11-6629357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629357
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629357
    reference: chr 11
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.147G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.171G>A
  hgvsp: ENST00000527394.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3562C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*151G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.171G>A
  hgvsp: ENST00000299421.4:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.171G>A
  hgvsp: ENST00000527327.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.171G>A
  hgvsp: ENST00000528995.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.171G>A
  hgvsp: ENST00000396751.2:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-267G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*151G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-267G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.171G>A
  hgvsp: ENST00000420936.2:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.457G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15727
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly57Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-6629359-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629359
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629359
    reference: chr 11
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.173C>T
  hgvsp: ENSP00000299421.3:p.Ala58Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.173C>T
  hgvsp: ENSP00000403487.2:p.Ala58Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-265C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*153C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.459C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.173C>T
  hgvsp: ENSP00000435323.1:p.Ala58Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.173C>T
  hgvsp: ENSP00000433129.1:p.Ala58Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.173C>T
  hgvsp: ENSP00000379975.2:p.Ala58Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-265C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.149C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.173C>T
  hgvsp: ENSP00000432796.1:p.Ala58Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3560G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*153C>T
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15738
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala58Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

11-6629361-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629361
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629361
    reference: chr 11
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.461C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*155C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3558G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*155C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.175C>T
  hgvsp: ENSP00000299421.3:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.175C>T
  hgvsp: ENSP00000432796.1:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.175C>T
  hgvsp: ENSP00000435323.1:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.175C>T
  hgvsp: ENSP00000379975.2:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.175C>T
  hgvsp: ENSP00000403487.2:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-263C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.175C>T
  hgvsp: ENSP00000433129.1:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-263C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.151C>T
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16995
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg59Trp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

11-6629366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629366
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629366
    reference: chr 11
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-258C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.180C>T
  hgvsp: ENST00000528995.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.156C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3553G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*160C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.180C>T
  hgvsp: ENST00000527327.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.466C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.180C>T
  hgvsp: ENST00000299421.4:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.180C>T
  hgvsp: ENST00000396751.2:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.180C>T
  hgvsp: ENST00000527394.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.180C>T
  hgvsp: ENST00000420936.2:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*160C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-258C>T
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile60Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

11-6629370-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629370
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629370
    reference: chr 11
allele count: 3
allele frequency: 2.471495419495156e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.184G>A
  hgvsp: ENSP00000433129.1:p.Val62Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.184G>A
  hgvsp: ENSP00000435323.1:p.Val62Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.470G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.184G>A
  hgvsp: ENSP00000403487.2:p.Val62Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*164G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.184G>A
  hgvsp: ENSP00000379975.2:p.Val62Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.184G>A
  hgvsp: ENSP00000432796.1:p.Val62Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.184G>A
  hgvsp: ENSP00000299421.3:p.Val62Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3549C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-254G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*164G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.160G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-254G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val62Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-6629379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629379
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629379
    reference: chr 11
allele count: 4
allele frequency: 3.295110056675893e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.193C>T
  hgvsp: ENSP00000299421.3:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3540G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.193C>T
  hgvsp: ENSP00000435323.1:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.193C>T
  hgvsp: ENSP00000379975.2:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.169C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-245C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.479C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-245C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*173C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*173C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.193C>T
  hgvsp: ENSP00000403487.2:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.193C>T
  hgvsp: ENSP00000432796.1:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.193C>T
  hgvsp: ENSP00000433129.1:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg65Cys
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-6629380-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629380
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629380
    reference: chr 11
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.480G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.194G>T
  hgvsp: ENSP00000299421.3:p.Arg65Leu
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*174G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.194G>T
  hgvsp: ENSP00000435323.1:p.Arg65Leu
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.194G>T
  hgvsp: ENSP00000433129.1:p.Arg65Leu
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.170G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.194G>T
  hgvsp: ENSP00000403487.2:p.Arg65Leu
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-244G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.194G>T
  hgvsp: ENSP00000379975.2:p.Arg65Leu
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.194G>T
  hgvsp: ENSP00000432796.1:p.Arg65Leu
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*174G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3539C>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-244G>T
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg65Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

11-6629382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629382
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629382
    reference: chr 11
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.196G>A
  hgvsp: ENSP00000403487.2:p.Gly66Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*176G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.196G>A
  hgvsp: ENSP00000299421.3:p.Gly66Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.196G>A
  hgvsp: ENSP00000432796.1:p.Gly66Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*176G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3537C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-242G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.172G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.196G>A
  hgvsp: ENSP00000379975.2:p.Gly66Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.196G>A
  hgvsp: ENSP00000435323.1:p.Gly66Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.196G>A
  hgvsp: ENSP00000433129.1:p.Gly66Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-242G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.482G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly66Arg
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/11-6629391-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629391
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629392
    reference: chr 11
allele count: 3
allele frequency: 2.471943441934048e-5
allele num: 121362
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.187dupC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.211dupC
  hgvsp: ENSP00000403487.2:p.Leu71ProfsTer11
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*191dupC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.211dupC
  hgvsp: ENSP00000435323.1:p.Leu71ProfsTer11
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*191dupC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-227dupC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.211dupC
  hgvsp: ENSP00000433129.1:p.Leu71ProfsTer11
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3527dupG
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.211dupC
  hgvsp: ENSP00000379975.2:p.Leu71ProfsTer11
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.211dupC
  hgvsp: ENSP00000432796.1:p.Leu71ProfsTer11
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-227dupC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.497dupC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.211dupC
  hgvsp: ENSP00000299421.3:p.Leu71ProfsTer11
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 15779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu71ProfsTer11
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

11-6629391-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629391
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629391
    reference: chr 11
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.205A>T
  hgvsp: ENSP00000433129.1:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.491A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-233A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.205A>T
  hgvsp: ENSP00000379975.2:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*185A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.181A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.205A>T
  hgvsp: ENSP00000432796.1:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3528T>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.205A>T
  hgvsp: ENSP00000435323.1:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*185A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-233A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.205A>T
  hgvsp: ENSP00000403487.2:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.205A>T
  hgvsp: ENSP00000299421.3:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr69Ser
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

11-6629392-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629392
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629392
    reference: chr 11
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3527G>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-232C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.206C>G
  hgvsp: ENSP00000379975.2:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.206C>G
  hgvsp: ENSP00000403487.2:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.182C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.492C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.206C>G
  hgvsp: ENSP00000432796.1:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.206C>G
  hgvsp: ENSP00000433129.1:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*186C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*186C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.206C>G
  hgvsp: ENSP00000435323.1:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-232C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.206C>G
  hgvsp: ENSP00000299421.3:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr69Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

11-6629392-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629392
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629392
    reference: chr 11
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.206C>T
  hgvsp: ENSP00000403487.2:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.206C>T
  hgvsp: ENSP00000432796.1:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-232C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-232C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*186C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*186C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.206C>T
  hgvsp: ENSP00000299421.3:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.206C>T
  hgvsp: ENSP00000435323.1:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.206C>T
  hgvsp: ENSP00000433129.1:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.206C>T
  hgvsp: ENSP00000379975.2:p.Thr69Ile
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3527G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.182C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.492C>T
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr69Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

11-6629393-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629393
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629393
    reference: chr 11
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.207C>G
  hgvsp: ENST00000420936.2:c.207C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.207C>G
  hgvsp: ENST00000528995.1:c.207C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.207C>G
  hgvsp: ENST00000527394.1:c.207C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.207C>G
  hgvsp: ENST00000527327.1:c.207C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3526G>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.493C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-231C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.207C>G
  hgvsp: ENST00000299421.4:c.207C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.207C>G
  hgvsp: ENST00000396751.2:c.207C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*187C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-231C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*187C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.183C>G
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr69Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

11-6629414-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629414
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629414
    reference: chr 11
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.228T>G
  hgvsp: ENSP00000435323.1:p.Ser76Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.204T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.228T>G
  hgvsp: ENSP00000379975.2:p.Ser76Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.228T>G
  hgvsp: ENSP00000433129.1:p.Ser76Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.228T>G
  hgvsp: ENSP00000403487.2:p.Ser76Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.228T>G
  hgvsp: ENSP00000299421.3:p.Ser76Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*208T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.228T>G
  hgvsp: ENSP00000432796.1:p.Ser76Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-210T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*208T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.514T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3505A>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-210T>G
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16883
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser76Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

11-6629420-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629420
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629420
    reference: chr 11
allele count: 3
allele frequency: 2.47137325974133e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-204A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3499T>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.210A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.234A>G
  hgvsp: ENST00000528995.1:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*214A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*214A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.234A>G
  hgvsp: ENST00000396751.2:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.234A>G
  hgvsp: ENST00000420936.2:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.234A>G
  hgvsp: ENST00000299421.4:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-204A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.520A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.234A>G
  hgvsp: ENST00000527394.1:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.234A>G
  hgvsp: ENST00000527327.1:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly78Gly
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-6629425-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629425
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629425
    reference: chr 11
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.239G>A
  hgvsp: ENSP00000433129.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.239G>A
  hgvsp: ENSP00000403487.2:p.Arg80His
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.239G>A
  hgvsp: ENSP00000435323.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3494C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-199G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*219G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*219G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.239G>A
  hgvsp: ENSP00000299421.3:p.Arg80His
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.239G>A
  hgvsp: ENSP00000379975.2:p.Arg80His
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.525G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.239G>A
  hgvsp: ENSP00000432796.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-199G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.215G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg80His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

11-6629429-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629429
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629429
    reference: chr 11
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.529T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.243T>C
  hgvsp: ENST00000527394.1:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.243T>C
  hgvsp: ENST00000299421.4:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.219T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*223T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-195T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3490A>G
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.243T>C
  hgvsp: ENST00000396751.2:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*223T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.243T>C
  hgvsp: ENST00000528995.1:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.243T>C
  hgvsp: ENST00000420936.2:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.243T>C
  hgvsp: ENST00000527327.1:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-195T>C
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp81Asp
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

11-6629438-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629438
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629438
    reference: chr 11
allele count: 5
allele frequency: 4.119159032491926e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*232G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3481C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.252G>A
  hgvsp: ENST00000527394.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-186G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.252G>A
  hgvsp: ENST00000299421.4:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.252G>A
  hgvsp: ENST00000420936.2:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.252G>A
  hgvsp: ENST00000396751.2:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.252G>A
  hgvsp: ENST00000528995.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.252G>A
  hgvsp: ENST00000527327.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.228G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.538G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-186G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*232G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln84Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-6629445-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629445
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629445
    reference: chr 11
allele count: 17
allele frequency: 1.400514071047255e-4
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3474G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+4C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+4C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+4C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+4C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+4C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+4C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+4C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+4C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+4C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+4C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-179C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-179C>T
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.255+4C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-6629451-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629451
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629451
    reference: chr 11
allele count: 7
allele frequency: 5.767012687427912e-5
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+10A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+10A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+10A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+10A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-173A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+10A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+10A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3468T>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+10A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-173A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+10A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+10A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+10A>G
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15753
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

11-6629453-CTCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629453
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629449
    reference: chr 11
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+15_255+18delCTTC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3462_3465delAGGA
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+15_255+18delCTTC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+15_255+18delCTTC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+15_231+18delCTTC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+15_541+18delCTTC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+15_255+18delCTTC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+15_*235+18delCTTC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-168_90-165delCTTC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+15_*235+18delCTTC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+15_255+18delCTTC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-168_-147-165delCTTC
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+15_255+18delCTTC
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15733
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: CTCCT
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

11-6629454-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629454
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629454
    reference: chr 11
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+13T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+13T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+13T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-170T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+13T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3465A>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+13T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+13T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+13T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-170T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+13T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+13T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+13T>G
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

11-6629458-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629458
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629458
    reference: chr 11
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+17T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+17T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+17T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+17T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+17T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+17T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+17T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3461A>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+17T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-166T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+17T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-166T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+17T>G
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

11-6629459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629459
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629459
    reference: chr 11
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+18C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3460G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-165C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+18C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+18C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+18C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+18C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+18C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+18C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+18C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-165C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+18C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+18C>T
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

11-6629460-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629460
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629460
    reference: chr 11
allele count: 6
allele frequency: 4.943723942455053e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+19G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+19G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+19G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+19G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+19G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-164G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3459C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+19G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+19G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+19G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+19G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+19G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-164G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

11-6629462-C-CATCCACA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629462
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629469
    reference: chr 11
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: CATCCACA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+22_231+28dupATCCACA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+22_*235+28dupATCCACA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+22_255+28dupATCCACA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+22_255+28dupATCCACA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+22_541+28dupATCCACA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+22_255+28dupATCCACA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+22_255+28dupATCCACA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3450_3456dupTGTGGAT
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+22_255+28dupATCCACA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+22_255+28dupATCCACA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+22_*235+28dupATCCACA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

11-6629463-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629463
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629463
    reference: chr 11
allele count: 5
allele frequency: 4.11936265221045e-5
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+22A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+22A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-161A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+22A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+22A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+22A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+22A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+22A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+22A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+22A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+22A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3456T>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-161A>G
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-6629464-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629464
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629464
    reference: chr 11
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3455A>G
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+23T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+23T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+23T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+23T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+23T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-160T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+23T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+23T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+23T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+23T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+23T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-160T>C
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

11-6629471-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629471
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629471
    reference: chr 11
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+30C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+30C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-153C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+30C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+30C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+30C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+30C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3448G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+30C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-153C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+30C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+30C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+30C>T
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

11-6629473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629473
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629473
    reference: chr 11
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-151C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+32C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+32C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+32C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+32C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+32C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3446G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+32C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+32C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+32C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+32C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+32C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-151C>T
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

11-6629478-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629478
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629478
    reference: chr 11
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+37A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-146A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+37A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+37A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+37A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+37A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-146A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+37A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3441T>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+37A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+37A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+37A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+37A>G
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-6629478-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629478
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629478
    reference: chr 11
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-146A>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+37A>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+37A>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+37A>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+37A>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+37A>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+37A>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+37A>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+37A>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-146A>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+37A>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3441T>G
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+37A>C
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

11-6629482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629482
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629482
    reference: chr 11
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+41C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3437G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+41C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-142C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+41C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+41C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+41C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+41C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+41C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+41C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-142C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+41C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+41C>T
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

11-6629493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629493
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629493
    reference: chr 11
allele count: 4
allele frequency: 3.296033224014898e-5
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.255+52G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.255+52G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3426C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.255+52G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-131G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.255+52G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.231+52G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.255+52G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.255+52G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*235+52G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-131G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.541+52G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*235+52G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-6629584-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629584
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629584
    reference: chr 11
allele count: 1
allele frequency: 8.254639107178234e-6
allele num: 121144
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.256-40T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.89T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.542-40T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.256-40T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*236-40T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.256-40T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-40T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.256-40T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3335A>G
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.256-40T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*236-40T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.256-40T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.232-40T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-40T>C
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

11-6629586-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629586
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629586
    reference: chr 11
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-38C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*236-38C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.256-38C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.256-38C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.542-38C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.256-38C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.232-38C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.256-38C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-38C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.91C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.256-38C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.256-38C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3333G>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*236-38C>G
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

11-6629592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629592
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629592
    reference: chr 11
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.256-32G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.256-32G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3327C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*236-32G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.97G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-32G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-32G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.232-32G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*236-32G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.256-32G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.256-32G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.256-32G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.542-32G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.256-32G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

11-6629595-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629595
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629595
    reference: chr 11
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.256-29T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.232-29T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*236-29T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.256-29T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3324A>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-29T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-29T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.100T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.256-29T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.256-29T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.542-29T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.256-29T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.256-29T>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*236-29T>A
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

11-6629607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629607
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629607
    reference: chr 11
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.256-17C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-17C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3312G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*236-17C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.112C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.256-17C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.256-17C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-17C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.256-17C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*236-17C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.256-17C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.256-17C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.542-17C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.232-17C>T
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

11-6629609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629609
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629609
    reference: chr 11
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*236-15G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.256-15G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.232-15G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.256-15G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.256-15G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3310C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.114G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.256-15G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*236-15G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.542-15G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.256-15G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.256-15G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-15G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-15G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-6629611-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629611
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629611
    reference: chr 11
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.116C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.256-13C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.256-13C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-13C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.256-13C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*236-13C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.256-13C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.232-13C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.256-13C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*236-13C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3308G>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.542-13C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.256-13C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-13C>A
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7550
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

11-6629613-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629613
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629613
    reference: chr 11
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.256-11A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3306T>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.256-11A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.256-11A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.256-11A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.232-11A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.118A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*236-11A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.256-11A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*236-11A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.256-11A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-11A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-11A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.542-11A>G
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

11-6629614-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629614
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629614
    reference: chr 11
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3305A>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-147-10T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.119T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.256-10T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.256-10T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*236-10T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.256-10T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.90-10T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.256-10T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.256-10T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*236-10T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.232-10T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.256-10T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.542-10T>G
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-6629629-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629629
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629629
    reference: chr 11
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.261G>A
  hgvsp: ENST00000527327.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.547G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*241G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.95G>A
  hgvsp: ENSP00000434492.1:p.Cys32Tyr
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.134G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.261G>A
  hgvsp: ENST00000396751.2:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.237G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-142G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3290C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.261G>A
  hgvsp: ENST00000527394.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.261G>A
  hgvsp: ENST00000528995.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.261G>A
  hgvsp: ENST00000299421.4:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*241G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.261G>A
  hgvsp: ENST00000420936.2:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys32Tyr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-6629642-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629642
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629642
    reference: chr 11
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.274G>A
  hgvsp: ENSP00000435323.1:p.Asp92Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*254G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.274G>A
  hgvsp: ENSP00000299421.3:p.Asp92Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.108G>A
  hgvsp: ENST00000532063.1:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.274G>A
  hgvsp: ENSP00000403487.2:p.Asp92Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.274G>A
  hgvsp: ENSP00000432796.1:p.Asp92Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.274G>A
  hgvsp: ENSP00000379975.2:p.Asp92Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3277C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.560G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.274G>A
  hgvsp: ENSP00000433129.1:p.Asp92Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-129G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*254G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.250G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.147G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp92Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS

11-6629645-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629645
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629645
    reference: chr 11
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.277A>G
  hgvsp: ENSP00000432796.1:p.Ile93Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.150A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.277A>G
  hgvsp: ENSP00000403487.2:p.Ile93Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.277A>G
  hgvsp: ENSP00000379975.2:p.Ile93Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.277A>G
  hgvsp: ENSP00000433129.1:p.Ile93Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.111A>G
  hgvsp: ENST00000532063.1:c.111A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-126A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.253A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.563A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.277A>G
  hgvsp: ENSP00000435323.1:p.Ile93Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.277A>G
  hgvsp: ENSP00000299421.3:p.Ile93Val
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*257A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*257A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3274T>C
  variant of: http://identifiers.org/hgnc/11543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile93Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-6629647-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629647
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629647
    reference: chr 11
allele count: 5
allele frequency: 4.118751853438334e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.279C>A
  hgvsp: ENST00000396751.2:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.279C>A
  hgvsp: ENST00000420936.2:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-124C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.279C>A
  hgvsp: ENST00000299421.4:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*259C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000524735
  gene symbol: ILK
  hgvsc: ENST00000524735.1:n.565C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*259C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.152C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.279C>A
  hgvsp: ENST00000528995.1:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.113C>A
  hgvsp: ENSP00000434492.1:p.Ser38Ter
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.279C>A
  hgvsp: ENST00000527327.1:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3272G>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.255C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.279C>A
  hgvsp: ENST00000527394.1:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10715
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser38Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

11-6629650-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629650
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629650
    reference: chr 11
allele count: 21
allele frequency: 1.729847279197351e-4
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.282T>C
  hgvsp: ENST00000527327.1:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.282T>C
  hgvsp: ENST00000527394.1:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.282T>C
  hgvsp: ENST00000528995.1:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*262T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*262T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-121T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.258T>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.282T>C
  hgvsp: ENST00000396751.2:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.282T>C
  hgvsp: ENST00000299421.4:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3269A>G
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.116T>C
  hgvsp: ENSP00000434492.1:p.Met39Thr
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.282T>C
  hgvsp: ENST00000420936.2:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.155T>C
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7574
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10713
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met39Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

11-6629654-GTGAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629654
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629650
    reference: chr 11
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.267_270delTGAA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.291_294delTGAA
  hgvsp: ENSP00000299421.3:p.Glu98ThrfsTer46
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.164_167delTGAA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.291_294delTGAA
  hgvsp: ENSP00000379975.2:p.Glu98ThrfsTer46
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.291_294delTGAA
  hgvsp: ENSP00000432796.1:p.Glu98ThrfsTer46
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.291_294delTGAA
  hgvsp: ENSP00000435323.1:p.Glu98ThrfsTer60
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*271_*274delTGAA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*271_*274delTGAA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.291_294delTGAA
  hgvsp: ENSP00000433129.1:p.Glu98ThrfsTer46
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3261_3264delTTCA
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.291_294delTGAA
  hgvsp: ENSP00000403487.2:p.Glu98ThrfsTer46
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*2_*5delTGAA
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-112_-109delTGAA
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu98ThrfsTer46
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: GTGAA
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

11-6629665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629665
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629665
    reference: chr 11
allele count: 32488
allele frequency: 2.677126423521268e-1
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.297C>T
  hgvsp: ENST00000299421.4:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*277C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*277C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.273C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.297C>T
  hgvsp: ENST00000527327.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.170C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-106C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3254G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.297C>T
  hgvsp: ENST00000528995.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.297C>T
  hgvsp: ENST00000527394.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.297C>T
  hgvsp: ENST00000420936.2:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.297C>T
  hgvsp: ENST00000396751.2:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 3.25e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 3.75e1
  variant carriers: 495
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 917
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 8.25e1
  variant carriers: 1813
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 9.25e1
  variant carriers: 1543
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 5.25e1
  variant carriers: 1130
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.75e1
  variant carriers: 1596
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His99His
num of homozygotes: 4516
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

11-6629666-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629666
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629666
    reference: chr 11
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.298G>A
  hgvsp: ENSP00000299421.3:p.Gly100Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.298G>A
  hgvsp: ENSP00000433129.1:p.Gly100Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-105G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.298G>A
  hgvsp: ENSP00000435323.1:p.Gly100Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.298G>A
  hgvsp: ENSP00000379975.2:p.Gly100Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.274G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*278G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.298G>A
  hgvsp: ENSP00000432796.1:p.Gly100Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3253C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.171G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*278G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.298G>A
  hgvsp: ENSP00000403487.2:p.Gly100Arg
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*9G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly100Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/11-6629681-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629681
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629681
    reference: chr 11
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.186C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.313C>A
  hgvsp: ENSP00000435323.1:p.His105Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*24C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.289C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.313C>A
  hgvsp: ENSP00000403487.2:p.His105Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3238G>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*293C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.313C>A
  hgvsp: ENSP00000433129.1:p.His105Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.313C>A
  hgvsp: ENSP00000379975.2:p.His105Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.313C>A
  hgvsp: ENSP00000299421.3:p.His105Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.313C>A
  hgvsp: ENSP00000432796.1:p.His105Asn
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-90C>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*293C>A
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His105Asn
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

11-6629696-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629696
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629696
    reference: chr 11
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.328T>G
  hgvsp: ENSP00000435323.1:p.Trp110Gly
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.328T>G
  hgvsp: ENSP00000379975.2:p.Trp110Gly
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*308T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*39T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.328T>G
  hgvsp: ENSP00000299421.3:p.Trp110Gly
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.328T>G
  hgvsp: ENSP00000403487.2:p.Trp110Gly
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-75T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.328T>G
  hgvsp: ENSP00000433129.1:p.Trp110Gly
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.328T>G
  hgvsp: ENSP00000432796.1:p.Trp110Gly
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*308T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.304T>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3223A>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.201T>G
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11850
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp110Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

11-6629698-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629698
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629698
    reference: chr 11
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-73G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.306G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.330G>A
  hgvsp: ENSP00000379975.2:p.Trp110Ter
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.203G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*310G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.330G>A
  hgvsp: ENSP00000299421.3:p.Trp110Ter
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3221C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*310G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.330G>A
  hgvsp: ENSP00000433129.1:p.Trp110Ter
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.330G>A
  hgvsp: ENSP00000403487.2:p.Trp110Ter
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.330G>A
  hgvsp: ENSP00000435323.1:p.Trp110Ter
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.330G>A
  hgvsp: ENSP00000432796.1:p.Trp110Ter
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11838
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp110Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

11-6629705-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629705
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629705
    reference: chr 11
allele count: 5
allele frequency: 4.119226903494752e-5
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.337G>T
  hgvsp: ENSP00000433129.1:p.Asp113Tyr
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.337G>T
  hgvsp: ENSP00000432796.1:p.Asp113Tyr
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.337G>T
  hgvsp: ENSP00000403487.2:p.Asp113Tyr
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*317G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.210G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3214C>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.337G>T
  hgvsp: ENSP00000379975.2:p.Asp113Tyr
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*317G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.337G>T
  hgvsp: ENSP00000435323.1:p.Asp113Tyr
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.337G>T
  hgvsp: ENSP00000299421.3:p.Asp113Tyr
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-66G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*48G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.313G>T
  variant of: http://identifiers.org/hgnc/6040
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14589
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp113Tyr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS

11-6629729-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629729
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629729
    reference: chr 11
allele count: 2
allele frequency: 1.648940555692967e-5
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3190G>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.327+10C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.224+10C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.351+10C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.351+10C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*331+10C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*62+10C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*331+10C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.351+10C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-52+10C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.351+10C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.351+10C>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.351+10C>T
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11638
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

11-6629738-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629738
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629738
    reference: chr 11
allele count: 6
allele frequency: 4.949269982677555e-5
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*62+19A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.351+19A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.351+19A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3181T>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.351+19A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*331+19A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.351+19A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.351+19A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-52+19A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*331+19A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.351+19A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.224+19A>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.327+19A>T
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

11-6629741-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629741
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629741
    reference: chr 11
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.224+22C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*331+22C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*331+22C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3178G>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.351+22C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.351+22C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.327+22C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-52+22C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.351+22C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*62+22C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.351+22C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.351+22C>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.351+22C>G
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

11-6629746-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629746
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629746
    reference: chr 11
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*331+27G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.224+27G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.351+27G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-52+27G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.351+27G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3173C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.351+27G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.327+27G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.351+27G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.351+27G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*331+27G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.351+27G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*62+27G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

11-6629747-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629747
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629747
    reference: chr 11
allele count: 2
allele frequency: 1.650628063978344e-5
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.224+28A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*331+28A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3172T>C
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.351+28A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*62+28A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.351+28A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.351+28A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-52+28A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.351+28A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.351+28A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.327+28A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*331+28A>G
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.351+28A>G
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10892
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

11-6629750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629750
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629750
    reference: chr 11
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*331+31G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.351+31G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-52+31G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*62+31G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3169C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.351+31G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.327+31G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.351+31G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.351+31G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*331+31G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.351+31G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.224+31G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.351+31G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4923
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

11-6629751-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629751
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629751
    reference: chr 11
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.351+32G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.351+32G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.351+32G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.224+32G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*331+32G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*331+32G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-52+32G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3168C>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.351+32G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.351+32G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.351+32G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*62+32G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.327+32G>T
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12685
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

11-6629754-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629754
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629754
    reference: chr 11
allele count: 1
allele frequency: 8.257774694875225e-6
allele num: 121098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.351+35G>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3165C>G
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.351+35G>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.224+35G>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-52+35G>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.351+35G>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.351+35G>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.351+35G>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*331+35G>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*62+35G>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.327+35G>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*331+35G>C
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.351+35G>C
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-6629758-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629758
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629758
    reference: chr 11
allele count: 293
allele frequency: 2.420647378595859e-3
allele num: 121042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*331+39G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.224+39G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-52+39G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3161C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.351+39G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*62+39G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.351+39G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.327+39G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.351+39G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.351+39G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*331+39G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.351+39G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.351+39G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10373
  bin: 3.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
num of homozygotes: 3
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

11-6629882-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629882
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629882
    reference: chr 11
allele count: 299
allele frequency: 2.46366303022313e-3
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*332-42G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.351+163G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.352-42G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.352-42G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*63-42G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.352-42G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.225-42G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.352-42G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.327+163G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*332-42G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.352-42G>A
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3037C>T
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-51-42G>A
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12015
  bin: 9.75e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 9.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

11-6629885-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6629885
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 6629885
    reference: chr 11
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000403487
  ensembl transcript: ENST00000420936
  gene symbol: ILK
  hgvsc: ENST00000420936.2:c.352-39G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000433129
  ensembl transcript: ENST00000527394
  gene symbol: ILK
  hgvsc: ENST00000527394.1:c.352-39G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000528784
  gene symbol: ILK
  hgvsc: ENST00000528784.1:n.225-39G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000439606
  ensembl transcript: ENST00000537806
  gene symbol: ILK
  hgvsc: ENST00000537806.1:c.-51-39G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000434492
  ensembl transcript: ENST00000532063
  gene symbol: ILK
  hgvsc: ENST00000532063.1:c.*63-39G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000436062
  ensembl transcript: ENST00000527121
  gene symbol: ILK
  hgvsc: ENST00000527121.1:c.*332-39G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl transcript: ENST00000526318
  gene symbol: ILK
  hgvsc: ENST00000526318.1:n.327+166G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166337
  ensembl transcript: ENST00000526743
  gene symbol: TAF10
  hgvsc: ENST00000526743.1:n.3034C>A
  variant of: http://identifiers.org/hgnc/11543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000299421
  ensembl transcript: ENST00000299421
  gene symbol: ILK
  hgvsc: ENST00000299421.4:c.352-39G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432796
  ensembl transcript: ENST00000527327
  gene symbol: ILK
  hgvsc: ENST00000527327.1:c.352-39G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000432617
  ensembl transcript: ENST00000526114
  gene symbol: ILK
  hgvsc: ENST00000526114.1:c.*332-39G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000435323
  ensembl transcript: ENST00000528995
  gene symbol: ILK
  hgvsc: ENST00000528995.1:c.351+166G>T
  variant of: http://identifiers.org/hgnc/6040
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166333
  ensembl protein: ENSP00000379975
  ensembl transcript: ENST00000396751
  gene symbol: ILK
  hgvsc: ENST00000396751.2:c.352-39G>T
  variant of: http://identifiers.org/hgnc/6040
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11911
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 91
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1258
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1584
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 879
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 607
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8347
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4947
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13375
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17627
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.997e1

DP
type: SiteQuality
SIO_000300: 1.962197e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.969999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.244e0

GenotypeDepth
all individuals: 2133
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1258
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1584
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16998
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8346
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13374
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.326e0

QD
type: SiteQuality
SIO_000300: 6.64e0

VQSLOD
type: SiteQuality
SIO_000300: -9.45e-1

DP
type: SiteQuality
SIO_000300: 1.962194e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 3.581e0

GenotypeDepth
all individuals: 1583
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2135
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5426
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17621
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13375
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4946
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.853e0

QD
type: SiteQuality
SIO_000300: 5.35e0

VQSLOD
type: SiteQuality
SIO_000300: -1.583e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 1.072e0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.962555e6

GenotypeDepth
all individuals: 3132
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1585
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11477
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17645
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13375
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2505
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6083
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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African
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South Asian
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Latino
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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European (Finnish)
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MQRankSum
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DP
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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MQ
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DP
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ClippingRankSum
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MQRankSum
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QD
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

East Asian
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South Asian
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European (Finnish)
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African
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Latino
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Other
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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MQ
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MQRankSum
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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MQRankSum
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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South Asian
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East Asian
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QD
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16510
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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Other
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FS
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DP
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InbreedingCoeff
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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South Asian
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European (Finnish)
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Other
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African
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DP
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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Other
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African
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QD
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ReadPosRankSum
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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MQ
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FS
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InbreedingCoeff
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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QD
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DP
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MQRankSum
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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African
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East Asian
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South Asian
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VQSLOD
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QD
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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allele num: 66728
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Latino
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Other
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East Asian
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European (Finnish)
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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QD
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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Other
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African
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European (Non-Finnish)
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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MQ
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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South Asian
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Other
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QD
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DP
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MQRankSum
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VQSLOD
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 8.088745088976196e-4
allele num: 8654
num of homozygotes: 0

Other
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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MQ
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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QD
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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South Asian
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East Asian
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Other
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European (Finnish)
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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FS
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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East Asian
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South Asian
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ClippingRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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African
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East Asian
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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FS
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QD
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DP
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Other
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Latino
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South Asian
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European (Finnish)
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DP
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QD
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

African
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allele num: 10402
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Latino
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Other
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East Asian
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South Asian
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European (Finnish)
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QD
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FS
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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European (Finnish)
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Other
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African
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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VQSLOD
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DP
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MQ
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QD
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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MQ
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ClippingRankSum
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VQSLOD
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DP
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QD
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

Other
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African
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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MQ
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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VQSLOD
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DP
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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VQSLOD
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ClippingRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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East Asian
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allele num: 8654
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African
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European (Finnish)
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South Asian
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DP
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SIO_000300: 1.961168e6

MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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MQ
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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DP
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ReadPosRankSum
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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FS
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QD
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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FS
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BaseQRankSum
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VQSLOD
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DP
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MQ
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QD
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GenotypeQuality
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European (Non-Finnish)
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VQSLOD
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MQ
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European (Non-Finnish)
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Latino
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African
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DP
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FS
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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DP
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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FS
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ClippingRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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FS
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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East Asian
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African
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South Asian
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Other
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Latino
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQRankSum
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DP
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MQ
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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QD
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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Latino
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European (Non-Finnish)
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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MQRankSum
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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European (Non-Finnish)
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Latino
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African
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South Asian
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allele frequency: 6.05766900896535e-5
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num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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DP
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QD
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ClippingRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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DP
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QD
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MQ
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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African
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South Asian
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Other
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European (Finnish)
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East Asian
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
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allele num: 66728
num of homozygotes: 0

European (Finnish)
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South Asian
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Other
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Latino
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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MQ
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FS
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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African
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Latino
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Other
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European (Non-Finnish)
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East Asian
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VQSLOD
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MQRankSum
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QD
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FS
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DP
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Other
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East Asian
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South Asian
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European (Non-Finnish)
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Latino
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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FS
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DP
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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African
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1428

GenotypeDepth
all individuals: 13402
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variant carriers: 11541

GenotypeDepth
all individuals: 7657
bin: 2.75e1
variant carriers: 122

GenotypeDepth
all individuals: 1972
bin: 5.75e1
variant carriers: 1267

GenotypeDepth
all individuals: 2130
bin: 7.25e1
variant carriers: 1711

GenotypeDepth
all individuals: 3289
bin: 4.25e1
variant carriers: 692

GenotypeQuality
all individuals: 1124
bin: 8.75e1
variant carriers: 28

GenotypeQuality
all individuals: 38552
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variant carriers: 27758

GenotypeQuality
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bin: 2.25e1
variant carriers: 4

GenotypeQuality
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bin: 4.25e1
variant carriers: 10

GenotypeQuality
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bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 7

GenotypeQuality
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bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 2

GenotypeQuality
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bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9211
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2080
bin: 8.25e1
variant carriers: 23

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1824
bin: 7.25e1
variant carriers: 19

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1681
bin: 9.25e1
variant carriers: 42

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 13

GenotypeQuality
all individuals: 2481
bin: 7.75e1
variant carriers: 24

GenotypeQuality
all individuals: 3619
bin: 6.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 17572
allele frequency: 2.633771995563416e-1
allele num: 66718
num of homozygotes: 2315

European (Finnish)
type: Population
allele count: 1669
allele frequency: 2.524962178517398e-1
allele num: 6610
num of homozygotes: 229

East Asian
type: Population
allele count: 2964
allele frequency: 3.436123348017621e-1
allele num: 8626
num of homozygotes: 498

African
type: Population
allele count: 3988
allele frequency: 3.833878100365314e-1
allele num: 10402
num of homozygotes: 752

Latino
type: Population
allele count: 2382
allele frequency: 2.057350146830195e-1
allele num: 11578
num of homozygotes: 255

South Asian
type: Population
allele count: 3703
allele frequency: 2.242611434108527e-1
allele num: 16512
num of homozygotes: 444

Other
type: Population
allele count: 210
allele frequency: 2.312775330396476e-1
allele num: 908
num of homozygotes: 23

VQSLOD
type: SiteQuality
SIO_000300: 6.53e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-1

DP
type: SiteQuality
SIO_000300: 4.169382e6

GenotypeDepth
all individuals: 1432
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 647
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variant carriers: 0

GenotypeDepth
all individuals: 755
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variant carriers: 0

GenotypeDepth
all individuals: 875
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variant carriers: 0

GenotypeDepth
all individuals: 709
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variant carriers: 0

GenotypeDepth
all individuals: 783
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 16656
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 20254
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3896
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495324862143371e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.053e1

FS
type: SiteQuality
SIO_000300: 3.036e0

DP
type: SiteQuality
SIO_000300: 2.554939e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeDepth
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bin: 2.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6742
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3065
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 20223
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4700
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variant carriers: 0

GenotypeQuality
all individuals: 16691
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 3298
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.756e0

QD
type: SiteQuality
SIO_000300: 1.31e1

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

DP
type: SiteQuality
SIO_000300: 2.553341e6

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.662e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.59e-1

GenotypeDepth
all individuals: 646
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7552
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variant carriers: 0

GenotypeDepth
all individuals: 14582
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1974
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variant carriers: 0

GenotypeDepth
all individuals: 708
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variant carriers: 0

GenotypeDepth
all individuals: 696
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 3880
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GenotypeQuality
all individuals: 16689
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 3293
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variant carriers: 0

GenotypeQuality
all individuals: 20200
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 4687
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variant carriers: 1

GenotypeQuality
all individuals: 3063
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.551646e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

FS
type: SiteQuality
SIO_000300: 4.957e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 3250
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7550
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variant carriers: 0

GenotypeDepth
all individuals: 4997
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 867
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variant carriers: 0

GenotypeDepth
all individuals: 708
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variant carriers: 0

GenotypeDepth
all individuals: 752
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variant carriers: 0

GenotypeQuality
all individuals: 3292
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variant carriers: 0

GenotypeQuality
all individuals: 16685
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 20192
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variant carriers: 2

GenotypeQuality
all individuals: 2014
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variant carriers: 0

GenotypeQuality
all individuals: 4682
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GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 3883
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.83e-1

QD
type: SiteQuality
SIO_000300: 2.727e1

BaseQRankSum
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SIO_000300: -1.57e0

VQSLOD
type: SiteQuality
SIO_000300: -2.395e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

FS
type: SiteQuality
SIO_000300: 2.044e0

DP
type: SiteQuality
SIO_000300: 2.55137e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 3455
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1422
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variant carriers: 1

GenotypeDepth
all individuals: 696
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variant carriers: 0

GenotypeDepth
all individuals: 646
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variant carriers: 0

GenotypeDepth
all individuals: 708
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variant carriers: 0

GenotypeDepth
all individuals: 4996
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 3060
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 2010
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variant carriers: 0

GenotypeQuality
all individuals: 4669
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GenotypeQuality
all individuals: 30
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 6695
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GenotypeQuality
all individuals: 40
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 20186
bin: 9.75e1
variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.59e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.550172e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.895e0

FS
type: SiteQuality
SIO_000300: 5.56e-1

GenotypeDepth
all individuals: 708
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1972
bin: 5.25e1
variant carriers: 0

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 696
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 1999
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variant carriers: 0

GenotypeQuality
all individuals: 139
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 15988
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 3234
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

FS
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 4.812319538017325e-4
allele num: 10390
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11554
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European (Finnish)
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num of homozygotes: 0

East Asian
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FS
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MQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
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allele num: 10388
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Other
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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VQSLOD
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FS
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MQRankSum
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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African
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Latino
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InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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MQ
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VQSLOD
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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South Asian
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Latino
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Other
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African
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FS
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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DP
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele num: 6610
num of homozygotes: 0

East Asian
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African
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Other
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Latino
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South Asian
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European (Non-Finnish)
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QD
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FS
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Other
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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VQSLOD
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QD
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MQ
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5949
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3060
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

DP
type: SiteQuality
SIO_000300: 2.495029e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.218e0

QD
type: SiteQuality
SIO_000300: 3.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.212e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.318e0

VQSLOD
type: SiteQuality
SIO_000300: -2.476e0

GenotypeDepth
all individuals: 3227
bin: 1.75e1
variant carriers: 13

GenotypeDepth
all individuals: 11772
bin: 2.75e1
variant carriers: 33

GenotypeDepth
all individuals: 864
bin: 6.75e1
variant carriers: 7

GenotypeDepth
all individuals: 700
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3017
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11780
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4425
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20283
bin: 9.75e1
variant carriers: 290

GenotypeQuality
all individuals: 3736
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 267
allele frequency: 2.573245952197379e-2
allele num: 10376
num of homozygotes: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.126711735136072e-3
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.802451333813987e-4
allele num: 66576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.487519e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.93e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.508e0

QD
type: SiteQuality
SIO_000300: 1.456e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeDepth
all individuals: 5804
bin: 7.75e1
variant carriers: 15

GenotypeDepth
all individuals: 4991
bin: 8.25e1
variant carriers: 18

GenotypeDepth
all individuals: 5288
bin: 6.25e1
variant carriers: 8

GenotypeDepth
all individuals: 4282
bin: 8.75e1
variant carriers: 25

GenotypeQuality
all individuals: 36272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.75e1
variant carriers: 298

GenotypeQuality
all individuals: 3296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15099
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3035
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 21
allele frequency: 3.175083156939824e-3
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 265
allele frequency: 3.972775245862317e-3
allele num: 66704
num of homozygotes: 1

African
type: Population
allele count: 6
allele frequency: 5.771450557906887e-4
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.679343e6

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

QD
type: SiteQuality
SIO_000300: 1.37e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

GenotypeDepth
all individuals: 5815
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6105
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 750
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1874
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36499
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3305
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0