12-78392086-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392086
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392086
    reference: chr 12
allele count: 1
allele frequency: 8.786882941145458e-6
allele num: 113806
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.741-31T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.211-31T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.211-31T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.741-31T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.741-31T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.741-31T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.741-31T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13447
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

12-78392092-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392092
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392092
    reference: chr 12
allele count: 1
allele frequency: 8.76623945859705e-6
allele num: 114074
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.741-25T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.211-25T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.741-25T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.741-25T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.211-25T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.741-25T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.741-25T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13457
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4821
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 501
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-78392097-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392097
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392097
    reference: chr 12
allele count: 1
allele frequency: 8.742787200559538e-6
allele num: 114380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.741-20T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.741-20T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.741-20T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.211-20T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.741-20T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.741-20T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.211-20T>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11273
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

12-78392106-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392106
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392106
    reference: chr 12
allele count: 1
allele frequency: 8.679048776254123e-6
allele num: 115220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.741-11T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.741-11T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.741-11T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.741-11T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.741-11T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.211-11T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.211-11T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6082
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4295
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13464
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

12-78392107-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392107
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392107
    reference: chr 12
allele count: 1
allele frequency: 8.667313826099016e-6
allele num: 115376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.741-10A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.741-10A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.211-10A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.741-10A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.211-10A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.741-10A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.741-10A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13464
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum

12-78392113-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392113
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392113
    reference: chr 12
allele count: 1
allele frequency: 8.588556607176597e-6
allele num: 116434
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.741-4T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.211-4T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.741-4T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.741-4T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.211-4T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.741-4T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.741-4T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13475
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 2.25e1
  variant carriers: 0
hgvs: c.741-4T>C
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

12-78392123-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392123
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392123
    reference: chr 12
allele count: 1
allele frequency: 8.475007203756124e-6
allele num: 117994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.217A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.747A>G
  hgvsp: ENST00000536525.2:c.747A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.747A>G
  hgvsp: ENST00000397909.2:c.747A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.747A>G
  hgvsp: ENST00000266692.7:c.747A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.217A>G
  hgvsp: ENST00000550503.1:c.217A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.747A>G
  hgvsp: ENST00000228327.6:c.747A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.747A>G
  hgvsp: ENST00000549464.1:c.747A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17411
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro249Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

12-78392126-G-GCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392126
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392129
    reference: chr 12
allele count: 2
allele frequency: 1.690188456012846e-5
allele num: 118330
alternate allele: GCCC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.751_753dupCCC
  hgvsp: ENSP00000446628.1:p.Pro251dup
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.221_223dupCCC
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.751_753dupCCC
  hgvsp: ENSP00000381007.2:p.Pro251dup
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.751_753dupCCC
  hgvsp: ENSP00000266692.7:p.Pro251dup
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.751_753dupCCC
  hgvsp: ENSP00000228327.6:p.Pro251dup
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.751_753dupCCC
  hgvsp: ENSP00000446132.2:p.Pro251dup
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.221_223dupCCC
  hgvsp: ENSP00000448037.1:p.Pro75dup
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13505
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro251dup
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

12-78392128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392128
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392128
    reference: chr 12
allele count: 1
allele frequency: 8.434405627435435e-6
allele num: 118562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.752C>T
  hgvsp: ENSP00000381007.2:p.Pro251Leu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.752C>T
  hgvsp: ENSP00000446628.1:p.Pro251Leu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.222C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.752C>T
  hgvsp: ENSP00000228327.6:p.Pro251Leu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.752C>T
  hgvsp: ENSP00000266692.7:p.Pro251Leu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.752C>T
  hgvsp: ENSP00000446132.2:p.Pro251Leu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.222C>T
  hgvsp: ENSP00000448037.1:p.Pro75Leu
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5046
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18310
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4440
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro251Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

12-78392129-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392129
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392129
    reference: chr 12
allele count: 1
allele frequency: 8.432698632216282e-6
allele num: 118586
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.753C>G
  hgvsp: ENST00000536525.2:c.753C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.223C>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.753C>G
  hgvsp: ENST00000266692.7:c.753C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.753C>G
  hgvsp: ENST00000228327.6:c.753C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.753C>G
  hgvsp: ENST00000549464.1:c.753C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.753C>G
  hgvsp: ENST00000397909.2:c.753C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.223C>G
  hgvsp: ENST00000550503.1:c.223C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7513
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13507
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5044
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3555
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro251Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

12-78392132-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392132
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392132
    reference: chr 12
allele count: 3
allele frequency: 2.525635197252109e-5
allele num: 118782
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.756T>A
  hgvsp: ENST00000536525.2:c.756T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.756T>A
  hgvsp: ENST00000228327.6:c.756T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.756T>A
  hgvsp: ENST00000549464.1:c.756T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.226T>A
  hgvsp: ENST00000550503.1:c.226T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.756T>A
  hgvsp: ENST00000397909.2:c.756T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.756T>A
  hgvsp: ENST00000266692.7:c.756T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.226T>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4450
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser252Ser
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

12-78392144-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392144
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392144
    reference: chr 12
allele count: 1
allele frequency: 8.369041242635244e-6
allele num: 119488
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.238T>C
  hgvsp: ENST00000550503.1:c.238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.768T>C
  hgvsp: ENST00000266692.7:c.768T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.768T>C
  hgvsp: ENST00000397909.2:c.768T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.768T>C
  hgvsp: ENST00000549464.1:c.768T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.238T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.768T>C
  hgvsp: ENST00000536525.2:c.768T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.768T>C
  hgvsp: ENST00000228327.6:c.768T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala256Ala
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

12-78392145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392145
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392145
    reference: chr 12
allele count: 1
allele frequency: 8.368621018628551e-6
allele num: 119494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.769G>A
  hgvsp: ENSP00000266692.7:p.Ala257Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.239G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.769G>A
  hgvsp: ENSP00000446132.2:p.Ala257Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.769G>A
  hgvsp: ENSP00000228327.6:p.Ala257Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.769G>A
  hgvsp: ENSP00000381007.2:p.Ala257Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.769G>A
  hgvsp: ENSP00000446628.1:p.Ala257Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.239G>A
  hgvsp: ENSP00000448037.1:p.Ala81Thr
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13555
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala257Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

12-78392155-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392155
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392155
    reference: chr 12
allele count: 1
allele frequency: 8.3462700519138e-6
allele num: 119814
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.779G>A
  hgvsp: ENSP00000446132.2:p.Ser260Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.779G>A
  hgvsp: ENSP00000446628.1:p.Ser260Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.249G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.779G>A
  hgvsp: ENSP00000266692.7:p.Ser260Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.779G>A
  hgvsp: ENSP00000381007.2:p.Ser260Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.249G>A
  hgvsp: ENSP00000448037.1:p.Ser84Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.779G>A
  hgvsp: ENSP00000228327.6:p.Ser260Asn
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser260Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

12-78392158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392158
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392158
    reference: chr 12
allele count: 1
allele frequency: 8.34306691139663e-6
allele num: 119860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.252G>A
  hgvsp: ENSP00000448037.1:p.Ser85Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.782G>A
  hgvsp: ENSP00000266692.7:p.Ser261Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.252G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.782G>A
  hgvsp: ENSP00000228327.6:p.Ser261Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.782G>A
  hgvsp: ENSP00000381007.2:p.Ser261Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.782G>A
  hgvsp: ENSP00000446132.2:p.Ser261Asn
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.782G>A
  hgvsp: ENSP00000446628.1:p.Ser261Asn
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser261Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

12-78392163-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392163
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392163
    reference: chr 12
allele count: 1
allele frequency: 8.332083520805212e-6
allele num: 120018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.787G>A
  hgvsp: ENSP00000381007.2:p.Val263Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.787G>A
  hgvsp: ENSP00000266692.7:p.Val263Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.257G>A
  hgvsp: ENSP00000448037.1:p.Val87Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.787G>A
  hgvsp: ENSP00000446132.2:p.Val263Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.257G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.787G>A
  hgvsp: ENSP00000228327.6:p.Val263Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.787G>A
  hgvsp: ENSP00000446628.1:p.Val263Ile
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13580
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val263Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-78392166-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392166
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392166
    reference: chr 12
allele count: 1
allele frequency: 8.331250520703158e-6
allele num: 120030
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.790C>A
  hgvsp: ENSP00000446132.2:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.790C>A
  hgvsp: ENSP00000266692.7:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.260C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.790C>A
  hgvsp: ENSP00000381007.2:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.260C>A
  hgvsp: ENSP00000448037.1:p.Gln88Lys
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.790C>A
  hgvsp: ENSP00000446628.1:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.790C>A
  hgvsp: ENSP00000228327.6:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6593
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4560
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln264Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

12-78392178-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392178
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392178
    reference: chr 12
allele count: 1
allele frequency: 8.318913882603488e-6
allele num: 120208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.272A>G
  hgvsp: ENSP00000448037.1:p.Asn92Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.272A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.802A>G
  hgvsp: ENSP00000266692.7:p.Asn268Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.802A>G
  hgvsp: ENSP00000381007.2:p.Asn268Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.802A>G
  hgvsp: ENSP00000446628.1:p.Asn268Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.802A>G
  hgvsp: ENSP00000228327.6:p.Asn268Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.802A>G
  hgvsp: ENSP00000446132.2:p.Asn268Asp
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3718
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4606
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn268Asp
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

12-78392185-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392185
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392185
    reference: chr 12
allele count: 1
allele frequency: 8.313104778372627e-6
allele num: 120292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.809A>G
  hgvsp: ENSP00000446628.1:p.Asn270Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.809A>G
  hgvsp: ENSP00000446132.2:p.Asn270Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.279A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.809A>G
  hgvsp: ENSP00000381007.2:p.Asn270Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.809A>G
  hgvsp: ENSP00000228327.6:p.Asn270Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.809A>G
  hgvsp: ENSP00000266692.7:p.Asn270Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.279A>G
  hgvsp: ENSP00000448037.1:p.Asn94Ser
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4602
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13611
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4617
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn270Ser
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

12-78392186-TAGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392186
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392183
    reference: chr 12
allele count: 1
allele frequency: 8.311446524153063e-6
allele num: 120316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.813_815delGAG
  hgvsp: ENSP00000266692.7:p.Arg272del
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.813_815delGAG
  hgvsp: ENSP00000446132.2:p.Arg272del
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.813_815delGAG
  hgvsp: ENSP00000446628.1:p.Arg272del
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.283_285delGAG
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.813_815delGAG
  hgvsp: ENSP00000228327.6:p.Arg272del
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.283_285delGAG
  hgvsp: ENSP00000448037.1:p.Arg96del
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.813_815delGAG
  hgvsp: ENSP00000381007.2:p.Arg272del
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13610
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5275
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg272del
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TAGG
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

12-78392189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392189
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392189
    reference: chr 12
allele count: 1
allele frequency: 8.310479514667997e-6
allele num: 120330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.813G>A
  hgvsp: ENST00000549464.1:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.813G>A
  hgvsp: ENST00000397909.2:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.283G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.283G>A
  hgvsp: ENST00000550503.1:c.283G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.813G>A
  hgvsp: ENST00000266692.7:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.813G>A
  hgvsp: ENST00000536525.2:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.813G>A
  hgvsp: ENST00000228327.6:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13615
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg271Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

12-78392209-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392209
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392209
    reference: chr 12
allele count: 5
allele frequency: 4.151789421240555e-5
allele num: 120430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.303G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.833G>T
  hgvsp: ENSP00000381007.2:p.Ser278Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.833G>T
  hgvsp: ENSP00000228327.6:p.Ser278Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.833G>T
  hgvsp: ENSP00000266692.7:p.Ser278Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.833G>T
  hgvsp: ENSP00000446628.1:p.Ser278Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.303G>T
  hgvsp: ENSP00000448037.1:p.Ser102Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.833G>T
  hgvsp: ENSP00000446132.2:p.Ser278Ile
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4634
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13630
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Ser278Ile
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-78392216-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392216
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392216
    reference: chr 12
allele count: 1
allele frequency: 8.30827005200977e-6
allele num: 120362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.310C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.310C>A
  hgvsp: ENSP00000448037.1:p.Asp104Glu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.840C>A
  hgvsp: ENSP00000381007.2:p.Asp280Glu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.840C>A
  hgvsp: ENSP00000266692.7:p.Asp280Glu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.840C>A
  hgvsp: ENSP00000446132.2:p.Asp280Glu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.840C>A
  hgvsp: ENSP00000228327.6:p.Asp280Glu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.840C>A
  hgvsp: ENSP00000446628.1:p.Asp280Glu
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13629
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4635
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19836
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp280Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

12-78392218-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392218
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392218
    reference: chr 12
allele count: 1
allele frequency: 8.307993951780402e-6
allele num: 120366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.842A>G
  hgvsp: ENSP00000381007.2:p.Lys281Arg
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.842A>G
  hgvsp: ENSP00000446132.2:p.Lys281Arg
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.312A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.842A>G
  hgvsp: ENSP00000446628.1:p.Lys281Arg
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.842A>G
  hgvsp: ENSP00000266692.7:p.Lys281Arg
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.312A>G
  hgvsp: ENSP00000448037.1:p.Lys105Arg
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.842A>G
  hgvsp: ENSP00000228327.6:p.Lys281Arg
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5315
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys281Arg
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

12-78392221-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392221
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392221
    reference: chr 12
allele count: 1
allele frequency: 8.312137383006666e-6
allele num: 120306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.315A>G
  hgvsp: ENSP00000448037.1:p.Asn106Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.845A>G
  hgvsp: ENSP00000266692.7:p.Asn282Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.845A>G
  hgvsp: ENSP00000446628.1:p.Asn282Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.315A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.845A>G
  hgvsp: ENSP00000228327.6:p.Asn282Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.845A>G
  hgvsp: ENSP00000381007.2:p.Asn282Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.845A>G
  hgvsp: ENSP00000446132.2:p.Asn282Ser
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn282Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-78392226-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392226
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392226
    reference: chr 12
allele count: 1
allele frequency: 8.3166999334664e-6
allele num: 120240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.850C>G
  hgvsp: ENSP00000228327.6:p.Pro284Ala
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.320C>G
  hgvsp: ENSP00000448037.1:p.Pro108Ala
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.850C>G
  hgvsp: ENSP00000446628.1:p.Pro284Ala
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.850C>G
  hgvsp: ENSP00000381007.2:p.Pro284Ala
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.320C>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.850C>G
  hgvsp: ENSP00000266692.7:p.Pro284Ala
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.850C>G
  hgvsp: ENSP00000446132.2:p.Pro284Ala
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13631
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro284Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

12-78392233-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392233
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392233
    reference: chr 12
allele count: 6
allele frequency: 4.999750012499375e-5
allele num: 120006
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.857A>G
  hgvsp: ENSP00000228327.6:p.Asn286Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.857A>G
  hgvsp: ENSP00000446132.2:p.Asn286Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.327A>G
  hgvsp: ENSP00000448037.1:p.Asn110Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.857A>G
  hgvsp: ENSP00000266692.7:p.Asn286Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.857A>G
  hgvsp: ENSP00000381007.2:p.Asn286Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.327A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.857A>G
  hgvsp: ENSP00000446628.1:p.Asn286Ser
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6657
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3716
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4633
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn286Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

12-78392238-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392238
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392238
    reference: chr 12
allele count: 3
allele frequency: 2.504424483253748e-5
allele num: 119788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.862G>A
  hgvsp: ENSP00000228327.6:p.Ala288Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.862G>A
  hgvsp: ENSP00000381007.2:p.Ala288Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.862G>A
  hgvsp: ENSP00000266692.7:p.Ala288Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.332G>A
  hgvsp: ENSP00000448037.1:p.Ala112Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.862G>A
  hgvsp: ENSP00000446628.1:p.Ala288Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.862G>A
  hgvsp: ENSP00000446132.2:p.Ala288Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.332G>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13634
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3713
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala288Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ

12-78392249-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392249
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392249
    reference: chr 12
allele count: 9
allele frequency: 7.554137988920598e-5
allele num: 119140
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.873C>T
  hgvsp: ENST00000536525.2:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.873C>T
  hgvsp: ENST00000266692.7:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.873C>T
  hgvsp: ENST00000549464.1:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.873C>T
  hgvsp: ENST00000397909.2:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.343C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.873C>T
  hgvsp: ENST00000228327.6:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.343C>T
  hgvsp: ENST00000550503.1:c.343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13093
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18105
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4628
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6568
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn291Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

12-78392255-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392255
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392255
    reference: chr 12
allele count: 1
allele frequency: 8.42516766083645e-6
allele num: 118692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.349A>G
  hgvsp: ENST00000550503.1:c.349A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.879A>G
  hgvsp: ENST00000397909.2:c.879A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.879A>G
  hgvsp: ENST00000228327.6:c.879A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.879A>G
  hgvsp: ENST00000536525.2:c.879A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.879A>G
  hgvsp: ENST00000549464.1:c.879A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.349A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.879A>G
  hgvsp: ENST00000266692.7:c.879A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4630
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
hgvs: c.879A>G
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

12-78392267-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392267
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392267
    reference: chr 12
allele count: 1
allele frequency: 8.475438180153914e-6
allele num: 117988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.880+11G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.880+11G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.880+11G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.880+11G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.350+11G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.350+11G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.880+11G>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

12-78392269-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392269
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392269
    reference: chr 12
allele count: 1
allele frequency: 8.484498820654664e-6
allele num: 117862
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.880+13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.880+13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.880+13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.350+13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.880+13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.350+13T>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.880+13T>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11727
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3684
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

12-78392271-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392271
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392271
    reference: chr 12
allele count: 1
allele frequency: 8.496465470364328e-6
allele num: 117696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.880+15C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.880+15C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.350+15C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.880+15C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.880+15C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.880+15C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.350+15C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

12-78392274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392274
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392274
    reference: chr 12
allele count: 109
allele frequency: 9.282916027933913e-4
allele num: 117420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.350+18C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.880+18C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.880+18C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.880+18C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.880+18C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.350+18C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.880+18C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10968
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11714
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13351
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6450
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

12-78392274-CATT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392274
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392271
    reference: chr 12
allele count: 1
allele frequency: 8.51643672287515e-6
allele num: 117420
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.880+21_880+23delTAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.350+21_350+23delTAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.880+21_880+23delTAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.880+21_880+23delTAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.350+21_350+23delTAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.880+21_880+23delTAT
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.880+21_880+23delTAT
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13732
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6450
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15353
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: CATT
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-78392290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392290
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392290
    reference: chr 12
allele count: 2
allele frequency: 1.715383559763963e-5
allele num: 116592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.350+34C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.880+34C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.880+34C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.880+34C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.880+34C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.880+34C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.350+34C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6425
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

12-78392295-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392295
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392295
    reference: chr 12
allele count: 1
allele frequency: 8.602890571231935e-6
allele num: 116240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.880+39T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.880+39T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.350+39T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.880+39T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.880+39T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.880+39T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.350+39T>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6407
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13665
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14293
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

12-78392298-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392298
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392298
    reference: chr 12
allele count: 1
allele frequency: 8.606888953918716e-6
allele num: 116186
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.350+42G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.880+42G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.880+42G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.350+42G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.880+42G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.880+42G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.880+42G>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11686
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

12-78392303-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78392303
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78392303
    reference: chr 12
allele count: 79
allele frequency: 6.825761634035494e-4
allele num: 115738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.880+47G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.350+47G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.880+47G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.880+47G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.880+47G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.350+47G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.880+47G>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10336
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 12911
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11676
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5275
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 2
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

12-78400149-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400149
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400149
    reference: chr 12
allele count: 1
allele frequency: 9.464856986010941e-6
allele num: 105654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-50T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-50T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-50T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-50T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-108T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-50T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-50T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6635
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3801
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

12-78400153-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400153
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400153
    reference: chr 12
allele count: 2
allele frequency: 1.892648951472481e-5
allele num: 105672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-46C>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-46C>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-46C>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-46C>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-46C>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-46C>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-104C>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12588
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3831
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

12-78400154-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400154
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400154
    reference: chr 12
allele count: 25
allele frequency: 2.360405612100383e-4
allele num: 105914
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-45A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-45A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-45A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-45A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-103A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-45A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-45A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12702
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16850
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6539
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3841
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

12-78400157-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400157
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400157
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 106086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-42A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-100A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-42A>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3994
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

12-78400163-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400163
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400163
    reference: chr 12
allele count: 5
allele frequency: 4.694659355517163e-5
allele num: 106504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-36C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-36C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-36C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-36C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-94C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-36C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-36C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13626
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

12-78400164-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400164
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400164
    reference: chr 12
allele count: 2
allele frequency: 1.872378669862193e-5
allele num: 106816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-35G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-35G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-93G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-35G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-35G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-35G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-35G>A
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5259
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22726
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4280
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

12-78400164-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400164
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400164
    reference: chr 12
allele count: 13
allele frequency: 1.217046135410425e-4
allele num: 106816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-35G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-35G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-35G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-93G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-35G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-35G>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-35G>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21079
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13812
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5259
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22726
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

12-78400171-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400171
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400171
    reference: chr 12
allele count: 1
allele frequency: 9.237021984112322e-6
allele num: 108260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-28C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-86C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-28C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-28C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-28C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-28C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-28C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7339
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

12-78400173-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400173
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400173
    reference: chr 12
allele count: 2
allele frequency: 1.836344939033348e-5
allele num: 108912
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-26T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-26T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-26T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-84T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-26T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-26T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-26T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
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genotype quality: GenotypeQuality
  all individuals: 155
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-78400179-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400179
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400179
    reference: chr 12
allele count: 1
allele frequency: 9.055674285507299e-6
allele num: 110428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-20T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-20T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-20T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-20T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-20T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-78T>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-20T>G
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
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genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 97
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

12-78400189-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400189
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400189
    reference: chr 12
allele count: 1
allele frequency: 8.817720090293453e-6
allele num: 113408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-10C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-10C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-68C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-10C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-10C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-10C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-10C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28825
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7738
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

12-78400195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400195
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400195
    reference: chr 12
allele count: 38
allele frequency: 3.316865387636821e-4
allele num: 114566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.881-4C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.881-4C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-62C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.881-4C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.351-4C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.881-4C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.881-4C>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26656
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8334
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15210
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29303
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 7.25e1
  variant carriers: 0
hgvs: c.881-4C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

12-78400202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400202
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400202
    reference: chr 12
allele count: 2
allele frequency: 1.731691689611582e-5
allele num: 115494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-55C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.354C>T
  hgvsp: ENSP00000448037.1:p.Ser119Phe
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.884C>T
  hgvsp: ENSP00000228327.6:p.Ser295Phe
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.884C>T
  hgvsp: ENSP00000446628.1:p.Ser295Phe
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.884C>T
  hgvsp: ENSP00000381007.2:p.Ser295Phe
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.884C>T
  hgvsp: ENSP00000266692.7:p.Ser295Phe
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.884C>T
  hgvsp: ENSP00000446132.2:p.Ser295Phe
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7910
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser295Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

12-78400203-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400203
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400203
    reference: chr 12
allele count: 2
allele frequency: 1.730163673483511e-5
allele num: 115596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.885C>T
  hgvsp: ENST00000397909.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.885C>T
  hgvsp: ENST00000536525.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.885C>T
  hgvsp: ENST00000549464.1:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.885C>T
  hgvsp: ENST00000228327.6:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-54C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.355C>T
  hgvsp: ENST00000550503.1:c.355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.885C>T
  hgvsp: ENST00000266692.7:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5349
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser295Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

12-78400208-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400208
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400208
    reference: chr 12
allele count: 2
allele frequency: 1.723305990211622e-5
allele num: 116056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.890A>T
  hgvsp: ENSP00000228327.6:p.Lys297Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.890A>T
  hgvsp: ENSP00000381007.2:p.Lys297Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.890A>T
  hgvsp: ENSP00000446628.1:p.Lys297Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.360A>T
  hgvsp: ENSP00000448037.1:p.Lys121Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.890A>T
  hgvsp: ENSP00000266692.7:p.Lys297Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.890A>T
  hgvsp: ENSP00000446132.2:p.Lys297Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-49A>T
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30041
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5349
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys297Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-78400214-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400214
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400214
    reference: chr 12
allele count: 1
allele frequency: 8.58663918942126e-6
allele num: 116460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.896C>A
  hgvsp: ENSP00000266692.7:p.Pro299His
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.896C>A
  hgvsp: ENSP00000228327.6:p.Pro299His
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.896C>A
  hgvsp: ENSP00000446628.1:p.Pro299His
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.896C>A
  hgvsp: ENSP00000446132.2:p.Pro299His
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-43C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.896C>A
  hgvsp: ENSP00000381007.2:p.Pro299His
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.366C>A
  hgvsp: ENSP00000448037.1:p.Pro123His
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro299His
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

12-78400218-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400218
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400218
    reference: chr 12
allele count: 1
allele frequency: 8.566631257924135e-6
allele num: 116732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.900A>G
  hgvsp: ENST00000397909.2:c.900A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-39A>G
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.900A>G
  hgvsp: ENST00000266692.7:c.900A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.900A>G
  hgvsp: ENST00000228327.6:c.900A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.900A>G
  hgvsp: ENST00000536525.2:c.900A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.900A>G
  hgvsp: ENST00000549464.1:c.900A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.370A>G
  hgvsp: ENST00000550503.1:c.370A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5358
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln300Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD

12-78400220-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400220
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400220
    reference: chr 12
allele count: 1
allele frequency: 8.561643835616438e-6
allele num: 116800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.902C>T
  hgvsp: ENSP00000228327.6:p.Ser301Leu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.902C>T
  hgvsp: ENSP00000446628.1:p.Ser301Leu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-37C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.902C>T
  hgvsp: ENSP00000446132.2:p.Ser301Leu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.372C>T
  hgvsp: ENSP00000448037.1:p.Ser125Leu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.902C>T
  hgvsp: ENSP00000381007.2:p.Ser301Leu
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.902C>T
  hgvsp: ENSP00000266692.7:p.Ser301Leu
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5359
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser301Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

12-78400221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400221
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400221
    reference: chr 12
allele count: 8
allele frequency: 6.839477463921757e-5
allele num: 116968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-36G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.373G>A
  hgvsp: ENST00000550503.1:c.373G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.903G>A
  hgvsp: ENST00000549464.1:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.903G>A
  hgvsp: ENST00000228327.6:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.903G>A
  hgvsp: ENST00000397909.2:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.903G>A
  hgvsp: ENST00000536525.2:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.903G>A
  hgvsp: ENST00000266692.7:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15813
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser301Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

12-78400228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400228
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400228
    reference: chr 12
allele count: 2
allele frequency: 1.703635558281372e-5
allele num: 117396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.910G>A
  hgvsp: ENSP00000381007.2:p.Gly304Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.380G>A
  hgvsp: ENSP00000448037.1:p.Gly128Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-29G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.910G>A
  hgvsp: ENSP00000228327.6:p.Gly304Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.910G>A
  hgvsp: ENSP00000446628.1:p.Gly304Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.910G>A
  hgvsp: ENSP00000266692.7:p.Gly304Ser
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.910G>A
  hgvsp: ENSP00000446132.2:p.Gly304Ser
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5365
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly304Ser
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

12-78400229-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400229
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400229
    reference: chr 12
allele count: 1
allele frequency: 8.511942254983741e-6
allele num: 117482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.911G>A
  hgvsp: ENSP00000266692.7:p.Gly304Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-28G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.911G>A
  hgvsp: ENSP00000446132.2:p.Gly304Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.381G>A
  hgvsp: ENSP00000448037.1:p.Gly128Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.911G>A
  hgvsp: ENSP00000381007.2:p.Gly304Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.911G>A
  hgvsp: ENSP00000228327.6:p.Gly304Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.911G>A
  hgvsp: ENSP00000446628.1:p.Gly304Asp
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4442
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly304Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

12-78400231-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400231
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400231
    reference: chr 12
allele count: 3
allele frequency: 2.550933641712867e-5
allele num: 117604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-26G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.383G>A
  hgvsp: ENSP00000448037.1:p.Val129Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.913G>A
  hgvsp: ENSP00000446628.1:p.Val305Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.913G>A
  hgvsp: ENSP00000228327.6:p.Val305Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.913G>A
  hgvsp: ENSP00000381007.2:p.Val305Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.913G>A
  hgvsp: ENSP00000446132.2:p.Val305Ile
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.913G>A
  hgvsp: ENSP00000266692.7:p.Val305Ile
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val305Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-78400234-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400234
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400234
    reference: chr 12
allele count: 2
allele frequency: 1.698398410299088e-5
allele num: 117758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.386A>C
  hgvsp: ENSP00000448037.1:p.Asn130His
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.916A>C
  hgvsp: ENSP00000446132.2:p.Asn306His
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.916A>C
  hgvsp: ENSP00000228327.6:p.Asn306His
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.916A>C
  hgvsp: ENSP00000381007.2:p.Asn306His
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.916A>C
  hgvsp: ENSP00000446628.1:p.Asn306His
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-23A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.916A>C
  hgvsp: ENSP00000266692.7:p.Asn306His
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn306His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

12-78400236-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400236
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400236
    reference: chr 12
allele count: 41
allele frequency: 3.477287376598704e-4
allele num: 117908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.918T>C
  hgvsp: ENST00000228327.6:c.918T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.388T>C
  hgvsp: ENST00000550503.1:c.388T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.918T>C
  hgvsp: ENST00000397909.2:c.918T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.918T>C
  hgvsp: ENST00000549464.1:c.918T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.918T>C
  hgvsp: ENST00000266692.7:c.918T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.918T>C
  hgvsp: ENST00000536525.2:c.918T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-21T>C
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8610
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27245
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn306Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/12-78400241-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400241
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400241
    reference: chr 12
allele count: 1
allele frequency: 8.458233244239943e-6
allele num: 118228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.923A>C
  hgvsp: ENSP00000381007.2:p.Asn308Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.393A>C
  hgvsp: ENSP00000448037.1:p.Asn132Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-16A>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.923A>C
  hgvsp: ENSP00000228327.6:p.Asn308Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.923A>C
  hgvsp: ENSP00000266692.7:p.Asn308Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.923A>C
  hgvsp: ENSP00000446628.1:p.Asn308Thr
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.923A>C
  hgvsp: ENSP00000446132.2:p.Asn308Thr
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5395
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3390
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn308Thr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/12-78400242-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400242
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400242
    reference: chr 12
allele count: 1
allele frequency: 8.45594452900389e-6
allele num: 118260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.394C>A
  hgvsp: ENSP00000448037.1:p.Asn132Lys
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.924C>A
  hgvsp: ENSP00000266692.7:p.Asn308Lys
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-15C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.924C>A
  hgvsp: ENSP00000446132.2:p.Asn308Lys
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.924C>A
  hgvsp: ENSP00000446628.1:p.Asn308Lys
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.924C>A
  hgvsp: ENSP00000381007.2:p.Asn308Lys
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.924C>A
  hgvsp: ENSP00000228327.6:p.Asn308Lys
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8088
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn308Lys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

12-78400242-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400242
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400242
    reference: chr 12
allele count: 4
allele frequency: 3.382377811601556e-5
allele num: 118260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.394C>T
  hgvsp: ENST00000550503.1:c.394C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.924C>T
  hgvsp: ENST00000536525.2:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-15C>T
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.924C>T
  hgvsp: ENST00000228327.6:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.924C>T
  hgvsp: ENST00000266692.7:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.924C>T
  hgvsp: ENST00000397909.2:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.924C>T
  hgvsp: ENST00000549464.1:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5399
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30781
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8088
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn308Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

12-78400243-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400243
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400243
    reference: chr 12
allele count: 6
allele frequency: 5.065342923715936e-5
allele num: 118452
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.925G>A
  hgvsp: ENSP00000446132.2:p.Val309Met
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.925G>A
  hgvsp: ENSP00000381007.2:p.Val309Met
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.395G>A
  hgvsp: ENSP00000448037.1:p.Val133Met
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-14G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.925G>A
  hgvsp: ENSP00000446628.1:p.Val309Met
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.925G>A
  hgvsp: ENSP00000266692.7:p.Val309Met
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.925G>A
  hgvsp: ENSP00000228327.6:p.Val309Met
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5404
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4452
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3393
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8114
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val309Met
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

12-78400248-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400248
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400248
    reference: chr 12
allele count: 18
allele frequency: 1.51548318655598e-4
allele num: 118774
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.930G>A
  hgvsp: ENST00000536525.2:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.351-9G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.930G>A
  hgvsp: ENST00000397909.2:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.930G>A
  hgvsp: ENST00000549464.1:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.930G>A
  hgvsp: ENST00000228327.6:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.930G>A
  hgvsp: ENST00000266692.7:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.400G>A
  hgvsp: ENST00000550503.1:c.400G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln310Gln
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

12-78400260-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400260
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400260
    reference: chr 12
allele count: 1
allele frequency: 8.389261744966442e-6
allele num: 119200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.412T>C
  hgvsp: ENST00000550503.1:c.412T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.942T>C
  hgvsp: ENST00000266692.7:c.942T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.942T>C
  hgvsp: ENST00000228327.6:c.942T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.354T>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.942T>C
  hgvsp: ENST00000536525.2:c.942T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.942T>C
  hgvsp: ENST00000549464.1:c.942T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.942T>C
  hgvsp: ENST00000397909.2:c.942T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr314Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/12-78400262-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400262
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400262
    reference: chr 12
allele count: 2
allele frequency: 1.677373903416811e-5
allele num: 119234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.414C>A
  hgvsp: ENSP00000448037.1:p.Ala139Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.356C>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.944C>A
  hgvsp: ENSP00000266692.7:p.Ala315Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.944C>A
  hgvsp: ENSP00000228327.6:p.Ala315Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.944C>A
  hgvsp: ENSP00000446628.1:p.Ala315Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.944C>A
  hgvsp: ENSP00000446132.2:p.Ala315Asp
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.944C>A
  hgvsp: ENSP00000381007.2:p.Ala315Asp
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5410
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala315Asp
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-78400266-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400266
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400266
    reference: chr 12
allele count: 2
allele frequency: 1.675687450776681e-5
allele num: 119354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.948G>C
  hgvsp: ENST00000266692.7:c.948G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.418G>C
  hgvsp: ENST00000550503.1:c.418G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.948G>C
  hgvsp: ENST00000536525.2:c.948G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.948G>C
  hgvsp: ENST00000549464.1:c.948G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.360G>C
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.948G>C
  hgvsp: ENST00000397909.2:c.948G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.948G>C
  hgvsp: ENST00000228327.6:c.948G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5421
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly316Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

12-78400266-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78400266
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 78400266
    reference: chr 12
allele count: 10
allele frequency: 8.378437253883406e-5
allele num: 119354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000448037
  ensembl transcript: ENST00000550503
  gene symbol: NAV3
  hgvsc: ENST00000550503.1:c.418G>A
  hgvsp: ENST00000550503.1:c.418G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000381007
  ensembl transcript: ENST00000397909
  gene symbol: NAV3
  hgvsc: ENST00000397909.2:c.948G>A
  hgvsp: ENST00000397909.2:c.948G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067798
  ensembl transcript: ENST00000547725
  gene symbol: NAV3
  hgvsc: ENST00000547725.1:n.360G>A
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446628
  ensembl transcript: ENST00000549464
  gene symbol: NAV3
  hgvsc: ENST00000549464.1:c.948G>A
  hgvsp: ENST00000549464.1:c.948G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000228327
  ensembl transcript: ENST00000228327
  gene symbol: NAV3
  hgvsc: ENST00000228327.6:c.948G>A
  hgvsp: ENST00000228327.6:c.948G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000446132
  ensembl transcript: ENST00000536525
  gene symbol: NAV3
  hgvsc: ENST00000536525.2:c.948G>A
  hgvsp: ENST00000536525.2:c.948G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067798
  ensembl protein: ENSP00000266692
  ensembl transcript: ENST00000266692
  gene symbol: NAV3
  hgvsc: ENST00000266692.7:c.948G>A
  hgvsp: ENST00000266692.7:c.948G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15998
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Gly316Gly
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2316
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4203
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56011107990889e-5
allele num: 64098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.236e0

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

QD
type: SiteQuality
SIO_000300: 9.82e0

VQSLOD
type: SiteQuality
SIO_000300: 6.42e-1

DP
type: SiteQuality
SIO_000300: 1.827648e6

GenotypeQuality
all individuals: 255
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3384
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 7.614986293024673e-5
allele num: 13132
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64194
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

FS
type: SiteQuality
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QD
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MQ
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VQSLOD
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DP
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -1.405e0

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.55550024888004e-5
allele num: 64288
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549234678069034e-5
allele num: 64548
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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SIO_000300: 1.12e0

ClippingRankSum
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FS
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MQRankSum
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MQ
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QD
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.862776e6

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64630
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
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South Asian
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allele count: 1
allele frequency: 7.19010641357492e-5
allele num: 13908
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
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SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.48e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.991e0

QD
type: SiteQuality
SIO_000300: 1.566e1

DP
type: SiteQuality
SIO_000300: 1.866131e6

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64906
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South Asian
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allele frequency: 6.851192107426693e-5
allele num: 14596
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.042e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15574
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.529145513487063e-5
allele num: 65396
num of homozygotes: 0

East Asian
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allele num: 8482
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

BaseQRankSum
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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DP
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

African
type: Population
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65522
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European (Finnish)
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East Asian
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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QD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6604
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
type: Population
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Other
type: Population
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.523972080831479e-5
allele num: 65618
num of homozygotes: 0

DP
type: SiteQuality
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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Other
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European (Finnish)
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East Asian
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Latino
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
type: Population
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Latino
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allele frequency: 2.604618857440528e-4
allele num: 11518
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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QD
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FS
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MQRankSum
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SIO_000300: -9.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

DP
type: SiteQuality
SIO_000300: 1.919291e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514417252241338e-5
allele num: 66032
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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SIO_000300: 1.11e0

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 9.819000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e0

QD
type: SiteQuality
SIO_000300: 1.715e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.514554872323024e-5
allele num: 66026
num of homozygotes: 0

InbreedingCoeff
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QD
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.932055e6

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66184
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9666
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South Asian
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allele frequency: 6.086427267194157e-5
allele num: 16430
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
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SIO_000300: -1.45e0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.431e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.939221e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66220
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.080505898090721e-5
allele num: 16446
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InbreedingCoeff
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SIO_000300: 7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.396e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

QD
type: SiteQuality
SIO_000300: 1.082e1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

FS
type: SiteQuality
SIO_000300: 1.125e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.940201e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.26e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50793172085168e-5
allele num: 66316
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9692
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.281e1

BaseQRankSum
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SIO_000300: -1.287e0

DP
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SIO_000300: 1.94303e6

ClippingRankSum
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SIO_000300: 1.51e0

MQ
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MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507704369327262e-5
allele num: 66326
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8482
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Other
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 9694
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.304e0

MQRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 9.2e-3

ClippingRankSum
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VQSLOD
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 9734
num of homozygotes: 0

Other
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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VQSLOD
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BaseQRankSum
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MQ
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FS
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InbreedingCoeff
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DP
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QD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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Latino
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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European (Finnish)
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QD
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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MQ
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SIO_000300: 5.913e1

MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11546
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 66510
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DP
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BaseQRankSum
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ReadPosRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.444e1

VQSLOD
type: SiteQuality
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MQRankSum
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SIO_000300: -6.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

FS
type: SiteQuality
SIO_000300: 7.173e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.953765e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.587e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.012325266796934e-5
allele num: 66530
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.808e0

MQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

FS
type: SiteQuality
SIO_000300: 2.931e0

QD
type: SiteQuality
SIO_000300: 1.403e1

DP
type: SiteQuality
SIO_000300: 1.956427e6

VQSLOD
type: SiteQuality
SIO_000300: 8.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503940323647958e-5
allele num: 66492
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.121e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.242e0

FS
type: SiteQuality
SIO_000300: 7.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

MQ
type: SiteQuality
SIO_000300: 5.89e1

DP
type: SiteQuality
SIO_000300: 1.955876e6

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.557e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.28e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

DP
type: SiteQuality
SIO_000300: 1.955839e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093102607847916e-5
allele num: 16412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.955018e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.373e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 19722
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024800163968026e-4
allele num: 9758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.539e0

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.95e-1

DP
type: SiteQuality
SIO_000300: 1.954391e6

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.329754069968826e-4
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506931886678722e-5
allele num: 66360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.950581e6

QD
type: SiteQuality
SIO_000300: 1.343e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e-1

FS
type: SiteQuality
SIO_000300: 2.448e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.526252263126132e-5
allele num: 66280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.431e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

Other
type: Population
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allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.536244594308525e-5
allele num: 66134
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.733102253032929e-4
allele num: 11540
num of homozygotes: 0

African
type: Population
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allele frequency: 1.025851456709069e-4
allele num: 9748
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.920368710792472e-4
allele num: 15622
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.934688e6

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.929e1

ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 2.526e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2435
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GenotypeQuality
all individuals: 111
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515243348081702e-5
allele num: 65996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e0

DP
type: SiteQuality
SIO_000300: 1.925429e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.846e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.206e1

MQ
type: SiteQuality
SIO_000300: 5.932e1

VQSLOD
type: SiteQuality
SIO_000300: -5.651e-1

FS
type: SiteQuality
SIO_000300: 2.299e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4630
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5285
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13640
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520496289989052e-5
allele num: 65768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.90894e6

VQSLOD
type: SiteQuality
SIO_000300: -9.544e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

GenotypeQuality
all individuals: 682
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15800
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13640
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52114390021296e-5
allele num: 65740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.905534e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 3.666e0

QD
type: SiteQuality
SIO_000300: 1.1e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13639
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6474
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.144e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.152e0

QD
type: SiteQuality
SIO_000300: 1.154e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.904563e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.577e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15353
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13732
bin: 9.75e1
variant carriers: 106

GenotypeQuality
all individuals: 3673
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5276
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524297298945186e-5
allele num: 65604
num of homozygotes: 0

South Asian
type: Population
allele count: 107
allele frequency: 7.385422418553286e-3
allele num: 14488
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

FS
type: SiteQuality
SIO_000300: 1.954e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.62e-2

DP
type: SiteQuality
SIO_000300: 1.903191e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.073e0

QD
type: SiteQuality
SIO_000300: 1.176e1

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 4626
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3673
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3290
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14488
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.903191e6

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

QD
type: SiteQuality
SIO_000300: 1.176e1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.954e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.62e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.073e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14696
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13664
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2434
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.059226627508566e-5
allele num: 65376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 1.891436e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.341e0

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 4623
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 285
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variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
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GenotypeQuality
all individuals: 3662
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531018433461939e-5
allele num: 65316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

FS
type: SiteQuality
SIO_000300: 2.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

DP
type: SiteQuality
SIO_000300: 1.887394e6

QD
type: SiteQuality
SIO_000300: 7.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.827e1

VQSLOD
type: SiteQuality
SIO_000300: -1.132e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

GenotypeQuality
all individuals: 14318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13667
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variant carriers: 1

GenotypeQuality
all individuals: 4622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5278
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.179245283018868e-3
allele num: 848
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.886895e6

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 4.914e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

QD
type: SiteQuality
SIO_000300: 1.407e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 925
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3652
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 270
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GenotypeQuality
all individuals: 13741
bin: 9.75e1
variant carriers: 78

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65180
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.031778786628147e-4
allele num: 9692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 77
allele frequency: 5.792086655634121e-3
allele num: 13294
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 2.983e0

DP
type: SiteQuality
SIO_000300: 1.885919e6

QD
type: SiteQuality
SIO_000300: 1.501e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 1600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 12160
bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3405
bin: 4.75e1
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GenotypeQuality
all individuals: 6201
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variant carriers: 0

GenotypeQuality
all individuals: 5192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3895
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.674817444898506e-5
allele num: 59708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.668e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.374651e6

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.348625389277701e-5
allele num: 59726
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -6.835e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.37e-1

DP
type: SiteQuality
SIO_000300: 1.394866e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

QD
type: SiteQuality
SIO_000300: 1.642e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 26

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 4
allele frequency: 3.597769382982551e-4
allele num: 11118
num of homozygotes: 0

African
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allele count: 20
allele frequency: 2.445585717779408e-3
allele num: 8178
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11656
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.671569938486226e-5
allele num: 59824
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.167e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.403323e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e-1

FS
type: SiteQuality
SIO_000300: 2.799e0

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.204e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59914
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8200
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.420975e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 7.34e0

VQSLOD
type: SiteQuality
SIO_000300: -1.629e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.319190709127816e-5
allele num: 60102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

FS
type: SiteQuality
SIO_000300: 8.81e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.455694e6

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.322700691121744e-5
allele num: 60192
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

FS
type: SiteQuality
SIO_000300: 1.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

DP
type: SiteQuality
SIO_000300: 1.466493e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

QD
type: SiteQuality
SIO_000300: 1.528e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.495215311004785e-4
allele num: 60192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.793400286944046e-4
allele num: 11152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.665001665001665e-4
allele num: 12012
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

FS
type: SiteQuality
SIO_000300: 1.252e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 1.466493e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.644899167681021e-5
allele num: 60794
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.9e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.058e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.276003276003276e-5
allele num: 61050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 822
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.508822e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.835483300936562e-5
allele num: 11318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

QD
type: SiteQuality
SIO_000300: 1.579e1

FS
type: SiteQuality
SIO_000300: 3.241e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.530395e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4322
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.598261091931978e-5
allele num: 62568
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

FS
type: SiteQuality
SIO_000300: 1.476e0

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

BaseQRankSum
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SIO_000300: -2.889e0

QD
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SIO_000300: 1.151e1

MQRankSum
type: SiteQuality
SIO_000300: -7.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.564707e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.744316194473592e-5
allele num: 11436
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

East Asian
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allele count: 34
allele frequency: 4.022716516800758e-3
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.172387538861747e-5
allele num: 63044
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.425909266161162e-5
allele num: 15562
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

FS
type: SiteQuality
SIO_000300: 2.448e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

BaseQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 1.145e1

DP
type: SiteQuality
SIO_000300: 1.57957e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743983257760725e-4
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63462
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.618e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 1.589515e6

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.14911037631869e-5
allele num: 63510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.252e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.113e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

FS
type: SiteQuality
SIO_000300: 4.136e0

DP
type: SiteQuality
SIO_000300: 1.59073e6

QD
type: SiteQuality
SIO_000300: 1.627e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63716
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.741250217656277e-4
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
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VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

DP
type: SiteQuality
SIO_000300: 1.596691e6

FS
type: SiteQuality
SIO_000300: 2.343e0

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.32e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563672754565924e-5
allele num: 63952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8774
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.96e-1

MQ
type: SiteQuality
SIO_000300: 5.835e1

VQSLOD
type: SiteQuality
SIO_000300: -2.129e0

DP
type: SiteQuality
SIO_000300: 1.602432e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.731e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559624442434262e-5
allele num: 64118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8822
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.6059e6

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.120000000000001e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558797855094152e-5
allele num: 64152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.607378e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.112743572184524e-5
allele num: 64252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

East Asian
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allele count: 5
allele frequency: 5.863039399624766e-4
allele num: 8528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.78e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.943e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.61e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4441
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GenotypeQuality
all individuals: 37
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64472
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.230151650312221e-4
allele num: 8968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.627e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 1.088e1

FS
type: SiteQuality
SIO_000300: 2.651e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.613323e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.529e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.24e0

GenotypeQuality
all individuals: 1392
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8079
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30565
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3376
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.111111111111111e-4
allele num: 9000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.118e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 7.573e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.074e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

DP
type: SiteQuality
SIO_000300: 1.614143e6

VQSLOD
type: SiteQuality
SIO_000300: 8.080000000000001e-1

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4452
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30584
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5366
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3384
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.64482566421007e-5
allele num: 64588
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

QD
type: SiteQuality
SIO_000300: 1.277e1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.867e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

DP
type: SiteQuality
SIO_000300: 1.615401e6

FS
type: SiteQuality
SIO_000300: 4.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4457
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8098
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5368
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73460537727667e-4
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 2.162e0

QD
type: SiteQuality
SIO_000300: 1.336e1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.617021e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.34e0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
all individuals: 1398
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3387
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8096
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5408
bin: 9.75e1
variant carriers: 41

GenotypeQuality
all individuals: 4450
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.469812630117973e-4
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.042102701387199e-4
allele num: 16436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.786757666532843e-4
allele num: 64762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.620002e6

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30836
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8098
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4457
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539171925504079e-5
allele num: 64970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

QD
type: SiteQuality
SIO_000300: 1.357e1

FS
type: SiteQuality
SIO_000300: 3.828e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.622031e6

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4450
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5399
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30781
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538461538461538e-5
allele num: 65000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

FS
type: SiteQuality
SIO_000300: 5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

DP
type: SiteQuality
SIO_000300: 1.623158e6

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3251
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4450
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.33590282644242e-4
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538461538461538e-5
allele num: 65000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

DP
type: SiteQuality
SIO_000300: 1.623158e6

FS
type: SiteQuality
SIO_000300: 5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.213e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 1769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30936
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.197505197505198e-4
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65148
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

FS
type: SiteQuality
SIO_000300: 1.128e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 1.625453e6

VQSLOD
type: SiteQuality
SIO_000300: -7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.005e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4455
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5414
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 96
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.032681326691775e-3
allele num: 16462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530175052025952e-5
allele num: 65352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.628598e6

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

QD
type: SiteQuality
SIO_000300: 1.231e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 1.153e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.542e0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31142
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4457
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5410
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523322060750084e-5
allele num: 65646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

DP
type: SiteQuality
SIO_000300: 1.632032e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.927e1

FS
type: SiteQuality
SIO_000300: 7.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8163
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4461
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31058
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.045530683721638e-5
allele num: 65670
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.102e0

FS
type: SiteQuality
SIO_000300: 2.765e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.382e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.632472e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31040
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4460
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.531e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 1.727e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.635018e6

QD
type: SiteQuality
SIO_000300: 1.222e1