1:c.124G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364437
  ensembl transcript: ENST00000375288
  gene symbol: SIK3
  hgvsc: ENST00000375288.1:c.-1736G>C
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000485363
  gene symbol: SIK3
  hgvsc: ENST00000485363.1:n.34G>C
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10478
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28192
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro48Pro
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

11-116969002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969002
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969002
    reference: chr 11
allele count: 1
allele frequency: 7.658140603461479e-5
allele num: 13058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.130G>A
  hgvsp: ENSP00000390442.2:p.Ala44Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.110G>A
  hgvsp: ENSP00000391295.1:p.Ala38Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.130G>A
  hgvsp: ENSP00000364449.1:p.Ala44Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000485363
  gene symbol: SIK3
  hgvsc: ENST00000485363.1:n.20G>A
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35005
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala38Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

11-116969005-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969005
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969005
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 10800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.127C>G
  hgvsp: ENSP00000390442.2:p.Pro43Ala
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.107C>G
  hgvsp: ENSP00000391295.1:p.Pro37Ala
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000485363
  gene symbol: SIK3
  hgvsc: ENST00000485363.1:n.17C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.127C>G
  hgvsp: ENSP00000364449.1:p.Pro43Ala
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12553
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34941
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro37Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD

11-116969006-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969006
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969006
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 8870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000485363
  gene symbol: SIK3
  hgvsc: ENST00000485363.1:n.16C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.106C>T
  hgvsp: ENST00000445177.1:c.106C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.126C>T
  hgvsp: ENST00000446921.2:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.126C>T
  hgvsp: ENST00000375300.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11849
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33737
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser36Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

11-116969007-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969007
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969007
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 8862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.125C>G
  hgvsp: ENSP00000390442.2:p.Ser42Cys
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000485363
  gene symbol: SIK3
  hgvsc: ENST00000485363.1:n.15C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.125C>G
  hgvsp: ENSP00000364449.1:p.Ser42Cys
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.105C>G
  hgvsp: ENSP00000391295.1:p.Ser36Cys
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11776
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33822
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6388
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser36Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

11-116969012-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969012
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969012
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 3712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.120C>T
  hgvsp: ENST00000375300.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.100C>T
  hgvsp: ENST00000445177.1:c.100C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000485363
  gene symbol: SIK3
  hgvsc: ENST00000485363.1:n.10C>T
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.120C>T
  hgvsp: ENST00000446921.2:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8317
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19457
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25506
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala34Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-116969012-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969012
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969012
    reference: chr 11
allele count: 2
allele frequency: 5.387931034482759e-4
allele num: 3712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160584
  ensembl transcript: ENST00000485363
  gene symbol: SIK3
  hgvsc: ENST00000485363.1:n.10C>G
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.120C>G
  hgvsp: ENST00000446921.2:c.120C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.100C>G
  hgvsp: ENST00000445177.1:c.100C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.120C>G
  hgvsp: ENST00000375300.1:c.120C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala34Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-116969023-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969023
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969023
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.109G>T
  hgvsp: ENSP00000390442.2:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.89G>T
  hgvsp: ENSP00000391295.1:p.Ala31Ser
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.109G>T
  hgvsp: ENSP00000364449.1:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10452
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12984
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala31Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

11-116969040-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969040
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969040
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 64
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.72C>T
  hgvsp: ENSP00000391295.1:p.Ala25Val
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.92C>T
  hgvsp: ENSP00000364449.1:p.Ala31Val
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.92C>T
  hgvsp: ENSP00000390442.2:p.Ala31Val
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala25Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff

11-116969041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969041
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969041
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 60
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.91G>A
  hgvsp: ENSP00000364449.1:p.Ala31Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.91G>A
  hgvsp: ENSP00000390442.2:p.Ala31Thr
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.71G>A
  hgvsp: ENSP00000391295.1:p.Ala25Thr
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala25Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

11-116969076-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969076
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969076
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 2
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.56G>A
  hgvsp: ENSP00000364449.1:p.Gly19Glu
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.36G>A
  hgvsp: ENSP00000391295.1:p.Gly13Glu
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.56G>A
  hgvsp: ENSP00000390442.2:p.Gly19Glu
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 7.5e0
  variant carriers: 3
hgvs: p.Gly13Glu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

11-116969093-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969093
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969093
    reference: chr 11
allele count: 1
allele frequency: 1.666666666666667e-1
allele num: 6
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.39C>T
  hgvsp: ENST00000375300.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000391295
  ensembl transcript: ENST00000445177
  gene symbol: SIK3
  hgvsc: ENST00000445177.1:c.19C>T
  hgvsp: ENST00000445177.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.39C>T
  hgvsp: ENST00000446921.2:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala7Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-116969113-T-TCGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969113
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969116
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 12
alternate allele: TCGC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000390442
  ensembl transcript: ENST00000446921
  gene symbol: SIK3
  hgvsc: ENST00000446921.2:c.16_18dupGCG
  hgvsp: ENSP00000390442.2:p.Ala6dup
  variant of: http://identifiers.org/hgnc/29165
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000160584
  ensembl protein: ENSP00000364449
  ensembl transcript: ENST00000375300
  gene symbol: SIK3
  hgvsc: ENST00000375300.1:c.16_18dupGCG
  hgvsp: ENSP00000364449.1:p.Ala6dup
  variant of: http://identifiers.org/hgnc/29165
canonical: false
consequence: inframe insertion
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3777
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala6dup
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

11-116969157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 116969157
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 116969157
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 2
alternate allele: A
canonical: true
consequence: upstream gene
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 1791
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 619
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genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

11-117015010-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015010
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015010
    reference: chr 11
allele count: 1
allele frequency: 2.963841138114997e-4
allele num: 3374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-132C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-132C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.2C>T
  hgvsp: ENSP00000304006.6:p.Ala1?
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2882
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 43
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genotype quality: GenotypeQuality
  all individuals: 400
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 732
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genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala1?
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-117015013-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015013
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015013
    reference: chr 11
allele count: 2
allele frequency: 5.393743257820927e-4
allele num: 3708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.5C>A
  hgvsp: ENSP00000304006.6:p.Ala2Asp
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-129C>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-129C>A
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala2Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-117015026-GGCCGGAGGAGGGACGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015026
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015010
    reference: chr 11
allele count: 8
allele frequency: 1.539053482108503e-3
allele num: 5198
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsp: ENSP00000304006.6:p.Gly9AlafsTer35
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 12
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  variant carriers: 0
hgvs: p.Gly9AlafsTer35
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: GGCCGGAGGAGGGACGC
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/11-117015029-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015029
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015029
    reference: chr 11
allele count: 6
allele frequency: 1.100917431192661e-3
allele num: 5450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.21C>A
  hgvsp: ENST00000304808.6:c.21C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-113C>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-113C>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-113C>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.5C>A
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala7Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

11-117015030-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015030
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015030
    reference: chr 11
allele count: 1
allele frequency: 1.745200698080279e-4
allele num: 5730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.6G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.22G>C
  hgvsp: ENSP00000304006.6:p.Gly8Arg
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-112G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-112G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-112G>C
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly8Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

11-117015042-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015042
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015042
    reference: chr 11
allele count: 5
allele frequency: 7.814942169427947e-4
allele num: 6398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.18C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-100C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.34C>G
  hgvsp: ENSP00000304006.6:p.Arg12Gly
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-100C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-100C>G
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg12Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

11-117015045-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015045
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015045
    reference: chr 11
allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.21C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-97C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-97C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-97C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.37C>T
  hgvsp: ENSP00000304006.6:p.Arg13Trp
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2467
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg13Trp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

11-117015065-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015065
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015065
    reference: chr 11
allele count: 7
allele frequency: 9.906594961788847e-4
allele num: 7066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-77C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.57C>G
  hgvsp: ENST00000304808.6:c.57C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.41C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-77C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-77C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-77C>G
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr19Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

11-117015069-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015069
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015069
    reference: chr 11
allele count: 1
allele frequency: 1.415227851684121e-4
allele num: 7066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-73C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-73C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.61C>T
  hgvsp: ENSP00000304006.6:p.Arg21Ter
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-73C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-73C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.45C>T
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg21Ter
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

11-117015165-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015165
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015165
    reference: chr 11
allele count: 1
allele frequency: 4.29553264604811e-4
allele num: 2328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-8+31T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-8+31T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+31T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.37+31T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+31T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-8+31T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-8+31T>C
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-117015166-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015166
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015166
    reference: chr 11
allele count: 1
allele frequency: 4.5004500450045e-4
allele num: 2222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+32G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-8+32G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-8+32G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+32G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-8+32G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-8+32G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.37+32G>C
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3459
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

11-117015170-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117015170
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117015170
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 2076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+36T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-8+36T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.37+36T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-8+36T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-8+36T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+36T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-8+36T>C
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

11-117023117-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023117
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023117
    reference: chr 11
allele count: 1
allele frequency: 8.333750020834376e-6
allele num: 119994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+7983C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-7-40C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-7-40C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-7-40C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+7983C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-7-40C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.38-40C>T
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

11-117023129-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023129
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023129
    reference: chr 11
allele count: 2
allele frequency: 1.663672056964131e-5
allele num: 120216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-7-28G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-7-28G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+7995G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-7-28G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.38-28G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-7-28G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+7995G>A
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10633
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3759
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

11-117023131-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023131
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023131
    reference: chr 11
allele count: 158
allele frequency: 1.313055763317543e-3
allele num: 120330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-7-26A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-7-26A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-7-26A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-7-26A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.38-26A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+7997A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+7997A>G
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 16615
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10629
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 17341
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29860
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum

11-117023142-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023142
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023142
    reference: chr 11
allele count: 1
allele frequency: 8.276638360563474e-6
allele num: 120822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-7-15G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8008G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-7-15G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-7-15G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.38-15G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-7-15G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8008G>C
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-117023144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023144
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023144
    reference: chr 11
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8010C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8010C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-7-13C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-7-13C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-7-13C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.38-13C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-7-13C>T
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3777
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

11-117023145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023145
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023145
    reference: chr 11
allele count: 2
allele frequency: 1.653767281868095e-5
allele num: 120936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8011G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8011G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-7-12G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-7-12G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-7-12G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.38-12G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-7-12G>A
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31852
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-117023145-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023145
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023145
    reference: chr 11
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.38-12G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-7-12G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-7-12G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-7-12G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-7-12G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8011G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8011G>T
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8423
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7238
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

11-117023162-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023162
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023162
    reference: chr 11
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.-2G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8028G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8028G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.-2G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.-2G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.-2G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.43G>C
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18570
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7234
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

11-117023191-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023191
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023191
    reference: chr 11
allele count: 2
allele frequency: 1.648451280022419e-5
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8057G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.28G>A
  hgvsp: ENSP00000435289.1:p.Ala10Thr
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.28G>A
  hgvsp: ENSP00000434951.2:p.Ala10Thr
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8057G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.28G>A
  hgvsp: ENSP00000388742.2:p.Ala10Thr
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.72G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.28G>A
  hgvsp: ENSP00000431365.1:p.Ala10Thr
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7237
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3777
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala10Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

11-117023191-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023191
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023191
    reference: chr 11
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.28G>T
  hgvsp: ENSP00000435289.1:p.Ala10Ser
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.28G>T
  hgvsp: ENSP00000434951.2:p.Ala10Ser
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8057G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8057G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.28G>T
  hgvsp: ENSP00000388742.2:p.Ala10Ser
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.72G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.28G>T
  hgvsp: ENSP00000431365.1:p.Ala10Ser
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3777
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala10Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

11-117023197-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023197
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023197
    reference: chr 11
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8063C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.34C>T
  hgvsp: ENSP00000434951.2:p.Pro12Ser
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.34C>T
  hgvsp: ENSP00000388742.2:p.Pro12Ser
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.34C>T
  hgvsp: ENSP00000431365.1:p.Pro12Ser
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.78C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8063C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.34C>T
  hgvsp: ENSP00000435289.1:p.Pro12Ser
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro12Ser
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

11-117023198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023198
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023198
    reference: chr 11
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.35C>T
  hgvsp: ENSP00000434951.2:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8064C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.79C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8064C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.35C>T
  hgvsp: ENSP00000431365.1:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.35C>T
  hgvsp: ENSP00000435289.1:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.35C>T
  hgvsp: ENSP00000388742.2:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro12Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

11-117023199-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023199
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023199
    reference: chr 11
allele count: 248
allele frequency: 2.044045892127126e-3
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.80G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.36G>T
  hgvsp: ENST00000529887.2:c.36G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.36G>T
  hgvsp: ENST00000527958.1:c.36G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.36G>T
  hgvsp: ENST00000530272.1:c.36G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.36G>T
  hgvsp: ENST00000419197.2:c.36G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8065G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8065G>T
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 18439
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10778
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 17744
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32636
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro12Pro
num of homozygotes: 2
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

11-117023201-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023201
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023201
    reference: chr 11
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.38A>G
  hgvsp: ENSP00000431365.1:p.His13Arg
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8067A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8067A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.38A>G
  hgvsp: ENSP00000435289.1:p.His13Arg
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.82A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.38A>G
  hgvsp: ENSP00000434951.2:p.His13Arg
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.38A>G
  hgvsp: ENSP00000388742.2:p.His13Arg
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7182
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2651
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His13Arg
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-117023216-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023216
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023216
    reference: chr 11
allele count: 14
allele frequency: 1.154106144790859e-4
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.53T>C
  hgvsp: ENSP00000431365.1:p.Ile18Thr
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.53T>C
  hgvsp: ENSP00000388742.2:p.Ile18Thr
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8082T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8082T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.53T>C
  hgvsp: ENSP00000435289.1:p.Ile18Thr
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.53T>C
  hgvsp: ENSP00000434951.2:p.Ile18Thr
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.97T>C
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8507
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile18Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

11-117023247-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023247
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023247
    reference: chr 11
allele count: 1
allele frequency: 8.25559316436886e-6
allele num: 121130
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+3A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+3A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8113A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+3A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+3A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+3A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8113A>G
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7179
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8459
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3754
  bin: 7.75e1
  variant carriers: 0
hgvs: c.81+3A>G
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

11-117023254-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023254
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023254
    reference: chr 11
allele count: 2
allele frequency: 1.65196418541646e-5
allele num: 121068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+10A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+10A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+10A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8120A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+10A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+10A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8120A>G
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31931
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7180
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

11-117023257-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023257
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023257
    reference: chr 11
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+13G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8123G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+13G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+13G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+13G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8123G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+13G>A
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

11-117023257-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023257
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023257
    reference: chr 11
allele count: 5
allele frequency: 4.132299707433181e-5
allele num: 120998
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8123G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+13G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+13G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+13G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8123G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+13G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+13G>C
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7183
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 8422
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

11-117023261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023261
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023261
    reference: chr 11
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+17G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+17G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+17G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8127G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+17G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8127G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+17G>A
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31307
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

11-117023263-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023263
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023263
    reference: chr 11
allele count: 1
allele frequency: 8.271709100534353e-6
allele num: 120894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+19G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+19G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8129G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8129G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+19G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+19G>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+19G>T
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7179
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31027
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

11-117023265-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023265
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023265
    reference: chr 11
allele count: 2
allele frequency: 1.654725067430047e-5
allele num: 120866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+21A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8131A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+21A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+21A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+21A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8131A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+21A>G
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8316
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30359
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3724
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-117023273-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023273
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023271
    reference: chr 11
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8140_110+8141delAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+30_81+31delAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+30_125+31delAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+30_81+31delAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+30_81+31delAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8140_126+8141delAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+30_81+31delAT
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7174
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28092
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: CAT
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

11-117023274-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023274
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023274
    reference: chr 11
allele count: 1
allele frequency: 8.285965232089886e-6
allele num: 120686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+30A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+30A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8140A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+30A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+30A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8140A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+30A>T
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13991
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2624
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-117023278-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023278
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023278
    reference: chr 11
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+34G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+34G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+34G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+34G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8144G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8144G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+34G>A
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16433
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7882
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

11-117023288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023288
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023288
    reference: chr 11
allele count: 4
allele frequency: 3.334111292634948e-5
allele num: 119972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8154C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+44C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+44C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8154C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+44C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+44C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+44C>T
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13063
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3613
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

11-117023292-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117023292
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117023292
    reference: chr 11
allele count: 1
allele frequency: 8.408307407718826e-6
allele num: 118930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.81+48T>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.81+48T>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+8158T>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.126+8158T>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.81+48T>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.81+48T>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.125+48T>G
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5649
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7166
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

11-117030601-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030601
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030601
    reference: chr 11
allele count: 1
allele frequency: 8.440813019110001e-6
allele num: 118472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3885C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.82-49C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.499C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.82-49C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.126-49C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.82-49C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.82-49C>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15467C>G
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8231
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8045
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-117030614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030614
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030614
    reference: chr 11
allele count: 4
allele frequency: 3.514197357323587e-5
allele num: 113824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.82-36C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3872C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.82-36C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.512C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.126-36C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.82-36C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15480C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.82-36C>T
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-117030618-TTAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030618
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030615
    reference: chr 11
allele count: 2
allele frequency: 2.072581815167154e-5
allele num: 96498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.521_523delAAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.126-27_126-25delAAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.82-27_82-25delAAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.82-27_82-25delAAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.82-27_82-25delAAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3863_127-3861delAAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15489_110+15491delAAT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.82-27_82-25delAAT
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13097
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: TTAA
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-117030621-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030621
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030621
    reference: chr 11
allele count: 1
allele frequency: 1.107591431672685e-5
allele num: 90286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.82-29A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.82-29A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.82-29A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.519A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15487A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3865A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.82-29A>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.126-29A>T
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10377
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

11-117030622-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030622
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030621
    reference: chr 11
allele count: 13
allele frequency: 1.683501683501684e-4
allele num: 77220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.82-26delA
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.522delA
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.126-26delA
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3862delA
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15490delA
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.82-26delA
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.82-26delA
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.82-26delA
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4214
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10977
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: TA
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

11-117030624-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030624
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030625
    reference: chr 11
allele count: 56
allele frequency: 4.83408722074514e-4
allele num: 115844
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.82-15dupT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.126-15dupT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15501dupT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3851dupT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.82-15dupT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.82-15dupT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.533dupT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.82-15dupT
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9079
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 6.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-117030624-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030624
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030623
    reference: chr 11
allele count: 79910
allele frequency: 6.898069818031145e-1
allele num: 115844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15501delT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.533delT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.82-15delT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.126-15delT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3851delT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.82-15delT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.82-15delT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.82-15delT
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 5.25e1
  variant carriers: 3694
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 4.25e1
  variant carriers: 2636
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 8.25e1
  variant carriers: 3315
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 9.25e1
  variant carriers: 2287
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 6.75e1
  variant carriers: 4429
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 8.75e1
  variant carriers: 2878
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.25e1
  variant carriers: 1580
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.75e1
  variant carriers: 4326
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 2030
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 2.25e1
  variant carriers: 646
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 7.75e1
  variant carriers: 3796
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 4300
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 377
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 6.25e1
  variant carriers: 4542
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 168
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.75e1
  variant carriers: 1063
genotype depth: GenotypeDepth
  all individuals: 9079
  bin: 9.75e1
  variant carriers: 8530
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 4.75e1
  variant carriers: 3169
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.5e0
  variant carriers: 190
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.25e1
  variant carriers: 344
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.75e1
  variant carriers: 243
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 6.25e1
  variant carriers: 411
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.25e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 7.75e1
  variant carriers: 492
genotype quality: GenotypeQuality
  all individuals: 48387
  bin: 9.75e1
  variant carriers: 47158
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.75e1
  variant carriers: 309
num of homozygotes: 27025
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: AT
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-117030624-ATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030624
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030622
    reference: chr 11
allele count: 179
allele frequency: 1.54518145091675e-3
allele num: 115844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.82-16_82-15delTT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.126-16_126-15delTT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.82-16_82-15delTT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3852_127-3851delTT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.82-16_82-15delTT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15500_110+15501delTT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.82-16_82-15delTT
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.532_533delTT
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9079
  bin: 9.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 4.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 1.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.5e0
  variant carriers: 26
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: ATT
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

11-117030624-ATTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030624
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030621
    reference: chr 11
allele count: 3
allele frequency: 2.589689582542039e-5
allele num: 115844
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48387
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11154
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 1.360914534567229e-4
  allele num: 14696
  num of homozygotes: 1
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9878
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6508
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: ATTT
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

11-117030633-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030633
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030633
    reference: chr 11
allele count: 8100
allele frequency: 6.678649758414275e-2
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15499T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.82-17T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.82-17T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.126-17T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3853T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.531T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.82-17T>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.82-17T>C
  variant of: http://identifiers.org/hgnc/8575
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 4.75e1
  variant carriers: 421
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 3.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 8.75e1
  variant carriers: 460
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 6.25e1
  variant carriers: 624
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 7.75e1
  variant carriers: 563
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 9.25e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 2.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 6.75e1
  variant carriers: 599
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 4.25e1
  variant carriers: 388
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.75e1
  variant carriers: 564
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 7.25e1
  variant carriers: 634
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 8.25e1
  variant carriers: 470
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 5.25e1
  variant carriers: 489
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 13597
  bin: 9.75e1
  variant carriers: 1408
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 2.25e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 327
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum

11-117030646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030646
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030646
    reference: chr 11
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.126-4C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15512C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.82-4C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3840C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.82-4C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.544C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.82-4C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.82-4C>T
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15212
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3089
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50075
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 7.75e1
  variant carriers: 0
hgvs: c.82-4C>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

11-117030647-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030647
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030647
    reference: chr 11
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.545C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.82-3C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15513C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.82-3C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.126-3C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.82-3C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.82-3C>T
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3839C>T
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: c.82-3C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-117030658-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030658
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030658
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.90A>G
  hgvsp: ENST00000527958.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.90A>G
  hgvsp: ENST00000529887.2:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.90A>G
  hgvsp: ENST00000530272.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15524A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3828A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.556A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.90A>G
  hgvsp: ENST00000419197.2:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.134A>G
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15213
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3089
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50076
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg30Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

11-117030661-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030661
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030661
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.93T>G
  hgvsp: ENSP00000388742.2:p.Phe31Leu
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.93T>G
  hgvsp: ENSP00000434951.2:p.Phe31Leu
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3825T>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.93T>G
  hgvsp: ENSP00000435289.1:p.Phe31Leu
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.137T>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15527T>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.559T>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.93T>G
  hgvsp: ENSP00000431365.1:p.Phe31Leu
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50076
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe31Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

11-117030662-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030662
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030662
    reference: chr 11
allele count: 10
allele frequency: 8.236825198095645e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.94G>C
  hgvsp: ENSP00000431365.1:p.Val32Leu
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.560G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.94G>C
  hgvsp: ENSP00000435289.1:p.Val32Leu
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.138G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.94G>C
  hgvsp: ENSP00000388742.2:p.Val32Leu
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15528G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3824G>C
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.94G>C
  hgvsp: ENSP00000434951.2:p.Val32Leu
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15217
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3084
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val32Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

11-117030692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030692
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030692
    reference: chr 11
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.590G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.124G>A
  hgvsp: ENSP00000431365.1:p.Val42Ile
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.124G>A
  hgvsp: ENSP00000435289.1:p.Val42Ile
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.124G>A
  hgvsp: ENSP00000434951.2:p.Val42Ile
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3794G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.124G>A
  hgvsp: ENSP00000388742.2:p.Val42Ile
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.168G>A
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15558G>A
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50079
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val42Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

11-117030694-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117030694
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 117030694
    reference: chr 11
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533677
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533677.1:n.592A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000435289
  ensembl transcript: ENST00000527958
  gene symbol: PAFAH1B2
  hgvsc: ENST00000527958.1:c.126A>G
  hgvsp: ENST00000527958.1:c.126A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000526888
  gene symbol: PAFAH1B2
  hgvsc: ENST00000526888.1:n.110+15560A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000304006
  ensembl transcript: ENST00000304808
  gene symbol: PAFAH1B2
  hgvsc: ENST00000304808.6:c.127-3792A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168092
  ensembl transcript: ENST00000533206
  gene symbol: PAFAH1B2
  hgvsc: ENST00000533206.1:n.170A>G
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000431365
  ensembl transcript: ENST00000530272
  gene symbol: PAFAH1B2
  hgvsc: ENST00000530272.1:c.126A>G
  hgvsp: ENST00000530272.1:c.126A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000434951
  ensembl transcript: ENST00000529887
  gene symbol: PAFAH1B2
  hgvsc: ENST00000529887.2:c.126A>G
  hgvsp: ENST00000529887.2:c.126A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168092
  ensembl protein: ENSP00000388742
  ensembl transcript: ENST00000419197
  gene symbol: PAFAH1B2
  hgvsc: ENST00000419197.2:c.126A>G
  hgvsp: ENST00000419197.2:c.126A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8575
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15217
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val42Val
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 606
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14787
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.028359651949726e-5
allele num: 24824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1146
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: -1.772e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.554e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 2.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.11e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

DP
type: SiteQuality
SIO_000300: 5.57408e5

GenotypeQuality
all individuals: 380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 366
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2674
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.076657528683115e-5
allele num: 19698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2808
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.69062e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.25e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.039e1

FS
type: SiteQuality
SIO_000300: 3.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.431e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

GenotypeQuality
all individuals: 24661
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24342
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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East Asian
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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MQ
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ReadPosRankSum
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FS
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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DP
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BaseQRankSum
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FS
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Latino
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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FS
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Other
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South Asian
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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FS
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MQ
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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Other
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Latino
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East Asian
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European (Finnish)
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Other
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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African
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South Asian
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European (Finnish)
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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QD
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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GenotypeQuality
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Latino
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European (Non-Finnish)
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African
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East Asian
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South Asian
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European (Finnish)
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VQSLOD
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DP
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MQ
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QD
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FS
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InbreedingCoeff
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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South Asian
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East Asian
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Other
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DP
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VQSLOD
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QD
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MQ
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FS
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InbreedingCoeff
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GenotypeQuality
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East Asian
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Other
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Latino
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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QD
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DP
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Other
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Latino
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East Asian
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African
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South Asian
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FS
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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QD
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East Asian
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South Asian
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Latino
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African
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European (Non-Finnish)
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Other
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MQ
type: SiteQuality
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InbreedingCoeff
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QD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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FS
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VQSLOD
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ReadPosRankSum
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South Asian
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European (Non-Finnish)
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East Asian
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MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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Latino
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African
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 1.470588235294118e-3
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European (Finnish)
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DP
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MQ
type: SiteQuality
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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South Asian
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East Asian
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BaseQRankSum
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DP
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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Other
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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African
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South Asian
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European (Non-Finnish)
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Other
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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South Asian
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African
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Latino
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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QD
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MQ
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DP
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Other
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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African
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Other
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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East Asian
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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BaseQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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Latino
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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FS
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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allele frequency: 2.415458937198068e-3
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European (Finnish)
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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African
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European (Non-Finnish)
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South Asian
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Other
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DP
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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Latino
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South Asian
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Other
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DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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MQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Other
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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QD
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 4.370629370629371e-4
allele num: 11440
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South Asian
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European (Finnish)
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Other
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African
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East Asian
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European (Non-Finnish)
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allele count: 152
allele frequency: 2.29337034913546e-3
allele num: 66278
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InbreedingCoeff
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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QD
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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Latino
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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VQSLOD
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BaseQRankSum
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FS
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MQ
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QD
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ReadPosRankSum
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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African
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South Asian
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Other
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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DP
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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South Asian
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African
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FS
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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African
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Latino
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South Asian
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European (Non-Finnish)
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MQ
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InbreedingCoeff
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DP
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QD
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ClippingRankSum
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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SIO_000300: -2.386e0

FS
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DP
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QD
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16498
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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InbreedingCoeff
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66692
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
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SIO_000300: 2.41e0

ClippingRankSum
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SIO_000300: -1.388e0

FS
type: SiteQuality
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QD
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BaseQRankSum
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SIO_000300: -2.443e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.927895e6

VQSLOD
type: SiteQuality
SIO_000300: -7.134e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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QD
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VQSLOD
type: SiteQuality
SIO_000300: -1.164e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.004e0

DP
type: SiteQuality
SIO_000300: 1.927955e6

MQ
type: SiteQuality
SIO_000300: 5.905e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 246

Other
type: Population
allele count: 4
allele frequency: 4.415011037527594e-3
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 82
allele frequency: 1.239794375566979e-2
allele num: 6614
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 162
allele frequency: 2.429076950758712e-3
allele num: 66692
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.308e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.25e-2

FS
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

DP
type: SiteQuality
SIO_000300: 1.941073e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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FS
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DP
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

Latino
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allele count: 5
allele frequency: 4.327505625757314e-4
allele num: 11554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 9
allele frequency: 1.349811026456296e-4
allele num: 66676
num of homozygotes: 0

East Asian
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African
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Other
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MQ
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MQRankSum
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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Latino
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Other
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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MQ
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QD
type: SiteQuality
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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European (Non-Finnish)
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allele count: 2
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Other
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Latino
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InbreedingCoeff
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MQ
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QD
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
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num of homozygotes: 0

Latino
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allele count: 0
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African
type: Population
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South Asian
type: Population
allele count: 1
allele frequency: 6.083465141744738e-5
allele num: 16438
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e-1

DP
type: SiteQuality
SIO_000300: 1.917445e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 6.564e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e-1

QD
type: SiteQuality
SIO_000300: 1.52e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.513148009015778e-5
allele num: 66550
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.52e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e-1

FS
type: SiteQuality
SIO_000300: 6.564e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

DP
type: SiteQuality
SIO_000300: 1.917445e6

VQSLOD
type: SiteQuality
SIO_000300: 3.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.141e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.552e0

VQSLOD
type: SiteQuality
SIO_000300: -1.541e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQRankSum
type: SiteQuality
SIO_000300: -2.076e0

FS
type: SiteQuality
SIO_000300: 5.401e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

DP
type: SiteQuality
SIO_000300: 1.913966e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.120000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.188e0

DP
type: SiteQuality
SIO_000300: 1.911348e6

QD
type: SiteQuality
SIO_000300: 1.092e1

MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.088650754992694e-5
allele num: 16424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.905075e6

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.517e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.96e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 9.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.100536847242558e-5
allele num: 16392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.607e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.956e0

DP
type: SiteQuality
SIO_000300: 1.883851e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.09979260705136e-5
allele num: 16394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.645e1

DP
type: SiteQuality
SIO_000300: 1.879319e6

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 2.831e0

QD
type: SiteQuality
SIO_000300: 6.12e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.107243190423842e-5
allele num: 16374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.275e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 3.234e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.308e0

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.710623422023694e-5
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66042
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
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allele frequency: 2.637130801687763e-4
allele num: 11376
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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type: Population
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
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European (Finnish)
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South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.52587890625e-5
allele num: 65536
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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QD
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5880
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65130
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.015640869388584e-4
allele num: 9846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.077e1

DP
type: SiteQuality
SIO_000300: 2.225684e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.003e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.714e0

GenotypeQuality
all individuals: 3002
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8061
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16928
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2879
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15840
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.189359028068705e-4
allele num: 9548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61734
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.87e-1

DP
type: SiteQuality
SIO_000300: 2.447152e6

QD
type: SiteQuality
SIO_000300: 1.146e1

MQ
type: SiteQuality
SIO_000300: 5.997e1

FS
type: SiteQuality
SIO_000300: 7.518e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.566e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
all individuals: 2034
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8710
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8061
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.50689395838556e-4
allele num: 7978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.421e0

MQ
type: SiteQuality
SIO_000300: 5.504e1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

QD
type: SiteQuality
SIO_000300: 1.015e1

DP
type: SiteQuality
SIO_000300: 2.772153e6

GenotypeQuality
all individuals: 2514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8061
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 1
allele frequency: 1.461988304093567e-3
allele num: 684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14058
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

DP
type: SiteQuality
SIO_000300: 2.891771e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.64e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.485e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
all individuals: 1655
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8072
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1797
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3667
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3236
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.150844970928653e-5
allele num: 36806
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 6.720430107526882e-4
allele num: 13392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7316
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.31891321551042e-4
allele num: 7582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.753e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

QD
type: SiteQuality
SIO_000300: 8.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.53e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.055e1

DP
type: SiteQuality
SIO_000300: 3.079118e6

GenotypeQuality
all individuals: 557
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 509
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 773
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 3.25e1
variant carriers: 8

GenotypeQuality
all individuals: 548
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 483
bin: 1.25e1
variant carriers: 16

GenotypeQuality
all individuals: 1291
bin: 2.5e0
variant carriers: 22

GenotypeQuality
all individuals: 722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 584
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48387
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 755
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.690178104524901e-5
allele num: 65018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.77000777000777e-4
allele num: 7722
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.061753391374772e-4
allele num: 9878
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.586157432311279e-4
allele num: 11154
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 2.449646162221012e-3
allele num: 14696
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.889e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.173895e6

MQ
type: SiteQuality
SIO_000300: 6.05e1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 459
bin: 1.75e1
variant carriers: 222

GenotypeQuality
all individuals: 483
bin: 1.25e1
variant carriers: 223

GenotypeQuality
all individuals: 584
bin: 5.75e1
variant carriers: 395

GenotypeQuality
all individuals: 509
bin: 2.25e1
variant carriers: 236

GenotypeQuality
all individuals: 493
bin: 7.5e0
variant carriers: 253

GenotypeQuality
all individuals: 755
bin: 8.25e1
variant carriers: 513

GenotypeQuality
all individuals: 531
bin: 4.75e1
variant carriers: 319

GenotypeQuality
all individuals: 728
bin: 7.25e1
variant carriers: 474

GenotypeQuality
all individuals: 723
bin: 8.75e1
variant carriers: 514

GenotypeQuality
all individuals: 739
bin: 6.75e1
variant carriers: 401

GenotypeQuality
all individuals: 548
bin: 4.25e1
variant carriers: 306

GenotypeQuality
all individuals: 773
bin: 9.25e1
variant carriers: 543

Other
type: Population
allele count: 587
allele frequency: 6.762672811059908e-1
allele num: 868
num of homozygotes: 185

African
type: Population
allele count: 6272
allele frequency: 6.349463454140515e-1
allele num: 9878
num of homozygotes: 1831

European (Non-Finnish)
type: Population
allele count: 49886
allele frequency: 7.672644498446584e-1
allele num: 65018
num of homozygotes: 18730

Latino
type: Population
allele count: 7618
allele frequency: 6.829836829836829e-1
allele num: 11154
num of homozygotes: 2456

South Asian
type: Population
allele count: 7595
allele frequency: 5.168072945019053e-1
allele num: 14696
num of homozygotes: 1627

European (Finnish)
type: Population
allele count: 4672
allele frequency: 7.178856791641057e-1
allele num: 6508
num of homozygotes: 1636

East Asian
type: Population
allele count: 3280
allele frequency: 4.247604247604247e-1
allele num: 7722
num of homozygotes: 560

MQ
type: SiteQuality
SIO_000300: 6.05e1

VQSLOD
type: SiteQuality
SIO_000300: 5.41e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 4.173895e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.889e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

GenotypeQuality
all individuals: 480
bin: 3.25e1
variant carriers: 10

GenotypeQuality
all individuals: 459
bin: 1.75e1
variant carriers: 21

GenotypeQuality
all individuals: 493
bin: 2.75e1
variant carriers: 16

GenotypeQuality
all individuals: 856
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 531
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 722
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 48387
bin: 9.75e1
variant carriers: 53

GenotypeQuality
all individuals: 723
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 755
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 584
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 739
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 773
bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.536570374923171e-4
allele num: 6508
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.793078716155639e-4
allele num: 11154
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.11358574610245e-3
allele num: 9878
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.804572672836146e-4
allele num: 14696
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.304147465437788e-3
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.18000518000518e-4
allele num: 7722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 149
allele frequency: 2.291673075148421e-3
allele num: 65018
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

QD
type: SiteQuality
SIO_000300: 1.889e1

VQSLOD
type: SiteQuality
SIO_000300: 5.41e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.05e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 4.173895e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65018
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.295001295001295e-4
allele num: 7722
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.41e0

DP
type: SiteQuality
SIO_000300: 4.173895e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.889e1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.05e1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1069
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1038
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 50992
bin: 9.75e1
variant carriers: 7756

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1086
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2464
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 820
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1215
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 415
allele frequency: 4.001156961048978e-2
allele num: 10372
num of homozygotes: 11

South Asian
type: Population
allele count: 1678
allele frequency: 1.016969696969697e-1
allele num: 16500
num of homozygotes: 109

European (Non-Finnish)
type: Population
allele count: 4049
allele frequency: 6.070100743583593e-2
allele num: 66704
num of homozygotes: 118

European (Finnish)
type: Population
allele count: 513
allele frequency: 7.758620689655173e-2
allele num: 6612
num of homozygotes: 29

Latino
type: Population
allele count: 487
allele frequency: 4.210617326647069e-2
allele num: 11566
num of homozygotes: 10

East Asian
type: Population
allele count: 903
allele frequency: 1.047563805104408e-1
allele num: 8620
num of homozygotes: 47

Other
type: Population
allele count: 55
allele frequency: 6.05726872246696e-2
allele num: 908
num of homozygotes: 3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

MQ
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DP
type: SiteQuality
SIO_000300: 4.551011e6

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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African
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South Asian
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FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66734
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East Asian
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Other
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MQ
type: SiteQuality
SIO_000300: 6.035e1

MQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

ClippingRankSum
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SIO_000300: -5.78e-1

VQSLOD
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QD
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DP
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66734
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African
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allele frequency: 0.0e0
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Latino
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FS
type: SiteQuality
SIO_000300: 4.175e0

ClippingRankSum
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SIO_000300: 2.23e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -7.07e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.476e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.05e0

VQSLOD
type: SiteQuality
SIO_000300: 3.76e-1

DP
type: SiteQuality
SIO_000300: 4.668191e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16512
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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Other
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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QD
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DP
type: SiteQuality
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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East Asian
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Other
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South Asian
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European (Finnish)
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BaseQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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FS
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele num: 6614
num of homozygotes: 0

African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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East Asian
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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